PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1smyd_

Fold library id	Fold	Superfamily	Family
d1smyd_	beta and beta-prime subunits of DNA dependent RNA-polymerase	beta and beta-prime subunits of DNA dependent RNA-polymerase	RNA-polymerase beta-prime

Links to external resources
Added to library: Tue Mar 16 13:57:59 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K K E V R K V R I A L A S P E K I R S W S Y G E V E K P E T I N Y R T L K P E R D G L F D E R I F G P I K D Y E C A C G K Y K R Q R F E G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B
T T S S S B
S S S S S
S S S S S
S S
S
S S S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V C E R C G V E V T K S I V R R Y R M G H I E L A T P A A H I W F V K D V P S K I G T L L D L S A T E L E Q V L Y F S K Y I V L D P K G A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S T
G G G T S S S S
T T S
T T T S
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L N G V P V E K R Q L L T D E E Y R E L R Y G K Q E T Y P L P P G V D A L V K D G E E V V K G Q E L A P G V V S R L D G V A L Y R F P R R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
T T
B
T
S
S T T T T G G G T B S
T T
S S S
S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R V E Y V K K E R A G L R L P L A A W V E K E A Y K P G E I L A E L P E P Y L F G D K I V A A I D P E E E V I A E A E G V V H L H E P A S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T T T T T T G G G T S S S
T T T T S T T T T
S S
S S
B T T B
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L V V K A R V Y P F E D D V E V S T G D R V A P G D V L A D G G K V K S D V Y G R V E V D L V R N V V R V V E S Y D I D A R M G A E A I Q Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T S S
S
S S S
S
S S
S S
T T T T
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence L L K E L D L E A L E K E L L E E M K H P S R A R R A K A R K R L E V V R A F L D S G N R P E W M I L E A V P V L P P D L R P M V Q V D G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
T T S
G G G G
S T T S
S T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence R F A T S D L N D L Y R R L I N R N N R L K K L L A Q G A P E I I I R N E K R M L Q E A V D A L L D N G R R G A P V T N P G S D R P L R S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S S
B
S T T
B

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence T D I L S G K Q G R F R Q N L L G K R V D Y S G R S V I V V G P Q L K L H Q C G L P K R M A L E L F K P F L L K K M E E K G I A P N V K A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T
S S
T T
T T B
B T S T T
S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence R R M L E R Q R D I K D E V W D A L E E V I H G K V V L L N R A P T L H R L G I Q A F Q P V L V E G Q S I Q L H P L V C E A F N A D F D G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G
T S S
S S
S G G G
B S S S S
S G G G T T T T
S S S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence Q M A V H V P L S S F A Q A E A R I Q M L S A H N L L S P A S G E P L A K P S R D I I L G L Y Y I T Q V R K E K K G A G L E F A T P E E A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S B S T T
B
S S S S S B S S
S S
S
T T S
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence A A H E R G E V A L N A P I K V A G R E T S V G R L K Y V F A N P D E A L L A V A H G I V D L Q D V V T V R Y M G K R L E T S P G R I L F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S S
S S
S S T T S S
T T S
T T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence R I V A E A V E D E K V A W E L I Q L D V P Q E K N S L K D L V Y Q A F L R L G M E K T A R L L D A L K Y Y G F T F S T T S G I T I G I D D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
T T S
T
T
G G G

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence A V I P E E K K Q Y L E E A D R K L L Q I E Q A Y E M G F L T D R E R Y D Q I L Q L W T E T T E K V T Q A V F K N F E E N Y P F N P L Y V M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S
T
T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence A Q S G A R G N P Q Q I R Q L C G L R G L M Q K P S G E T F E V P V R S S F R E G L T V L E Y F I S S H G A R K G G A D T A L R T A D S G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
T T
B
S S S
B
S S
S S S
S
S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence L T R K L V D V T H E I V V R E A D C G T T N Y I S V P L F Q P D E V T R S L R L R K R A D I E A G L Y G R V L A R E V E V L G V R L E E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
B
S
S
T T S S S
T T
B B S S
S S
T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence R Y L S M D D V H L L I K A A E A G E I Q E V P V R S P L T C Q T R Y G V C Q K C Y G Y D L S M A R P V S I G E A V G I V A A Q S I G E P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S
S
G G G
S S T T B
S
S S S S S
S S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence T Q L T M R T F H T G G V A G A A D I T Q G L P R V I E L F E A R R P K A K A V I S E I D G V V R I E E T E E K L S V F V E S E G F S K E Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S
T T
S
S S T T
T T
T T B
B
S S
S S
S S

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence K L P K E A R L L V K D G D Y V E A G Q P L T R G A I D P H Q L L E A K G P E A V E R Y L V E E I Q K V Y R A Q G V K L H D K H I E I V V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T
B
S S S B
T T T

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence Q M M K Y V E V T D P G D S R L L E G Q V L E K W D V E A L N E R L I A E G K T P V A W K P L L M G V T K S A L S T K S W L S A A S F Q N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S S S
S S
T S
S
T
S
T T S T T

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 . . . . . . . . . 1390 . .

Sequence T H V L T E A A I A G K K D E L I G L K E N V I L G R L I P A G T G S D F V R F T Q V V D Q K T L K A I E E A R K E A V E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T
S S S T T
T T T S S
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	K	E	V	R	K	V	R	I	A	L	A	S	P	E	K	I	R	S	W	S	Y	G	E	V	E	K	P	E	T	I	N	Y	R	T	L	K	P	E	R	D	G	L	F	D	E	R	I	F	G	P	I	K	D	Y	E	C	A	C	G	K	Y	K	R	Q	R	F	E	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											S				B		T	T	S	S	S	B		S	S	S	S	S								S	S	S	S	S		S	S		S			S	S	S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	C	E	R	C	G	V	E	V	T	K	S	I	V	R	R	Y	R	M	G	H	I	E	L	A	T	P	A	A	H	I	W	F	V	K	D	V	P	S	K	I	G	T	L	L	D	L	S	A	T	E	L	E	Q	V	L	Y	F	S	K	Y	I	V	L	D	P	K	G	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S					S	S	T																			G	G	G	T	S	S	S	S							T	T	S		T	T								T	S							S				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	N	G	V	P	V	E	K	R	Q	L	L	T	D	E	E	Y	R	E	L	R	Y	G	K	Q	E	T	Y	P	L	P	P	G	V	D	A	L	V	K	D	G	E	E	V	V	K	G	Q	E	L	A	P	G	V	V	S	R	L	D	G	V	A	L	Y	R	F	P	R	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S	S			T	T		B											T		S								S	T	T	T						T	G	G	G	T	B	S					T	T					S	S	S						S		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	V	E	Y	V	K	K	E	R	A	G	L	R	L	P	L	A	A	W	V	E	K	E	A	Y	K	P	G	E	I	L	A	E	L	P	E	P	Y	L	F	G	D	K	I	V	A	A	I	D	P	E	E	E	V	I	A	E	A	E	G	V	V	H	L	H	E	P	A	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S				S			T	T	T	T	T	T	T	G	G	G	T	S	S	S		T	T	T	T	S	T	T	T	T								S	S				S	S			B	T	T	B		S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	V	V	K	A	R	V	Y	P	F	E	D	D	V	E	V	S	T	G	D	R	V	A	P	G	D	V	L	A	D	G	G	K	V	K	S	D	V	Y	G	R	V	E	V	D	L	V	R	N	V	V	R	V	V	E	S	Y	D	I	D	A	R	M	G	A	E	A	I	Q	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S				S	S					T	T	S	S			S			S	S	S				S			S	S					S	S								T	T	T	T															S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	L	L	K	E	L	D	L	E	A	L	E	K	E	L	L	E	E	M	K	H	P	S	R	A	R	R	A	K	A	R	K	R	L	E	V	V	R	A	F	L	D	S	G	N	R	P	E	W	M	I	L	E	A	V	P	V	L	P	P	D	L	R	P	M	V	Q	V	D	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S																S	S																				T	T	S			G	G	G	G										S	T	T	S						S	T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	R	F	A	T	S	D	L	N	D	L	Y	R	R	L	I	N	R	N	N	R	L	K	K	L	L	A	Q	G	A	P	E	I	I	I	R	N	E	K	R	M	L	Q	E	A	V	D	A	L	L	D	N	G	R	R	G	A	P	V	T	N	P	G	S	D	R	P	L	R	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T																					T																								T	T	S	S				B		S	T	T				B
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	T	D	I	L	S	G	K	Q	G	R	F	R	Q	N	L	L	G	K	R	V	D	Y	S	G	R	S	V	I	V	V	G	P	Q	L	K	L	H	Q	C	G	L	P	K	R	M	A	L	E	L	F	K	P	F	L	L	K	K	M	E	E	K	G	I	A	P	N	V	K	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	T						T	T					S	S										T	T			T	T			B		B								T											S	T	T		S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	R	R	M	L	E	R	Q	R	D	I	K	D	E	V	W	D	A	L	E	E	V	I	H	G	K	V	V	L	L	N	R	A	P	T	L	H	R	L	G	I	Q	A	F	Q	P	V	L	V	E	G	Q	S	I	Q	L	H	P	L	V	C	E	A	F	N	A	D	F	D	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	G	G	G			T											S	S								S	S			S	G	G	G									B	S	S	S	S					S	G	G	G	T	T	T	T			S	S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	Q	M	A	V	H	V	P	L	S	S	F	A	Q	A	E	A	R	I	Q	M	L	S	A	H	N	L	L	S	P	A	S	G	E	P	L	A	K	P	S	R	D	I	I	L	G	L	Y	Y	I	T	Q	V	R	K	E	K	K	G	A	G	L	E	F	A	T	P	E	E	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S											S	B	S	T	T			B		S	S	S	S	S	B	S	S				S										S									S				T	T	S		S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	A	A	H	E	R	G	E	V	A	L	N	A	P	I	K	V	A	G	R	E	T	S	V	G	R	L	K	Y	V	F	A	N	P	D	E	A	L	L	A	V	A	H	G	I	V	D	L	Q	D	V	V	T	V	R	Y	M	G	K	R	L	E	T	S	P	G	R	I	L	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S	S		S	S				S	S											S	S										T	T	S	S		T	T	S							T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	R	I	V	A	E	A	V	E	D	E	K	V	A	W	E	L	I	Q	L	D	V	P	Q	E	K	N	S	L	K	D	L	V	Y	Q	A	F	L	R	L	G	M	E	K	T	A	R	L	L	D	A	L	K	Y	Y	G	F	T	F	S	T	T	S	G	I	T	I	G	I	D	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S								S			T	T	S																		T																								T					G	G	G
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	A	V	I	P	E	E	K	K	Q	Y	L	E	E	A	D	R	K	L	L	Q	I	E	Q	A	Y	E	M	G	F	L	T	D	R	E	R	Y	D	Q	I	L	Q	L	W	T	E	T	T	E	K	V	T	Q	A	V	F	K	N	F	E	E	N	Y	P	F	N	P	L	Y	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				T																							T		S																															T		T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	A	Q	S	G	A	R	G	N	P	Q	Q	I	R	Q	L	C	G	L	R	G	L	M	Q	K	P	S	G	E	T	F	E	V	P	V	R	S	S	F	R	E	G	L	T	V	L	E	Y	F	I	S	S	H	G	A	R	K	G	G	A	D	T	A	L	R	T	A	D	S	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S	S										T	T						B		S	S	S		B		S	S						S	S	S																										S		S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	L	T	R	K	L	V	D	V	T	H	E	I	V	V	R	E	A	D	C	G	T	T	N	Y	I	S	V	P	L	F	Q	P	D	E	V	T	R	S	L	R	L	R	K	R	A	D	I	E	A	G	L	Y	G	R	V	L	A	R	E	V	E	V	L	G	V	R	L	E	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	T		B				S			S													T	T	S	S	S															T	T		B	B	S	S					S	S					T	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	R	Y	L	S	M	D	D	V	H	L	L	I	K	A	A	E	A	G	E	I	Q	E	V	P	V	R	S	P	L	T	C	Q	T	R	Y	G	V	C	Q	K	C	Y	G	Y	D	L	S	M	A	R	P	V	S	I	G	E	A	V	G	I	V	A	A	Q	S	I	G	E	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B																S	S		S							G	G	G		S	S	T	T	B								S		S	S	S	S	S				S	S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	T	Q	L	T	M	R	T	F	H	T	G	G	V	A	G	A	A	D	I	T	Q	G	L	P	R	V	I	E	L	F	E	A	R	R	P	K	A	K	A	V	I	S	E	I	D	G	V	V	R	I	E	E	T	E	E	K	L	S	V	F	V	E	S	E	G	F	S	K	E	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S			S		T	T		S		S	S	T	T															T	T				T	T	B			B		S	S										S	S									S	S
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	K	L	P	K	E	A	R	L	L	V	K	D	G	D	Y	V	E	A	G	Q	P	L	T	R	G	A	I	D	P	H	Q	L	L	E	A	K	G	P	E	A	V	E	R	Y	L	V	E	E	I	Q	K	V	Y	R	A	Q	G	V	K	L	H	D	K	H	I	E	I	V	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T							T	T					T	T		B		S	S	S	B																													T	T	T
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	Q	M	M	K	Y	V	E	V	T	D	P	G	D	S	R	L	L	E	G	Q	V	L	E	K	W	D	V	E	A	L	N	E	R	L	I	A	E	G	K	T	P	V	A	W	K	P	L	L	M	G	V	T	K	S	A	L	S	T	K	S	W	L	S	A	A	S	F	Q	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T						S	S		S	S	S		S	S																		T	S		S																			T		S						T	T	S	T	T
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.
Sequence	T	H	V	L	T	E	A	A	I	A	G	K	K	D	E	L	I	G	L	K	E	N	V	I	L	G	R	L	I	P	A	G	T	G	S	D	F	V	R	F	T	Q	V	V	D	Q	K	T	L	K	A	I	E	E	A	R	K	E	A	V	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T							S							T	T				S	S	S	T	T		T	T	T	S	S																		T	T	S