PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1mb4B_

Fold library id	PDB Header	Molecule	Title
c1mb4B_	PDB header: oxidoreductase	Chain: B: PDB Molecule: aspartate-semialdehyde dehydrogenase;	PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 from vibrio cholerae with nadp and s-methyl-l-cysteine3 sulfoxide

Links to external resources
Added to library: Tue Mar 16 12:47:59 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M R V G L V G W R G M V G S V L M Q R M V E E R D F D L I E P V F F S T S Q I G V P A P N F G K D A G M L H D A F D I E S L K Q L D A V I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S T T G G G T S S S
T T S B
S S S
B
T T
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C Q G G S Y T E K V Y P A L R Q A G W K G Y W I D A A S T L R M D K E A I I T L D P V N L K Q I L H G I H H G T K T F V G G N C T V S L M L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S S S T T T T
T T
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M A L G G L Y E R G L V E W M S A M T Y Q A A S G A G A Q N M R E L I S Q M G V I N D A V S S E L A N P A S S I L D I D K K V A E T M R S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G G
T T S
S T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence S F P T D N F G V P L A G S L I P W I D V K R D N G Q S K E E W K A G V E A N K I L G L Q D S P V P I D G T C V R I G A M R C H S Q A L T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T T S S
T T S
B S
S
B
T T S
B T
T T S
S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence K L K Q N I P L D E I E E M I A T H N D W V K V I P N E R D I T A R E L T P A K V T G T L S V P V G R L R K M A M G D D F L N A F T V G D Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
S S
S
S S T T S
T T T

. . . . . . . . . 360 . . . . . . . . . 370

Sequence L L W G A A E P L R R T L R I I L A E C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	R	V	G	L	V	G	W	R	G	M	V	G	S	V	L	M	Q	R	M	V	E	E	R	D	F	D	L	I	E	P	V	F	F	S	T	S	Q	I	G	V	P	A	P	N	F	G	K	D	A	G	M	L	H	D	A	F	D	I	E	S	L	K	Q	L	D	A	V	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	T	T	S													T	T	G	G	G	T	S							S	S		T	T	S	B				S	S	S				B				T	T						T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	Q	G	G	S	Y	T	E	K	V	Y	P	A	L	R	Q	A	G	W	K	G	Y	W	I	D	A	A	S	T	L	R	M	D	K	E	A	I	I	T	L	D	P	V	N	L	K	Q	I	L	H	G	I	H	H	G	T	K	T	F	V	G	G	N	C	T	V	S	L	M	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S															T	T			S					S	S	S	T	T	T	T		T	T																		T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	A	L	G	G	L	Y	E	R	G	L	V	E	W	M	S	A	M	T	Y	Q	A	A	S	G	A	G	A	Q	N	M	R	E	L	I	S	Q	M	G	V	I	N	D	A	V	S	S	E	L	A	N	P	A	S	S	I	L	D	I	D	K	K	V	A	E	T	M	R	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T													G	G	G	G																										T	T	S															S	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	S	F	P	T	D	N	F	G	V	P	L	A	G	S	L	I	P	W	I	D	V	K	R	D	N	G	Q	S	K	E	E	W	K	A	G	V	E	A	N	K	I	L	G	L	Q	D	S	P	V	P	I	D	G	T	C	V	R	I	G	A	M	R	C	H	S	Q	A	L	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S			T	T	T	S	S			T	T	S		B	S			S		B		T	T	S		B															T		T	T	S												S		S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	K	L	K	Q	N	I	P	L	D	E	I	E	E	M	I	A	T	H	N	D	W	V	K	V	I	P	N	E	R	D	I	T	A	R	E	L	T	P	A	K	V	T	G	T	L	S	V	P	V	G	R	L	R	K	M	A	M	G	D	D	F	L	N	A	F	T	V	G	D	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S													T	T		S	S						S									S	S					T	T	S												T	T													T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Sequence	L	L	W	G	A	A	E	P	L	R	R	T	L	R	I	I	L	A	E	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	T