Email l.a.kelley@imperial.ac.uk Description P0A8T7 Date Wed Jan 25 15:20:19 GMT 2012 Unique Job ID 694a24a559587f5e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3iydD_ 100.0 100 PDB header:transcription/dna Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex 2 c3h0gA_ 100.0 24 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase ii subunit rpb1; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 3 d1twfa_ 100.0 24 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 4 d1smyd_ 100.0 52 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 5 c1i6hA_ 100.0 24 PDB header:transcription/dna-rna hybrid Chain: A: PDB Molecule:dna-directed rna polymerase ii largest subunit; PDBTitle: rna polymerase ii elongation complex 6 d1i6vd_ 100.0 51 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 7 c1i6vD_ 100.0 51 PDB header:transcription Chain: D: PDB Molecule:dna-directed rna polymerase; PDBTitle: thermus aquaticus core rna polymerase-rifampicin complex 8 d1ynjd1 100.0 58 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 9 c2pmzQ_ 100.0 31 PDB header:translation, transferase Chain: Q: PDB Molecule:dna-directed rna polymerase subunit a; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 10 c3qqcA_ 100.0 26 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain 11 c2pmzG_ 100.0 27 PDB header:translation, transferase Chain: G: PDB Molecule:dna-directed rna polymerase subunit a"; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 12 c2aukA_ 98.0 98 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of e. coli rna polymerase beta' g/g' insert 13 c2aujD_ 97.7 21 PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert 14 c3e7hA_ 96.2 18 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: the crystal structure of the beta subunit of the dna-2 directed rna polymerase from vibrio cholerae o1 biovar3 eltor 15 c2j7nA_ 89.8 27 PDB header:hydrolase Chain: A: PDB Molecule:rna-dependent rna polymerase; PDBTitle: structure of the rnai polymerase from neurospora crassa 16 c3ky9B_ 62.5 12 PDB header:apoptosis Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: autoinhibited vav1 17 d1nvmb2 56.4 15 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 18 d2f9yb1 48.4 21 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 19 c2f9yB_ 48.4 21 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 20 c1nvmB_ 47.0 15 PDB header:lyase/oxidoreductase Chain: B: PDB Molecule:acetaldehyde dehydrogenase (acylating); PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate 21 d1odha_ not modelled 46.7 21 Fold:GCM domain Superfamily:GCM domain Family:GCM domain 22 c2f9iD_ not modelled 45.7 16 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 23 c3hcjB_ not modelled 42.8 18 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form) 24 d1l1da_ not modelled 41.1 18 Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain 25 d1xm0a1 not modelled 41.1 18 Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain 26 c2lcqA_ not modelled 40.8 18 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 27 c3cezA_ not modelled 40.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei 28 c2l1uA_ not modelled 40.6 27 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein 29 c1dvbA_ not modelled 40.6 21 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 30 c3e0mB_ not modelled 37.7 18 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb 31 c3a44D_ not modelled 37.2 33 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 32 d2dk5a1 not modelled 36.6 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RPO3F domain-like 33 c2k8dA_ not modelled 36.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb; PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase 34 d2g9ha2 not modelled 34.6 71 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 35 c3bbnR_ not modelled 34.3 17 PDB header:ribosome Chain: R: PDB Molecule:ribosomal protein s18; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 36 d1s9va2 not modelled 33.4 57 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 37 c2vrwB_ not modelled 31.7 19 PDB header:signaling protein Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor 38 d2vnud2 not modelled 31.7 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 39 c2kc1A_ not modelled 31.5 22 PDB header:structural protein Chain: A: PDB Molecule:mkiaa1027 protein; PDBTitle: nmr structure of the f0 domain (residues 0-85) of the talin2 ferm domain 40 d2eppa1 not modelled 30.9 35 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 41 d1fnga2 not modelled 30.3 71 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 42 d1nmla1 not modelled 29.8 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 43 c3alrA_ not modelled 28.1 26 PDB header:metal binding protein Chain: A: PDB Molecule:nanos protein; PDBTitle: crystal structure of nanos 44 d1eb7a1 not modelled 28.1 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 45 c3bjiA_ not modelled 27.4 20 PDB header:signaling protein Chain: A: PDB Molecule:proto-oncogene vav; PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1 46 c2kaoA_ not modelled 26.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1; PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant) 47 d1x64a2 not modelled 26.8 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 48 c3mkrB_ not modelled 26.7 31 PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat 49 d1dw0a_ not modelled 26.5 15 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 50 d1jk8a2 not modelled 26.3 50 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 51 d1ekea_ not modelled 26.2 24 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 52 d1es0a2 not modelled 25.0 50 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 53 d1muja2 not modelled 24.9 50 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 54 c3mv2A_ not modelled 24.9 15 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 55 c3imkA_ not modelled 23.3 17 PDB header:metal binding protein Chain: A: PDB Molecule:putative molybdenum carrier protein; PDBTitle: crystal structure of putative molybdenum carrier protein (yp_461806.1)2 from syntrophus aciditrophicus sb at 1.45 a resolution 56 d1iqca1 not modelled 23.0 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 57 c3t6pA_ not modelled 22.8 16 PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 2; PDBTitle: iap antagonist-induced conformational change in ciap1 promotes e32 ligase activation via dimerization 58 d1b12a_ not modelled 22.4 12 Fold:LexA/Signal peptidase Superfamily:LexA/Signal peptidase Family:Type 1 signal peptidase 59 d1x62a1 not modelled 22.1 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 60 d1klua2 not modelled 21.5 50 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 61 d2p24a2 not modelled 21.4 50 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 62 d1iaka2 not modelled 21.4 50 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 63 d2coba1 not modelled 21.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Psq domain 64 c3df1R_ not modelled 21.3 20 PDB header:ribosome Chain: R: PDB Molecule:30s ribosomal protein s18; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with hygromycin b. this file contains the3 30s subunit of the first 70s ribosome, with hygromycin b4 bound. the entire crystal structure contains two 70s5 ribosomes. 65 c3zyqA_ not modelled 21.2 23 PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution 66 c2yhoE_ not modelled 21.0 31 PDB header:ligase Chain: E: PDB Molecule:e3 ubiquitin-protein ligase mylip; PDBTitle: the idol-ube2d complex mediates sterol-dependent degradation of the2 ldl receptor 67 d1zvpa2 not modelled 20.0 42 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 68 d1uvqa2 not modelled 19.9 50 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 69 d2qalr1 not modelled 19.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Ribosomal protein S18 Family:Ribosomal protein S18 70 c3nijA_ not modelled 19.3 21 PDB header:metal binding protein Chain: A: PDB Molecule:e3 ubiquitin-protein ligase ubr1; PDBTitle: the structure of ubr box (hiaa) 71 c1nltA_ not modelled 19.2 25 PDB header:protein transport Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: the crystal structure of hsp40 ydj1 72 c3d33B_ not modelled 19.0 13 PDB header:unknown function Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution 73 c1w8xN_ not modelled 19.0 57 PDB header:virus Chain: N: PDB Molecule:protein p31; PDBTitle: structural analysis of prd1 74 c3fl2A_ not modelled 18.9 19 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the ring domain of the e3 ubiquitin-2 protein ligase uhrf1 75 c2ftcP_ not modelled 18.6 32 PDB header:ribosome Chain: P: PDB Molecule:mitochondrial ribosomal protein l33 isoform a; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 76 d1ew4a_ not modelled 18.6 27 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 77 d1hk8a_ not modelled 18.4 17 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 78 c1hk8A_ not modelled 18.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 79 d2uubr1 not modelled 16.5 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Ribosomal protein S18 Family:Ribosomal protein S18 80 c2yu3A_ not modelled 16.3 12 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase iii 39 kda PDBTitle: solution structure of the domain swapped wingedhelix in dna-2 directed rna polymerase iii 39 kda polypeptide 81 c3npeA_ not modelled 16.1 10 PDB header:oxidoreductase Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic; PDBTitle: structure of vp14 in complex with oxygen 82 c2ysaA_ not modelled 16.1 29 PDB header:metal binding protein Chain: A: PDB Molecule:retinoblastoma-binding protein 6; PDBTitle: solution structure of the zinc finger cchc domain from the2 human retinoblastoma-binding protein 6 (retinoblastoma-3 binding q protein 1, rbq-1) 83 c2kkeA_ not modelled 15.4 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a dimeric protein of unknown2 function from methanobacterium thermoautotrophicum,3 northeast structural genomics consortium target tr5 84 d1i94r_ not modelled 15.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Ribosomal protein S18 Family:Ribosomal protein S18 85 c2riqA_ not modelled 15.1 13 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 86 d1wiia_ not modelled 15.0 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 87 d1gu2a_ not modelled 14.9 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 88 d2fug21 not modelled 14.9 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 89 c2kdxA_ not modelled 14.7 14 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 90 c3fybA_ not modelled 14.6 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function (duf1244); PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis 91 d2dula1 not modelled 14.3 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TRM1-like 92 c3fzeA_ not modelled 14.2 21 PDB header:protein binding Chain: A: PDB Molecule:protein ste5; PDBTitle: structure of the 'minimal scaffold' (ms) domain of ste52 that cocatalyzes fus3 phosphorylation by ste7 93 c2kmaA_ not modelled 14.2 22 PDB header:structural protein Chain: A: PDB Molecule:talin 1; PDBTitle: nmr structure of the f0f1 double domain (residues 1-202) of2 the talin ferm domain 94 c3p04B_ not modelled 14.1 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 95 d1jb0j_ not modelled 13.9 50 Fold:Single transmembrane helix Superfamily:Subunit IX of photosystem I reaction centre, PsaJ Family:Subunit IX of photosystem I reaction centre, PsaJ 96 c2kn9A_ not modelled 13.9 18 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a 97 d1umua_ not modelled 13.8 14 Fold:LexA/Signal peptidase Superfamily:LexA/Signal peptidase Family:LexA-related 98 d1a8ra_ not modelled 13.8 12 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 99 c1x65A_ not modelled 13.7 9 PDB header:rna binding protein Chain: A: PDB Molecule:unr protein; PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein)