PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1s1iD_

Fold library id	PDB Header	Molecule	Title
c1s1iD_	PDB header: ribosome	Chain: D: PDB Molecule: 60s ribosomal protein l4-b;	PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.

Links to external resources
Added to library: Tue Mar 16 12:57:19 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q V T V H S L T G E A T A N A L P L P A V F S A P I R P D I V H T V F T S V N K N K R Q A Y A V S E K A G H Q T S A E S W G T G R A V A R I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T
S B
S T T S
T T
T T S S
S S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P R V G G G G T G R S G Q G A F G N M C R G G R M F A P T K T W R K W N V K V N H N E K R Y A T A S A I A A T A V A S L V L A R G H R V E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
S S
S T T S
S
S
S
S T T T T T S S T T T T T S S S
S T T T S S S S
B S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I P E I P L V V S T D L E S I Q K T K E A V A A L K A V G A H S D L L K V L K S K K L R A G K G K Y R N R R W T Q R R G P L V V Y A E D N G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
B
S T T S S
S T T T T S B T S S
S
S T T S S S S
S S
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . .

Sequence I V K A L R N V P G V E T A N V A S L N L L Q L A P G A H L G R F V I W T E A A F T K L D Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
T T T
T T T S S S S S
S
S S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	V	T	V	H	S	L	T	G	E	A	T	A	N	A	L	P	L	P	A	V	F	S	A	P	I	R	P	D	I	V	H	T	V	F	T	S	V	N	K	N	K	R	Q	A	Y	A	V	S	E	K	A	G	H	Q	T	S	A	E	S	W	G	T	G	R	A	V	A	R	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					B		T	T		S	B									S	T	T	S																		T	T								T	T	S	S										S	S	S	S				S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	R	V	G	G	G	G	T	G	R	S	G	Q	G	A	F	G	N	M	C	R	G	G	R	M	F	A	P	T	K	T	W	R	K	W	N	V	K	V	N	H	N	E	K	R	Y	A	T	A	S	A	I	A	A	T	A	V	A	S	L	V	L	A	R	G	H	R	V	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S	S				S	S				S	T	T	S					S							S		S								S	T	T	T	T	T	S	S	T	T	T	T	T	S	S	S		S	T	T	T	S	S	S	S			B	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	P	E	I	P	L	V	V	S	T	D	L	E	S	I	Q	K	T	K	E	A	V	A	A	L	K	A	V	G	A	H	S	D	L	L	K	V	L	K	S	K	K	L	R	A	G	K	G	K	Y	R	N	R	R	W	T	Q	R	R	G	P	L	V	V	Y	A	E	D	N	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S			S		B			S	T	T	S	S			S	T	T								T	T	S	B	T					S	S			S						S	T	T	S	S	S	S			S	S												S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Sequence	I	V	K	A	L	R	N	V	P	G	V	E	T	A	N	V	A	S	L	N	L	L	Q	L	A	P	G	A	H	L	G	R	F	V	I	W	T	E	A	A	F	T	K	L	D	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	S	S						T	T	T			T	T	T	S	S	S	S	S		S								S	S	S				S