Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	T	N	W	Q	V	C	S	L	V	V	Q	A	K	S	E	R	I	S	D	I	S	T	Q	L	N	A	F	P	G	C	E	V	A	V	S	D	A	P	S	G	Q	L	I	V	V	V	E	A	E	D	S	E	T	L	I	Q	T	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Sequence		E	S	V	R	N	V	E	G	V	L	A	V	S	L	V	Y	H	Q	Q	E	E	Q	G	E	E	T	P
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jsx chain A Region: 1 - 87 Aligned: 87 Modelled: 87 Confidence: 100.0% Identity: 100% PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd Phyre2 PDB 2cyy chain A domain 2 Region: 10 - 73 Aligned: 64 Modelled: 64 Confidence: 97.2% Identity: 17% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 2zbc chain H Region: 10 - 73 Aligned: 64 Modelled: 64 Confidence: 97.2% Identity: 13% PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. Phyre2 PDB 2e1a chain D Region: 10 - 73 Aligned: 64 Modelled: 64 Confidence: 96.9% Identity: 22% PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 Phyre2 PDB 1i1g chain A domain 2 Region: 10 - 73 Aligned: 64 Modelled: 64 Confidence: 96.8% Identity: 22% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 2djw chain F Region: 10 - 73 Aligned: 64 Modelled: 64 Confidence: 96.8% Identity: 17% PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 Phyre2 PDB 2e1c chain A Region: 10 - 73 Aligned: 64 Modelled: 64 Confidence: 96.8% Identity: 17% PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex Phyre2 PDB 1i1g chain A Region: 10 - 73 Aligned: 64 Modelled: 64 Confidence: 96.3% Identity: 22% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus Phyre2 PDB 2cg4 chain A domain 2 Region: 10 - 73 Aligned: 64 Modelled: 64 Confidence: 96.3% Identity: 9% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 2dbb chain A Region: 8 - 73 Aligned: 66 Modelled: 66 Confidence: 94.5% Identity: 9% PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 Phyre2 PDB 3ibw chain A Region: 9 - 73 Aligned: 64 Modelled: 65 Confidence: 94.3% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 PDB 2e7x chain A Region: 5 - 73 Aligned: 69 Modelled: 69 Confidence: 93.9% Identity: 16% PDB header:transcription regulator Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator; PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand Phyre2 PDB 3i4p chain A Region: 5 - 76 Aligned: 72 Modelled: 72 Confidence: 93.9% Identity: 13% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, asnc family; PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens Phyre2 PDB 2cfx chain A domain 2 Region: 10 - 81 Aligned: 71 Modelled: 72 Confidence: 93.7% Identity: 11% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 2vbz chain A Region: 4 - 75 Aligned: 72 Modelled: 72 Confidence: 93.4% Identity: 14% PDB header:dna-binding protein Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan Phyre2 PDB 2cg4 chain B Region: 5 - 73 Aligned: 69 Modelled: 69 Confidence: 93.2% Identity: 6% PDB header:transcription Chain: B: PDB Molecule:regulatory protein asnc; PDBTitle: structure of e.coli asnc Phyre2 PDB 2cfx chain D Region: 10 - 73 Aligned: 61 Modelled: 64 Confidence: 92.3% Identity: 13% PDB header:transcription Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc; PDBTitle: structure of b.subtilis lrpc Phyre2 PDB 2p6t chain H Region: 5 - 76 Aligned: 72 Modelled: 72 Confidence: 91.7% Identity: 7% PDB header:transcription Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family; PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis Phyre2 PDB 1sc6 chain A domain 3 Region: 6 - 76 Aligned: 69 Modelled: 71 Confidence: 91.6% Identity: 13% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 2c5s chain A domain 2 Region: 19 - 85 Aligned: 60 Modelled: 67 Confidence: 90.6% Identity: 17% Fold: THUMP domain Superfamily: THUMP domain-like Family: THUMP domain Phyre2 1 c2jsxA_ 2 d2cyya2 3 c2zbcH_ 4 c2e1aD_ 5 d1i1ga2 6 c2djwF_ 7 c2e1cA_ 8 c1i1gA_ 9 d2cg4a2 10 c2dbbA_ 11 c3ibwA_ 12 c2e7xA_ 13 c3i4pA_ 14 d2cfxa2 15 c2vbzA_ 16 c2cg4B_ 17 c2cfxD_ 18 c2p6tH_ 19 d1sc6a3 20 d2c5sa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jsxA_ 100.0 100 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 2 d2cyya2 97.2 17 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 3 c2zbcH_ 97.2 13 PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. 4 c2e1aD_ 96.9 22 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 5 d1i1ga2 96.8 22 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 6 c2djwF_ 96.8 17 PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 7 c2e1cA_ 96.8 17 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 8 c1i1gA_ 96.3 22 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus 9 d2cg4a2 96.3 9 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 10 c2dbbA_ 94.5 9 PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 11 c3ibwA_ 94.3 16 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 12 c2e7xA_ 93.9 16 PDB header:transcription regulator Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator; PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand 13 c3i4pA_ 93.9 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, asnc family; PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens 14 d2cfxa2 93.7 11 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 15 c2vbzA_ 93.4 14 PDB header:dna-binding protein Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan 16 c2cg4B_ 93.2 6 PDB header:transcription Chain: B: PDB Molecule:regulatory protein asnc; PDBTitle: structure of e.coli asnc 17 c2cfxD_ 92.3 13 PDB header:transcription Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc; PDBTitle: structure of b.subtilis lrpc 18 c2p6tH_ 91.7 7 PDB header:transcription Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family; PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis 19 d1sc6a3 91.6 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 20 d2c5sa2 90.6 17 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 21 d1o8ba2 not modelled 88.7 22 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 22 c2gqqB_ not modelled 88.0 8 PDB header:transcription Chain: B: PDB Molecule:leucine-responsive regulatory protein; PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp) 23 c2c5sA_ not modelled 86.8 17 PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain 24 c2ia0A_ not modelled 86.8 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864; PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864) 25 d1kona_ not modelled 84.3 26 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 26 d1vbka2 not modelled 82.4 19 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 27 d1m0sa2 not modelled 81.9 20 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 28 d1lk5a2 not modelled 77.5 11 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 29 d1mw7a_ not modelled 76.6 9 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 30 c1uj6A_ not modelled 74.3 14 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 31 c3u7jA_ not modelled 71.3 23 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 32 d2p5ma1 not modelled 65.1 7 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 33 d1b4ba_ not modelled 63.6 9 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 34 d1s6la1 not modelled 63.5 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 35 c1lk5C_ not modelled 63.2 11 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 36 c2f8mB_ not modelled 63.0 15 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum 37 d1ygya3 not modelled 60.7 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 38 c1rwuA_ not modelled 59.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli 39 d1rwua_ not modelled 59.6 15 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:YbeD-like 40 c3kwmC_ not modelled 59.5 17 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 41 d1uj4a2 not modelled 57.9 13 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 42 c3cagF_ not modelled 57.2 16 PDB header:dna binding protein Chain: F: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the oligomerization domain hexamer of the2 arginine repressor protein from mycobacterium tuberculosis in complex3 with 9 arginines. 43 c1vbkA_ not modelled 56.5 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 44 d1lfpa_ not modelled 56.0 15 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 45 c1xtzA_ not modelled 53.7 8 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes 46 c3sf5D_ not modelled 50.2 23 PDB header:chaperone Chain: D: PDB Molecule:urease accessory protein ureh; PDBTitle: crystal structure of helicobacter pylori urease accessory protein2 uref/h complex 47 c2pjmA_ not modelled 49.8 18 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 48 c3l7oB_ not modelled 49.0 11 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 49 d1mwza_ not modelled 48.9 7 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 50 c3dxsX_ not modelled 48.7 18 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 51 c3v4gA_ not modelled 45.6 15 PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6 52 c2gcfA_ not modelled 45.6 20 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 53 d1xxaa_ not modelled 44.9 11 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 54 c3l7pA_ not modelled 44.8 20 PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans 55 d1fe0a_ not modelled 44.3 23 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 56 c3ptwA_ not modelled 43.5 24 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from clostridium perfringens atcc 13124 57 c2rogA_ not modelled 43.1 25 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 58 c1m0sA_ not modelled 42.5 20 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 59 c3ereD_ not modelled 42.0 10 PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator 60 d1p6ta2 not modelled 42.0 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 61 c2kt2A_ not modelled 41.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 62 d1p6ta1 not modelled 41.3 20 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 63 c2l3mA_ not modelled 40.0 16 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 64 d2nzca1 not modelled 39.7 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:TM1266-like 65 d1czda2 not modelled 39.2 17 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 66 d1osda_ not modelled 37.5 9 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 67 c1b4aA_ not modelled 36.8 9 PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus 68 d2aw0a_ not modelled 36.7 20 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 69 c1yjrA_ not modelled 36.7 9 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 70 c1y3kA_ not modelled 33.3 13 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 71 c1lkzB_ not modelled 32.8 21 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 72 d1vk2a_ not modelled 32.4 16 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like 73 d1afia_ not modelled 32.1 9 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 74 c2crlA_ not modelled 31.6 11 PDB header:chaperone Chain: A: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase 75 d1cpza_ not modelled 30.5 6 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 76 c1ybaC_ not modelled 29.6 14 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: the active form of phosphoglycerate dehydrogenase 77 d1qupa2 not modelled 29.0 23 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 78 c2ofhX_ not modelled 28.6 20 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 79 c1qupA_ not modelled 27.1 23 PDB header:chaperone Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone; PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase 80 d1b77a2 not modelled 27.1 15 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 81 c2aj1A_ not modelled 26.3 13 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 82 c2ldiA_ not modelled 24.2 22 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 83 c2kkhA_ not modelled 24.0 18 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 84 d2qifa1 not modelled 23.4 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 85 c3qatB_ not modelled 23.1 21 PDB header:transferase Chain: B: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of acyl-carrier-protein-s-malonyltransferase from2 bartonella henselae 86 c2ga7A_ not modelled 23.0 29 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 87 c2ew9A_ not modelled 22.7 20 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of apowln5-6 88 d1s6ua_ not modelled 20.1 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 89 d1q8la_ not modelled 20.0 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 90 d2ggpb1 not modelled 19.9 20 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 91 d1kvja_ not modelled 19.8 14 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 92 c2rmlA_ not modelled 19.6 16 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting p-type atpase copa; PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa 93 d2pd1a1 not modelled 18.2 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PA3566-like 94 c1ygyA_ not modelled 17.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 95 c1u5tA_ not modelled 17.5 9 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 96 d2d8xa2 not modelled 17.4 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 97 c1b8hA_ not modelled 16.9 13 PDB header:transferase Chain: A: PDB Molecule:dna polymerase processivity component; PDBTitle: sliding clamp, dna polymerase 98 c2k2pA_ not modelled 16.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 99 c2yy3B_ not modelled 16.8 18 PDB header:translation Chain: B: PDB Molecule:elongation factor 1-beta; PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0