Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33898
DateThu Jan 5 11:52:40 GMT 2012
Unique Job ID7380d059a0c20ba5

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1i32D_
Top template information
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors
Confidence and coverage
Confidence:100.0% Coverage: 98%
328 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSKVGINGFGRIGRLVLGRLLEVKSNIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDF
Secondary structure 



























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Disorder  ??



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   .........70.........80.........90.........100.........110.........120
Sequence  TEDSLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLIS
Secondary structure 























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   .........130.........140.........150.........160.........170.........180
Sequence  APAGEMKTIVYNVNDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYT
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   .........190.........200.........210.........220.........230.........240
Sequence  GTQSLVDGPRGKDLRASRAAAENIIPHTTGAAKAIGLVIPELSGKLKGHAQRVPVKTGSV
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?


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   .........250.........260.........270.........280.........290.........300
Sequence  TELVSILGKKVTAEEVNNALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITA
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?

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   .........310.........320.........330...
Sequence  VGDLQLVKTVAWYDNEYGFVTQLIRTLEKFAKL
Secondary structure 








SS confidence 
































Disorder 






























??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1i32 chain D

3D model

Region: 2 - 332
Aligned: 328
Modelled: 331
Confidence: 100.0%
Identity: 45%
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors

Phyre2

PDB 3hq4 chain R

3D model

Region: 1 - 333
Aligned: 330
Modelled: 333
Confidence: 100.0%
Identity: 58%
PDB header:oxidoreductase
Chain: R: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1;
PDBTitle: crystal structure of c151s mutant of glyceraldehyde-3-phosphate2 dehydrogenase 1 (gapdh1) complexed with nad from staphylococcus3 aureus mrsa252 at 2.2 angstrom resolution

Phyre2

PDB 2ep7 chain B

3D model

Region: 2 - 332
Aligned: 325
Modelled: 331
Confidence: 100.0%
Identity: 49%
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: structural study of project id aq_1065 from aquifex aeolicus vf5

Phyre2

PDB 3doc chain D

3D model

Region: 2 - 333
Aligned: 328
Modelled: 332
Confidence: 100.0%
Identity: 48%
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of trka glyceraldehyde-3-phosphate2 dehydrogenase from brucella melitensis

Phyre2

PDB 1ihx chain D

3D model

Region: 3 - 333
Aligned: 326
Modelled: 331
Confidence: 100.0%
Identity: 48%
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of two d-glyceraldehyde-3-phosphate2 dehydrogenase complexes: a case of asymmetry

Phyre2

PDB 3h9e chain A

3D model

Region: 2 - 332
Aligned: 326
Modelled: 0
Confidence: 100.0%
Identity: 46%
PDB header:oxidoreductase
Chain: A: PDB Molecule:
PDBTitle: crystal structure of human sperm-specific glyceraldehyde-3-phosphate2 dehydrogenase (gapds) complex with nad and phosphate

Phyre2

PDB 1hdg chain O

3D model

Region: 3 - 333
Aligned: 327
Modelled: 331
Confidence: 100.0%
Identity: 54%
PDB header:oxidoreductase (aldehy(d)-nad(a))
Chain: O: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: the crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase2 from the hyperthermophilic bacterium thermotoga maritima at 2.53 angstroms resolution

Phyre2

PDB 2b4r chain Q

3D model

Region: 2 - 332
Aligned: 327
Modelled: 331
Confidence: 100.0%
Identity: 45%
PDB header:oxidoreductase
Chain: Q: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 plasmodium falciparum at 2.25 angstrom resolution reveals intriguing3 extra electron density in the active site

Phyre2

PDB 1obf chain O

3D model

Region: 2 - 332
Aligned: 325
Modelled: 331
Confidence: 100.0%
Identity: 44%
PDB header:glycolytic pathway
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: the crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from alcaligenes xylosoxidans at 1.73 resolution.

Phyre2

PDB 1rm4 chain O

3D model

Region: 2 - 332
Aligned: 327
Modelled: 331
Confidence: 100.0%
Identity: 45%
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a;
PDBTitle: crystal structure of recombinant photosynthetic glyceraldehyde-3-2 phosphate dehydrogenase a4 isoform, complexed with nadp

Phyre2

PDB 3hja chain B

3D model

Region: 2 - 330
Aligned: 323
Modelled: 326
Confidence: 100.0%
Identity: 50%
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase from borrelia burgdorferi

Phyre2

PDB 2pkr chain I

3D model

Region: 2 - 332
Aligned: 327
Modelled: 331
Confidence: 100.0%
Identity: 45%
PDB header:oxidoreductase
Chain: I: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase aor;
PDBTitle: crystal structure of (a+cte)4 chimeric form of2 photosyntetic glyceraldehyde-3-phosphate dehydrogenase,3 complexed with nadp

Phyre2

PDB 2d2i chain O

3D model

Region: 1 - 332
Aligned: 328
Modelled: 332
Confidence: 100.0%
Identity: 45%
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-2 phosphate dehydrogenase from synechococcus sp. complexed3 with nadp+

Phyre2

PDB 3cie chain C

3D model

Region: 2 - 332
Aligned: 327
Modelled: 331
Confidence: 100.0%
Identity: 47%
PDB header:oxidoreductase
Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from cryptosporidium parvum

Phyre2

PDB 3b20 chain R

3D model

Region: 1 - 332
Aligned: 328
Modelled: 332
Confidence: 100.0%
Identity: 45%
PDB header:oxidoreductase
Chain: R: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase (nadp+);
PDBTitle: crystal structure analysis of dehydrogenase complexed with nad

Phyre2

PDB 1cer chain C

3D model

Region: 2 - 332
Aligned: 324
Modelled: 331
Confidence: 100.0%
Identity: 50%
PDB header:oxidoreductase (aldehyde(d)-nad(a))
Chain: C: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: determinants of enzyme thermostability observed in the2 molecular structure of thermus aquaticus d-glyceraldehyde-3 3-phosphate dehydrogenase at 2.5 angstroms resolution

Phyre2

PDB 2x5k chain O

3D model

Region: 2 - 333
Aligned: 323
Modelled: 332
Confidence: 100.0%
Identity: 40%
PDB header:oxidoreductase
Chain: O: PDB Molecule:d-erythrose-4-phosphate dehydrogenase;
PDBTitle: structure of an active site mutant of the d-erythrose-4-phosphate2 dehydrogenase from e. coli

Phyre2

PDB 1s7c chain A

3D model

Region: 2 - 332
Aligned: 326
Modelled: 331
Confidence: 100.0%
Identity: 46%
PDB header:structural genomics, oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a;
PDBTitle: crystal structure of mes buffer bound form of glyceraldehyde 3-2 phosphate dehydrogenase from escherichia coli

Phyre2

PDB 2i5p chain O

3D model

Region: 1 - 331
Aligned: 306
Modelled: 311
Confidence: 100.0%
Identity: 48%
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase isoform 1 from k. marxianus

Phyre2

PDB 3sth chain A

3D model

Region: 1 - 332
Aligned: 328
Modelled: 332
Confidence: 100.0%
Identity: 49%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 toxoplasma gondii

Phyre2
1

c1i32D_
2

c3hq4R_
3

c2ep7B_
4

c3docD_
5

c1ihxD_
6

c3h9eA_
7

c1hdgO_
8

c2b4rQ_
9

c1obfO_
10

c1rm4O_
11

c3hjaB_
12

c2pkrI_
13

c2d2iO_
14

c3cieC_
15

c3b20R_
16

c1cerC_
17

c2x5kO_
18

c1s7cA_
19

c2i5pO_
20

c3sthA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1i32D_



100.0 45 PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors
2c3hq4R_



100.0 58 PDB header:oxidoreductase
Chain: R: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1;
PDBTitle: crystal structure of c151s mutant of glyceraldehyde-3-phosphate2 dehydrogenase 1 (gapdh1) complexed with nad from staphylococcus3 aureus mrsa252 at 2.2 angstrom resolution
3c2ep7B_



100.0 49 PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: structural study of project id aq_1065 from aquifex aeolicus vf5
4c3docD_



100.0 48 PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of trka glyceraldehyde-3-phosphate2 dehydrogenase from brucella melitensis
5c1ihxD_



100.0 48 PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of two d-glyceraldehyde-3-phosphate2 dehydrogenase complexes: a case of asymmetry
6c3h9eA_



100.0 46 PDB header:oxidoreductase
Chain: A: PDB Molecule:
PDBTitle: crystal structure of human sperm-specific glyceraldehyde-3-phosphate2 dehydrogenase (gapds) complex with nad and phosphate
7c1hdgO_



100.0 54 PDB header:oxidoreductase (aldehy(d)-nad(a))
Chain: O: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: the crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase2 from the hyperthermophilic bacterium thermotoga maritima at 2.53 angstroms resolution
8c2b4rQ_



100.0 45 PDB header:oxidoreductase
Chain: Q: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 plasmodium falciparum at 2.25 angstrom resolution reveals intriguing3 extra electron density in the active site
9c1obfO_



100.0 44 PDB header:glycolytic pathway
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: the crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from alcaligenes xylosoxidans at 1.73 resolution.
10c1rm4O_



100.0 45 PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a;
PDBTitle: crystal structure of recombinant photosynthetic glyceraldehyde-3-2 phosphate dehydrogenase a4 isoform, complexed with nadp
11c3hjaB_



100.0 50 PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase from borrelia burgdorferi
12c2pkrI_



100.0 45 PDB header:oxidoreductase
Chain: I: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase aor;
PDBTitle: crystal structure of (a+cte)4 chimeric form of2 photosyntetic glyceraldehyde-3-phosphate dehydrogenase,3 complexed with nadp
13c2d2iO_



100.0 45 PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-2 phosphate dehydrogenase from synechococcus sp. complexed3 with nadp+
14c3cieC_



100.0 47 PDB header:oxidoreductase
Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from cryptosporidium parvum
15c3b20R_



100.0 45 PDB header:oxidoreductase
Chain: R: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase (nadp+);
PDBTitle: crystal structure analysis of dehydrogenase complexed with nad
16c1cerC_



100.0 50 PDB header:oxidoreductase (aldehyde(d)-nad(a))
Chain: C: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: determinants of enzyme thermostability observed in the2 molecular structure of thermus aquaticus d-glyceraldehyde-3 3-phosphate dehydrogenase at 2.5 angstroms resolution
17c2x5kO_



100.0 40 PDB header:oxidoreductase
Chain: O: PDB Molecule:d-erythrose-4-phosphate dehydrogenase;
PDBTitle: structure of an active site mutant of the d-erythrose-4-phosphate2 dehydrogenase from e. coli
18c1s7cA_



100.0 46 PDB header:structural genomics, oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a;
PDBTitle: crystal structure of mes buffer bound form of glyceraldehyde 3-2 phosphate dehydrogenase from escherichia coli
19c2i5pO_



100.0 48 PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase isoform 1 from k. marxianus
20c3sthA_



100.0 49 PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 toxoplasma gondii
21c2gd1P_



not modelled 100.0 52 PDB header:oxidoreductase(aldehyde(d)-nad(a))
Chain: P: PDB Molecule:apo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: coenzyme-induced conformational changes in glyceraldehyde-3-2 phosphate dehydrogenase from bacillus stearothermophillus
22c2yyyB_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase
23c1cf2Q_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: Q: PDB Molecule:protein (glyceraldehyde-3-phosphate
PDBTitle: three-dimensional structure of d-glyceraldehyde-3-phosphate2 dehydrogenase from the hyperthermophilic archaeon3 methanothermus fervidus
24c1b7gO_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: O: PDB Molecule:protein (glyceraldehyde 3-phosphate dehydrogenase);
PDBTitle: glyceraldehyde 3-phosphate dehydrogenase
25d1gado2



not modelled 100.0 51 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
26d1u8fo2



not modelled 100.0 50 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
27d3cmco2



not modelled 100.0 57 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
28c2czcD_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 pyrococcus horikoshii ot3
29d1rm4a2



not modelled 100.0 49 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
30d2b4ro2



not modelled 100.0 52 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
31d1ggaa2



not modelled 100.0 50 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
32d3gpdg2



not modelled 100.0 51 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
33d1dssg2



not modelled 100.0 51 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
34d1i32a2



not modelled 100.0 49 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
35d1k3ta2



not modelled 100.0 49 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
36d2pkqo2



not modelled 100.0 51 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
37d2g82a2



not modelled 100.0 52 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
38d1hdgo2



not modelled 100.0 55 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
39d1obfo2



not modelled 100.0 45 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
40d3cmco1



not modelled 100.0 44 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
41d1u8fo1



not modelled 100.0 37 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
42d1hdgo1



not modelled 100.0 48 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
43d1j0xo1



not modelled 100.0 39 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
44d3gpdg1



not modelled 100.0 35 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
45d1gado1



not modelled 100.0 40 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
46d2g82a1



not modelled 100.0 46 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
47d1vc2a1



not modelled 100.0 49 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
48d1dssg1



not modelled 100.0 41 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
49d1rm4a1



not modelled 100.0 41 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
50d1ggaa1



not modelled 100.0 40 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
51d1k3ta1



not modelled 100.0 38 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
52d1obfo1



not modelled 100.0 41 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
53d2b4ro1



not modelled 100.0 40 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
54d1i32a1



not modelled 100.0 35 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
55d2pkqo1



not modelled 100.0 35 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
56c2qz9B_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 ii from vibrio cholerae
57c2ep5B_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:350aa long hypothetical aspartate-semialdehyde
PDBTitle: structural study of project id st1242 from sulfolobus tokodaii strain7
58c2yv3B_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase from thermus2 thermophilus hb8
59c3uw3A_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: crystal structure of an aspartate-semialdehyde dehydrogenase from2 burkholderia thailandensis
60c2g17A_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:n-acetyl-gamma-glutamyl-phosphate reductase;
PDBTitle: the structure of n-acetyl-gamma-glutamyl-phosphate reductase from2 salmonella typhimurium.
61c2gz3D_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: D: PDB Molecule:aspartate beta-semialdehyde dehydrogenase;
PDBTitle: structure of aspartate semialdehyde dehydrogenase (asadh) from2 streptococcus pneumoniae complexed with nadp and aspartate-3 semialdehyde
62c1ys4A_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: structure of aspartate-semialdehyde dehydrogenase from2 methanococcus jannaschii
63c1t4bB_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: 1.6 angstrom structure of esherichia coli aspartate-2 semialdehyde dehydrogenase.
64c3kubA_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: crystal structure of aspartate semi-aldehyde dehydrogenase complexed2 with glycerol and phosphate of mycobacterium tuberculosis h37rv
65c2q49B_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:probable n-acetyl-gamma-glutamyl-phosphate reductase;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at2g19940
66c1mb4B_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 from vibrio cholerae with nadp and s-methyl-l-cysteine3 sulfoxide
67d1cf2o1



not modelled 100.0 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
68c2ozpA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:n-acetyl-gamma-glutamyl-phosphate reductase;
PDBTitle: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase2 (ttha1904) from thermus thermophilus
69c2hjsA_



not modelled 100.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:usg-1 protein homolog;
PDBTitle: the structure of a probable aspartate-semialdehyde dehydrogenase from2 pseudomonas aeruginosa
70c2i3aD_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:n-acetyl-gamma-glutamyl-phosphate reductase;
PDBTitle: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase2 (rv1652) from mycobacterium tuberculosis
71c3hskB_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 with nadp from candida albicans
72c1vknC_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: C: PDB Molecule:n-acetyl-gamma-glutamyl-phosphate reductase;
PDBTitle: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase2 (tm1782) from thermotoga maritima at 1.80 a resolution
73d2gz1a1



not modelled 100.0 24 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
74d1pqua2



not modelled 99.9 20 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
75d1t4ba2



not modelled 99.9 17 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
76d1mb4a2



not modelled 99.9 20 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
77d2gz1a2



not modelled 99.9 17 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
78d2hjsa2



not modelled 99.8 18 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
79d1t4ba1



not modelled 99.8 24 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
80d2czca2



not modelled 99.8 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
81d2hjsa1



not modelled 99.8 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
82d1pqua1



not modelled 99.7 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
83d2g17a1



not modelled 99.7 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
84d2cvoa1



not modelled 99.7 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
85d1mb4a1



not modelled 99.7 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
86d1vkna1



not modelled 99.7 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
87d2q49a1



not modelled 99.6 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
88d1b7go1



not modelled 99.6 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
89d1cf2o2



not modelled 99.6 20 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
90d1b7go2



not modelled 99.6 17 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
91d2cvoa2



not modelled 99.5 14 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
92d2czca1



not modelled 99.4 20 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
93c1nvmB_



not modelled 98.8 16 PDB header:lyase/oxidoreductase
Chain: B: PDB Molecule:acetaldehyde dehydrogenase (acylating);
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
94c1drwA_



not modelled 98.7 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: escherichia coli dhpr/nhdh complex
95c3ijpA_



not modelled 98.6 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: crystal structure of dihydrodipicolinate reductase from2 bartonella henselae at 2.0a resolution
96d1nvmb1



not modelled 98.3 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
97c3bioB_



not modelled 98.3 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase (gfo/idh/moca family member) from2 porphyromonas gingivalis w83
98c2z2vA_



not modelled 98.2 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1688;
PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii
99c3dapB_



not modelled 98.2 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase;
PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline
100d1q0qa2



not modelled 98.2 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
101c3a14B_



not modelled 98.2 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph
102c2ho3D_



not modelled 98.1 21 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase, gfo/idh/moca family from2 streptococcus pneumoniae
103d1diha1



not modelled 98.1 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
104d1r0ka2



not modelled 98.1 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
105c2dc1A_



not modelled 98.1 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate dehydrogenase;
PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus
106d1f06a1



not modelled 98.1 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
107c1yl7F_



not modelled 98.1 19 PDB header:oxidoreductase
Chain: F: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: the crystal structure of mycobacterium tuberculosis2 dihydrodipicolinate reductase (rv2773c) in complex with nadh (crystal3 form c)
108c3mtjA_



not modelled 98.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a
109c1r0lD_



not modelled 98.0 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph
110c3do5A_



not modelled 98.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of putative homoserine dehydrogenase (np_069768.1)2 from archaeoglobus fulgidus at 2.20 a resolution
111d1yl7a1



not modelled 98.0 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
112c3e9mC_



not modelled 98.0 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis
113c3fhlC_



not modelled 97.9 24 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from bacteroides2 fragilis nctc 9343
114c2axqA_



not modelled 97.9 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
115c2ixaA_



not modelled 97.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase;
PDBTitle: a-zyme, n-acetylgalactosaminidase
116c3m2tA_



not modelled 97.9 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from chromobacterium2 violaceum
117c3ic5A_



not modelled 97.9 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative saccharopine dehydrogenase;
PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi.
118d1ydwa1



not modelled 97.9 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
119c3e18A_



not modelled 97.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of nad-binding protein from listeria innocua
120c3euwB_



not modelled 97.8 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:myo-inositol dehydrogenase;
PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0