Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		Q	F	I	M	E	K	Y	G	I	P	Q	I	S	T	G	D	M	L	R	A	A	V	K	S	G	S	E	L	G	K	Q	A	K	D	I	M	D	A	G	K	L	V	T	D	E	L	V	I	A	L	V	K	E	R	I	A	Q	E	D	C
Secondary structure
SS confidence
Disorder		?	?	?																						?	?																															?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	N	G	F	L	L	D	G	F	P	R	T	I	P	Q	A	D	A	M	K	E	A	G	I	N	V	D	Y	V	L	E	F	D	V	P	D	E	L	I	V	D	R	I	V	G	R	R	V	H	A	P	S	G	R	V	Y	H	V	K	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Sequence		N	P	P	K	V	E	G	K	D	D	V	T	G	E	E	L	T	T	R	K	D	D	Q	E	E	T	V	R	K	R	L	V	E	Y	H	Q	M	T	A	P	L	I	G	Y	Y	S	K
Secondary structure
SS confidence
Disorder				?						?	?	?																																			?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3gmt chain B Region: 1 - 167 Aligned: 167 Modelled: 167 Confidence: 100.0% Identity: 66% PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from burkholderia pseudomallei Phyre2 PDB 2xb4 chain A Region: 1 - 167 Aligned: 166 Modelled: 167 Confidence: 100.0% Identity: 33% PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structures of zinc containing adenylate kinase from2 desulfovibrio gigas Phyre2 PDB 2ar7 chain A Region: 1 - 167 Aligned: 165 Modelled: 167 Confidence: 100.0% Identity: 39% PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 4; PDBTitle: crystal structure of human adenylate kinase 4, ak4 Phyre2 PDB 3tlx chain A Region: 1 - 167 Aligned: 167 Modelled: 167 Confidence: 99.9% Identity: 45% PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 2; PDBTitle: crystal structure of pf10_0086, adenylate kinase from plasmodium2 falciparum Phyre2 PDB 1ank chain A Region: 1 - 167 Aligned: 167 Modelled: 167 Confidence: 99.9% Identity: 100% PDB header:transferase(phosphotransferase) Chain: A: PDB Molecule:adenylate kinase; PDBTitle: the closed conformation of a highly flexible protein: the2 structure of e. coli adenylate kinase with bound amp and3 amppnp Phyre2 PDB 1s3g chain A Region: 1 - 167 Aligned: 167 Modelled: 167 Confidence: 99.9% Identity: 51% PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from bacillus2 globisporus Phyre2 PDB 2eu8 chain B Region: 1 - 167 Aligned: 167 Modelled: 167 Confidence: 99.9% Identity: 50% PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of a thermostable mutant of bacillus2 subtilis adenylate kinase (q199r) Phyre2 PDB 3aky chain A Region: 1 - 167 Aligned: 167 Modelled: 167 Confidence: 99.9% Identity: 46% PDB header:adenylate kinase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: stability, activity and structure of adenylate kinase2 mutants Phyre2 PDB 2ak3 chain B Region: 1 - 167 Aligned: 165 Modelled: 167 Confidence: 99.9% Identity: 44% PDB header:transferase (phosphotransferase) Chain: B: PDB Molecule:adenylate kinase isoenzyme-3; PDBTitle: the three-dimensional structure of the complex between2 mitochondrial matrix adenylate kinase and its substrate3 amp at 1.85 angstroms resolution Phyre2 PDB 3be4 chain A Region: 1 - 167 Aligned: 165 Modelled: 167 Confidence: 99.8% Identity: 51% PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of cryptosporidium parvum adenylate kinase cgd5_3360 Phyre2 PDB 2ak2 chain A Region: 1 - 167 Aligned: 167 Modelled: 167 Confidence: 99.8% Identity: 50% PDB header:phosphotransferase Chain: A: PDB Molecule:adenylate kinase isoenzyme-2; PDBTitle: adenylate kinase isoenzyme-2 Phyre2 PDB 2rh5 chain B Region: 1 - 167 Aligned: 157 Modelled: 167 Confidence: 99.6% Identity: 49% PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: structure of apo adenylate kinase from aquifex aeolicus Phyre2 PDB 1zak chain B Region: 1 - 167 Aligned: 163 Modelled: 167 Confidence: 99.5% Identity: 47% PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: adenylate kinase from maize in complex with the inhibitor2 p1,p5-bis(adenosine-5'-)pentaphosphate (ap5a) Phyre2 PDB 1p3j chain A domain 1 Region: 1 - 167 Aligned: 132 Modelled: 132 Confidence: 99.5% Identity: 52% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 PDB 2bwj chain C Region: 1 - 167 Aligned: 140 Modelled: 140 Confidence: 99.5% Identity: 32% PDB header:transferase Chain: C: PDB Molecule:adenylate kinase 5; PDBTitle: structure of adenylate kinase 5 Phyre2 PDB 2ak3 chain A domain 1 Region: 1 - 167 Aligned: 128 Modelled: 130 Confidence: 99.4% Identity: 42% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 PDB 1ak2 chain A domain 1 Region: 1 - 167 Aligned: 137 Modelled: 137 Confidence: 99.4% Identity: 48% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 PDB 1ukz chain A Region: 1 - 167 Aligned: 140 Modelled: 140 Confidence: 99.4% Identity: 31% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 PDB 1s3g chain A domain 1 Region: 1 - 167 Aligned: 132 Modelled: 132 Confidence: 99.4% Identity: 52% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 PDB 3adk chain A Region: 1 - 167 Aligned: 140 Modelled: 140 Confidence: 99.4% Identity: 39% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 1 c3gmtB_ 2 c2xb4A_ 3 c2ar7A_ 4 c3tlxA_ 5 c1ankA_ 6 c1s3gA_ 7 c2eu8B_ 8 c3akyA_ 9 c2ak3B_ 10 c3be4A_ 11 c2ak2A_ 12 c2rh5B_ 13 c1zakB_ 14 d1p3ja1 15 c2bwjC_ 16 d2ak3a1 17 d1ak2a1 18 d1ukza_ 19 d1s3ga1 20 d3adka_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3gmtB_ 100.0 66 PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from burkholderia pseudomallei 2 c2xb4A_ 100.0 33 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structures of zinc containing adenylate kinase from2 desulfovibrio gigas 3 c2ar7A_ 100.0 39 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 4; PDBTitle: crystal structure of human adenylate kinase 4, ak4 4 c3tlxA_ 99.9 45 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 2; PDBTitle: crystal structure of pf10_0086, adenylate kinase from plasmodium2 falciparum 5 c1ankA_ 99.9 100 PDB header:transferase(phosphotransferase) Chain: A: PDB Molecule:adenylate kinase; PDBTitle: the closed conformation of a highly flexible protein: the2 structure of e. coli adenylate kinase with bound amp and3 amppnp 6 c1s3gA_ 99.9 51 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from bacillus2 globisporus 7 c2eu8B_ 99.9 50 PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of a thermostable mutant of bacillus2 subtilis adenylate kinase (q199r) 8 c3akyA_ 99.9 46 PDB header:adenylate kinase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: stability, activity and structure of adenylate kinase2 mutants 9 c2ak3B_ 99.9 44 PDB header:transferase (phosphotransferase) Chain: B: PDB Molecule:adenylate kinase isoenzyme-3; PDBTitle: the three-dimensional structure of the complex between2 mitochondrial matrix adenylate kinase and its substrate3 amp at 1.85 angstroms resolution 10 c3be4A_ 99.8 51 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of cryptosporidium parvum adenylate kinase cgd5_3360 11 c2ak2A_ 99.8 50 PDB header:phosphotransferase Chain: A: PDB Molecule:adenylate kinase isoenzyme-2; PDBTitle: adenylate kinase isoenzyme-2 12 c2rh5B_ 99.6 49 PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: structure of apo adenylate kinase from aquifex aeolicus 13 c1zakB_ 99.5 47 PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: adenylate kinase from maize in complex with the inhibitor2 p1,p5-bis(adenosine-5'-)pentaphosphate (ap5a) 14 d1p3ja1 99.5 52 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 15 c2bwjC_ 99.5 32 PDB header:transferase Chain: C: PDB Molecule:adenylate kinase 5; PDBTitle: structure of adenylate kinase 5 16 d2ak3a1 99.4 42 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 17 d1ak2a1 99.4 48 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 18 d1ukza_ 99.4 31 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 19 d1s3ga1 99.4 52 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 20 d3adka_ 99.4 39 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 21 d1e4va1 not modelled 99.3 100 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 22 d2cdna1 not modelled 99.3 46 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 23 d1qf9a_ not modelled 99.3 32 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 24 d1zaka1 not modelled 99.3 49 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 25 d1zina1 not modelled 99.3 52 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 26 c3cm0A_ not modelled 99.2 45 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from thermus2 thermophilus hb8 27 d1akya1 not modelled 99.2 41 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 28 d1teva_ not modelled 99.2 36 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 29 d1bifa1 not modelled 99.0 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain 30 d1akya2 not modelled 98.7 63 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 31 c3t61A_ not modelled 98.6 16 PDB header:transferase Chain: A: PDB Molecule:gluconokinase; PDBTitle: crystal structure of a gluconokinase from sinorhizobium meliloti 1021 32 d2ak3a2 not modelled 98.3 58 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 33 d1e4va2 not modelled 98.2 100 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 34 d1s3ga2 not modelled 98.2 54 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 35 d1zina2 not modelled 98.2 43 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 36 d1p3ja2 not modelled 98.2 49 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 37 d1e6ca_ not modelled 98.1 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 38 d1rkba_ not modelled 98.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 39 d1k6ma1 not modelled 98.0 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain 40 d1knqa_ not modelled 97.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Gluconate kinase 41 d1gsia_ not modelled 97.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 42 d1kaga_ not modelled 97.8 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 43 c2plrB_ not modelled 97.8 10 PDB header:transferase Chain: B: PDB Molecule:probable thymidylate kinase; PDBTitle: crystal structure of dtmp kinase (st1543) from sulfolobus tokodaii2 strain7 44 c1bifA_ not modelled 97.7 12 PDB header:bifunctional enzyme Chain: A: PDB Molecule:6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase; PDBTitle: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase bifunctional2 enzyme complexed with atp-g-s and phosphate 45 c2rhmD_ not modelled 97.7 10 PDB header:unknown function Chain: D: PDB Molecule:putative kinase; PDBTitle: crystal structure of a putative kinase (caur_3907) from chloroflexus2 aurantiacus j-10-fl at 1.70 a resolution 46 d4tmka_ not modelled 97.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 47 c3trfB_ not modelled 97.5 10 PDB header:transferase Chain: B: PDB Molecule:shikimate kinase; PDBTitle: structure of a shikimate kinase (arok) from coxiella burnetii 48 c3nwjB_ not modelled 97.5 16 PDB header:transferase Chain: B: PDB Molecule:atsk2; PDBTitle: crystal structure of shikimate kinase from arabidopsis thaliana2 (atsk2) 49 c1yj5B_ not modelled 97.5 17 PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 50 c2h92C_ not modelled 97.5 18 PDB header:transferase Chain: C: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of staphylococcus aureus cytidine2 monophosphate kinase in complex with cytidine-5'-3 monophosphate 51 c3h0kA_ not modelled 97.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0200 protein sso1041; PDBTitle: crystal structure of an adenylated kinase related protein from2 sulfolobus solfataricus to 3.25a 52 c3zvmA_ not modelled 97.4 18 PDB header:hydrolase/transferase/dna Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase; PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase 53 c2ia5C_ not modelled 97.3 17 PDB header:transferase Chain: C: PDB Molecule:polynucleotide kinase; PDBTitle: t4 polynucleotide kinase/phosphatase with bound sulfate and2 magnesium. 54 d1q3ta_ not modelled 97.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 55 d1yj5a2 not modelled 97.2 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 56 c2w0sB_ not modelled 97.2 20 PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate 57 c1zuiA_ not modelled 97.1 14 PDB header:transferase Chain: A: PDB Molecule:shikimate kinase; PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase 58 c2z0hA_ not modelled 97.1 17 PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase in complex with dtdp2 and adp from thermotoga maritima 59 d1zaka2 not modelled 97.1 42 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 60 c1ly1A_ not modelled 97.1 15 PDB header:transferase Chain: A: PDB Molecule:polynucleotide kinase; PDBTitle: structure and mechanism of t4 polynucleotide kinase 61 d1ly1a_ not modelled 97.1 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 62 d1khta_ not modelled 97.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 63 d1y63a_ not modelled 97.0 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 64 c2pt5D_ not modelled 96.9 11 PDB header:transferase Chain: D: PDB Molecule:shikimate kinase; PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5 65 d1ki9a_ not modelled 96.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 66 d1vhta_ not modelled 96.9 25 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 67 d1ckea_ not modelled 96.9 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 68 c2pbrB_ not modelled 96.9 17 PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase (aq_969) from aquifex aeolicus2 vf5 69 d2iyva1 not modelled 96.8 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 70 c2ccjA_ not modelled 96.8 15 PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of s. aureus thymidylate kinase complexed2 with thymidine monophosphate 71 d1viaa_ not modelled 96.8 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 72 c2if2C_ not modelled 96.4 13 PDB header:transferase Chain: C: PDB Molecule:dephospho-coa kinase; PDBTitle: crystal structure of the putative dephospho-coa kinase from aquifex2 aeolicus, northeast structural genomics target qr72. 73 c1k6mA_ not modelled 96.3 20 PDB header:transferase, hydrolase Chain: A: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of human liver 6-phosphofructo-2-2 kinase/fructose-2,6-bisphosphatase 74 c2ql6H_ not modelled 96.2 10 PDB header:signaling protein,transferase Chain: H: PDB Molecule:nicotinamide riboside kinase 1; PDBTitle: human nicotinamide riboside kinase (nrk1) 75 d1nn5a_ not modelled 96.1 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 76 d1nksa_ not modelled 96.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 77 d2bdta1 not modelled 96.1 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Atu3015-like 78 c3lv8A_ not modelled 95.7 18 PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp 79 c3tr0A_ not modelled 95.5 16 PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: structure of guanylate kinase (gmk) from coxiella burnetii 80 c2vliB_ not modelled 94.8 11 PDB header:transferase Chain: B: PDB Molecule:antibiotic resistance protein; PDBTitle: structure of deinococcus radiodurans tunicamycin resistance2 protein 81 d1jjva_ not modelled 94.7 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 82 c2f6rA_ not modelled 94.5 20 PDB header:transferase Chain: A: PDB Molecule:bifunctional coenzyme a synthase; PDBTitle: crystal structure of bifunctional coenzyme a synthase (coa synthase):2 (18044849) from mus musculus at 1.70 a resolution 83 c2wwiC_ not modelled 94.0 17 PDB header:transferase Chain: C: PDB Molecule:thymidilate kinase, putative; PDBTitle: plasmodium falciparum thymidylate kinase in complex with2 aztmp and adp 84 c3akcA_ not modelled 93.6 18 PDB header:transferase Chain: A: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8 85 c2qroB_ not modelled 93.1 13 PDB header:transferase Chain: B: PDB Molecule:deoxycytidine kinase; PDBTitle: human deoxycytidine kinase damp, udp, mg ion product complex 86 d1tmka_ not modelled 90.8 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 87 c3r8cB_ not modelled 90.1 14 PDB header:transferase Chain: B: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cytidylate kinase (cmk) from mycobacterium2 abscessus 88 c2grjH_ not modelled 89.1 14 PDB header:transferase Chain: H: PDB Molecule:dephospho-coa kinase; PDBTitle: crystal structure of dephospho-coa kinase (ec 2.7.1.24)2 (dephosphocoenzyme a kinase) (tm1387) from thermotoga maritima at3 2.60 a resolution 89 c3hdtB_ not modelled 89.1 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase from clostridium symbiosum atcc2 14940 90 d1p5zb_ not modelled 87.2 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 91 c2p5tD_ not modelled 87.2 15 PDB header:transcription regulator Chain: D: PDB Molecule:pezt; PDBTitle: molecular and structural characterization of the pezat chromosomal2 toxin-antitoxin system of the human pathogen streptococcus pneumoniae 92 c1m8pB_ not modelled 84.8 19 PDB header:transferase Chain: B: PDB Molecule:sulfate adenylyltransferase; PDBTitle: crystal structure of p. chrysogenum atp sulfurylase in the t-state 93 d1m8pa3 not modelled 84.0 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 94 d1zp6a1 not modelled 82.8 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Atu3015-like 95 c2vp4D_ not modelled 82.1 9 PDB header:transferase Chain: D: PDB Molecule:deoxynucleoside kinase; PDBTitle: structural studies of nucleoside analog and feedback2 inhibitor binding to drosophila melanogaster3 multisubstrate deoxyribonucleoside kinase 96 c3ch4B_ not modelled 81.5 9 PDB header:transferase Chain: B: PDB Molecule:phosphomevalonate kinase; PDBTitle: the crystal structure of human phosphomavelonate kinase at2 1.8 a resolution 97 c3asyB_ not modelled 78.6 21 PDB header:transferase Chain: B: PDB Molecule:uridine kinase; PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8 98 d1uj2a_ not modelled 77.7 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 99 c2jatA_ not modelled 77.6 18 PDB header:transferase Chain: A: PDB Molecule:deoxyguanosine kinase; PDBTitle: structure of deoxyadenosine kinase from m.mycoides with2 products dcmp and a flexible dcdp bound 100 c3fdiA_ not modelled 69.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560. 101 c1ueiB_ not modelled 69.8 20 PDB header:transferase Chain: B: PDB Molecule:uridine-cytidine kinase 2; PDBTitle: crystal structure of human uridine-cytidine kinase 22 complexed with a feedback-inhibitor, utp 102 d2vp4a1 not modelled 66.2 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 103 d2ocpa1 not modelled 66.2 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 104 c2i1vB_ not modelled 63.5 15 PDB header:transferase, hydrolase Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate 105 d1uf9a_ not modelled 63.3 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 106 c2gksB_ not modelled 63.2 18 PDB header:transferase Chain: B: PDB Molecule:bifunctional sat/aps kinase; PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile 107 c1qhiA_ not modelled 63.1 18 PDB header:transferase Chain: A: PDB Molecule:protein (thymidine kinase); PDBTitle: herpes simplex virus type-i thymidine kinase complexed with2 a novel non-substrate inhibitor, 9-(4-hydroxybutyl)-n2-3 phenylguanine 108 d1e2ka_ not modelled 61.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 109 d1p6xa_ not modelled 60.3 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 110 d1gkya_ not modelled 52.0 25 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 111 d1m7gb_ not modelled 49.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase) 112 d1lvga_ not modelled 49.1 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 113 c2yvuA_ not modelled 46.8 5 PDB header:transferase Chain: A: PDB Molecule:probable adenylyl-sulfate kinase; PDBTitle: crystal structure of ape1195 114 d2axpa1 not modelled 41.6 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 115 c3ecsD_ not modelled 39.7 14 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 116 d1qhxa_ not modelled 37.4 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Chloramphenicol phosphotransferase 117 c3ld9D_ not modelled 29.8 12 PDB header:transferase Chain: D: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase from ehrlichia chaffeensis at2 2.15a resolution 118 d1znwa1 not modelled 28.8 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 119 c3cr8C_ not modelled 25.8 16 PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans 120 d1s96a_ not modelled 25.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0