Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	Q	K	I	E	Q	S	Q	R	Q	E	R	V	A	A	W	N	R	R	A	E	C	D	L	A	A	F	Q	N	S	P	K	Q	T	Y	Q	A	E	K	A	R	D	R	K	L	C	A	N	L	E	E	A	I	R	R	S	G	L	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?											?					?		?					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	G	M	T	V	S	F	H	H	A	F	R	G	G	D	L	T	V	N	M	V	M	D	V	I	A	K	M	G	F	K	N	L	T	L	A	S	S	S	L	S	D	C	H	A	P	L	V	E	H	I	R	Q	G	V	V	T	R	I	Y
Secondary structure
SS confidence
Disorder																																						?	?	?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	S	G	L	R	G	P	L	A	E	E	I	S	R	G	L	L	A	E	P	V	Q	I	H	S	H	G	G	R	V	H	L	V	Q	S	G	E	L	N	I	D	V	A	F	L	G	V	P	S	C	D	E	F	G	N	A	N	G	Y	T
Secondary structure
SS confidence
Disorder																																	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	K	A	C	C	G	S	L	G	Y	A	I	V	D	A	D	N	A	K	Q	V	V	M	L	T	E	E	L	L	P	Y	P	H	N	P	A	S	I	E	Q	D	Q	V	D	L	I	V	K	V	D	R	V	G	D	A	A	K	I	G	A
Secondary structure
SS confidence
Disorder			?	?	?	?	?																																																	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	A	T	R	M	T	T	N	P	R	E	L	L	I	A	R	S	A	A	D	V	I	V	N	S	G	Y	F	K	E	G	F	S	M	Q	T	G	T	G	G	A	S	L	A	V	T	R	F	L	E	D	K	M	R	S	R	D	I	R	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																?	?	?																									?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	F	A	L	G	G	I	T	A	T	M	V	D	L	H	E	K	G	L	I	R	K	L	L	D	V	Q	S	F	D	S	H	A	A	Q	S	L	A	R	N	P	N	H	I	E	I	S	A	N	Q	Y	A	N	W	G	S	K	G	A	S
Secondary structure
SS confidence
Disorder					?	?																																																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		V	D	R	L	D	V	V	V	L	S	A	L	E	I	D	T	Q	F	N	V	N	V	L	T	G	S	D	G	V	L	R	G	A	S	G	G	H	C	D	T	A	I	A	S	A	L	S	I	I	V	A	P	L	V	R	G	R	I	P	T
Secondary structure
SS confidence
Disorder		?																									?		?																								?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		L	V	D	N	V	L	T	C	I	T	P	G	S	S	V	D	I	L	V	T	D	H	G	I	A	V	N	P	A	R	P	E	L	A	E	R	L	Q	E	A	G	I	K	V	V	S	I	E	W	L	R	E	R	A	R	L	L	T	G	E
Secondary structure
SS confidence
Disorder									?																																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Sequence		P	Q	P	I	E	F	T	D	R	V	V	A	V	V	R	Y	R	D	G	S	V	I	D	V	V	H	Q	V	K	E
Secondary structure
SS confidence
Disorder																												?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1xr4 chain B Region: 41 - 509 Aligned: 469 Modelled: 469 Confidence: 100.0% Identity: 72% PDB header:hydrolase/transferase Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase; PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium] Phyre2 PDB 2hj0 chain A Region: 37 - 510 Aligned: 474 Modelled: 474 Confidence: 100.0% Identity: 55% PDB header:lyase Chain: A: PDB Molecule:putative citrate lyase, alfa subunit; PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target). Phyre2 PDB 3gk7 chain A Region: 39 - 483 Aligned: 407 Modelled: 437 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum Phyre2 PDB 2oas chain A Region: 46 - 479 Aligned: 400 Modelled: 433 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. Phyre2 PDB 2g39 chain A Region: 37 - 489 Aligned: 424 Modelled: 444 Confidence: 100.0% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:acetyl-coa hydrolase; PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa Phyre2 PDB 2nvv chain F Region: 45 - 506 Aligned: 438 Modelled: 447 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. Phyre2 PDB 3eh7 chain A Region: 39 - 479 Aligned: 376 Modelled: 382 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 Phyre2 PDB 1xr4 chain A domain 2 Region: 241 - 509 Aligned: 269 Modelled: 269 Confidence: 100.0% Identity: 72% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 3d3u chain A Region: 39 - 476 Aligned: 361 Modelled: 405 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 Phyre2 PDB 1xr4 chain A domain 1 Region: 17 - 240 Aligned: 207 Modelled: 207 Confidence: 100.0% Identity: 70% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 2ahv chain C Region: 43 - 501 Aligned: 406 Modelled: 435 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: C: PDB Molecule:putative enzyme ydif; PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1 Phyre2 PDB 1ooy chain A Region: 44 - 494 Aligned: 399 Modelled: 438 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase, PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart Phyre2 PDB 2g39 chain A domain 2 Region: 242 - 487 Aligned: 235 Modelled: 246 Confidence: 100.0% Identity: 19% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 3rrl chain C Region: 44 - 243 Aligned: 190 Modelled: 200 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a; PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695 Phyre2 PDB 3cdk chain A Region: 44 - 240 Aligned: 188 Modelled: 195 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis Phyre2 PDB 1ooy chain A domain 1 Region: 250 - 492 Aligned: 211 Modelled: 240 Confidence: 100.0% Identity: 15% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase beta subunit-like Phyre2 PDB 1ooy chain A domain 2 Region: 44 - 231 Aligned: 179 Modelled: 188 Confidence: 100.0% Identity: 27% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 2ahu chain A domain 2 Region: 43 - 243 Aligned: 197 Modelled: 201 Confidence: 100.0% Identity: 17% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 3cdk chain D Region: 249 - 484 Aligned: 198 Modelled: 227 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis Phyre2 PDB 1k6d chain A Region: 43 - 231 Aligned: 178 Modelled: 187 Confidence: 100.0% Identity: 23% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 2ipx chain A Region: 32 - 65 Aligned: 34 Modelled: 34 Confidence: 56.0% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:rrna 2'-o-methyltransferase fibrillarin; PDBTitle: human fibrillarin Phyre2 1 c1xr4B_ 2 c2hj0A_ 3 c3gk7A_ 4 c2oasA_ 5 c2g39A_ 6 c2nvvF_ 7 c3eh7A_ 8 d1xr4a2 9 c3d3uA_ 10 d1xr4a1 11 c2ahvC_ 12 c1ooyA_ 13 d2g39a2 14 c3rrlC_ 15 c3cdkA_ 16 d1ooya1 17 d1ooya2 18 d2ahua2 19 c3cdkD_ 20 d1k6da_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 c2ipxA_ 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1xr4B_ 100.0 72 PDB header:hydrolase/transferase Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase; PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium] 2 c2hj0A_ 100.0 55 PDB header:lyase Chain: A: PDB Molecule:putative citrate lyase, alfa subunit; PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target). 3 c3gk7A_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum 4 c2oasA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. 5 c2g39A_ 100.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:acetyl-coa hydrolase; PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa 6 c2nvvF_ 100.0 18 PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. 7 c3eh7A_ 100.0 24 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 8 d1xr4a2 100.0 72 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 9 c3d3uA_ 100.0 26 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 10 d1xr4a1 100.0 70 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 11 c2ahvC_ 100.0 18 PDB header:transferase Chain: C: PDB Molecule:putative enzyme ydif; PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1 12 c1ooyA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase, PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart 13 d2g39a2 100.0 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 14 c3rrlC_ 100.0 24 PDB header:transferase Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a; PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695 15 c3cdkA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis 16 d1ooya1 100.0 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 17 d1ooya2 100.0 27 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 18 d2ahua2 100.0 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 19 c3cdkD_ 100.0 15 PDB header:transferase Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis 20 d1k6da_ 100.0 23 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 21 d1poia_ not modelled 100.0 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 22 d2g39a1 not modelled 99.9 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 23 d2ahua1 not modelled 99.9 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 24 d1poib_ not modelled 99.9 24 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 25 c1m0sA_ not modelled 97.7 15 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 26 c1lk5C_ not modelled 97.6 21 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 27 c3kwmC_ not modelled 97.5 23 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 28 c2f8mB_ not modelled 97.5 18 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum 29 d1m0sa1 not modelled 97.5 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 30 c1lkzB_ not modelled 97.4 19 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 31 c3l7oB_ not modelled 97.3 18 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 32 c1uj6A_ not modelled 97.0 21 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 33 c3hheA_ not modelled 97.0 15 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae 34 d1uj4a1 not modelled 96.7 21 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 35 d1lk5a1 not modelled 96.2 22 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 36 c3u7jA_ not modelled 95.6 21 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 37 c2pjmA_ not modelled 95.3 15 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 38 c3ecsD_ not modelled 88.9 17 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 39 d1vb5a_ not modelled 86.3 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 40 c3a11D_ not modelled 83.3 15 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 41 c1xtzA_ not modelled 80.2 19 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes 42 c2yvkA_ not modelled 78.5 17 PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis 43 d1t9ka_ not modelled 77.5 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 44 c3e4fB_ not modelled 75.2 29 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 45 d2nyga1 not modelled 69.9 33 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Aminoglycoside 3-N-acetyltransferase-like 46 c3smaD_ not modelled 66.8 21 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 47 d1o8bb1 not modelled 64.4 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 48 c2ipxA_ 56.0 24 PDB header:transferase Chain: A: PDB Molecule:rrna 2'-o-methyltransferase fibrillarin; PDBTitle: human fibrillarin 49 d1t5oa_ not modelled 50.7 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 50 c1w2wJ_ not modelled 36.8 23 PDB header:isomerase Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 51 d1udxa3 not modelled 33.1 35 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 52 d1g8sa_ not modelled 29.2 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Fibrillarin homologue 53 d1g8aa_ not modelled 28.3 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Fibrillarin homologue 54 c3myrE_ not modelled 28.0 7 PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 55 d2a0ua1 not modelled 26.1 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 56 d1vmha_ not modelled 25.6 36 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 57 c2q24A_ not modelled 24.8 16 PDB header:transcription Chain: A: PDB Molecule:putative tetr family transcriptional regulator; PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor 58 c3id5F_ not modelled 24.6 18 PDB header:transferase/ribosomal protein/rna Chain: F: PDB Molecule:fibrillarin-like rrna/trna 2'-o-methyltransferase; PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp assembled with2 nop5, fibrillarin, l7ae and a split half c/d rna 59 c3rgwS_ not modelled 24.3 9 PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster 60 d1x87a_ not modelled 23.4 21 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 61 d1e8oa_ not modelled 23.2 13 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 62 c2wpnA_ not modelled 21.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 63 d1vmfa_ not modelled 21.7 20 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 64 c2qqdG_ not modelled 20.8 20 PDB header:lyase Chain: G: PDB Molecule:pyruvoyl-dependent arginine decarboxylase (ec PDBTitle: n47a mutant of pyruvoyl-dependent arginine decarboxylase2 from methanococcus jannashii 65 c2p6hB_ not modelled 20.0 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of hypothetical protein ape1520 from aeropyrum2 pernix k1 66 d1nt2a_ not modelled 19.8 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Fibrillarin homologue 67 d1prya_ not modelled 19.7 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Fibrillarin homologue 68 d1v7ba1 not modelled 17.5 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 69 c2fknC_ not modelled 17.3 21 PDB header:lyase Chain: C: PDB Molecule:urocanate hydratase; PDBTitle: crystal structure of urocanase from bacillus subtilis 70 d2gena1 not modelled 15.7 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 71 c3qbzA_ not modelled 15.5 20 PDB header:cell cycle Chain: A: PDB Molecule:ddk kinase regulatory subunit dbf4; PDBTitle: crystal structure of the rad53-recognition domain of saccharomyces2 cerevisiae dbf4 72 d3c07a1 not modelled 15.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 73 d1ni9a_ not modelled 15.4 13 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:GlpX-like bacterial fructose-1,6-bisphosphatase 74 d1t33a1 not modelled 15.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 75 c3bnvD_ not modelled 14.3 12 PDB header:unknown function Chain: D: PDB Molecule:cj0977; PDBTitle: crystal structure of cj0977, a sigma28-regulated virulence protein2 from campylobacter jejuni. 76 d2o7ta1 not modelled 14.2 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 77 d1vi0a1 not modelled 13.4 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 78 d2vkea1 not modelled 13.1 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 79 d1vpha_ not modelled 13.0 18 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 80 c3jsjC_ not modelled 12.9 20 PDB header:transcription Chain: C: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a putative tetr-transcriptional regulator2 (sav143) from streptomyces avermitilis ma-4680 at 2.10 a resolution 81 c2p6cB_ not modelled 12.9 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:aq_2013 protein; PDBTitle: crystal structure of hypothetical protein aq_2013 from aquifex2 aeolicus vf5. 82 c1h2aS_ not modelled 12.3 13 PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 83 d1wuis1 not modelled 12.3 13 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 84 c1k5hB_ not modelled 12.2 28 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose-5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose-5-phosphate reductoisomerase 85 d1duvg2 not modelled 12.1 24 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 86 d1i8fa_ not modelled 12.0 21 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 87 d1914a1 not modelled 12.0 13 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 88 c2d6yA_ not modelled 11.7 11 PDB header:gene regulation Chain: A: PDB Molecule:putative tetr family regulatory protein; PDBTitle: crystal structure of transcriptional factor sco4008 from streptomyces2 coelicolor a3(2) 89 c2w48D_ not modelled 11.6 14 PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae 90 c1vi0B_ not modelled 11.5 13 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator 91 d2atca2 not modelled 11.2 12 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 92 d3efba1 not modelled 11.0 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 93 d1vmja_ not modelled 10.8 32 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 94 c2jvfA_ not modelled 10.7 16 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 95 d2nvma1 not modelled 10.5 37 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 96 d2nlva1 not modelled 10.5 47 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 97 d1dxha2 not modelled 10.4 16 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 98 c3e0vB_ not modelled 10.3 21 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions 99 d1uwka_ not modelled 10.2 19 Fold:Urocanase Superfamily:Urocanase Family:Urocanase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0