PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1b8hA_

Fold library id	PDB Header	Molecule	Title
c1b8hA_	PDB header: transferase	Chain: A: PDB Molecule: dna polymerase processivity component;	PDBTitle: sliding clamp, dna polymerase

Links to external resources
Added to library: Tue Mar 16 14:13:25 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K L S K D T I A I L K N F A S I N S G I L L S Q G K F I M T R A V N G T T Y A E A N I S D E I D F D V A L Y D L N S F L S I L S L V S D D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T S S
S
S
T T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A E I S M H T D G N I K I A D T R S T V Y W P A A D K S T I V F P N K P I Q F P V A S V I T E I K A E D L Q Q L L R V S R G L Q I D T I A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S S
G G G S
S S
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T N K D G K I V I N G Y N K V E D S G L T R P K Y S L T L T D Y D G S N N F N F V I N M A N M K I Q P G N Y K V M L W G A G D K V A A K F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T
T T
S
S
S
G G G
S S
T T

. . . . . . . . . 220 . . . . . . . .

Sequence S S Q V S Y V I A M E A D S T H D F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	L	S	K	D	T	I	A	I	L	K	N	F	A	S	I	N	S	G	I	L	L	S	Q	G	K	F	I	M	T	R	A	V	N	G	T	T	Y	A	E	A	N	I	S	D	E	I	D	F	D	V	A	L	Y	D	L	N	S	F	L	S	I	L	S	L	V	S	D	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S						S									T	T	S	S													S					S										T	T	S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	E	I	S	M	H	T	D	G	N	I	K	I	A	D	T	R	S	T	V	Y	W	P	A	A	D	K	S	T	I	V	F	P	N	K	P	I	Q	F	P	V	A	S	V	I	T	E	I	K	A	E	D	L	Q	Q	L	L	R	V	S	R	G	L	Q	I	D	T	I	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S	S						S	S										G	G	G	S				S	S								S																				T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	N	K	D	G	K	I	V	I	N	G	Y	N	K	V	E	D	S	G	L	T	R	P	K	Y	S	L	T	L	T	D	Y	D	G	S	N	N	F	N	F	V	I	N	M	A	N	M	K	I	Q	P	G	N	Y	K	V	M	L	W	G	A	G	D	K	V	A	A	K	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S									T	T	T		T	T			S		S											S									G	G	G					S	S										T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Sequence	S	S	Q	V	S	Y	V	I	A	M	E	A	D	S	T	H	D	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S									T	T