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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3iydD_

Fold library idPDB HeaderMoleculeTitle
c3iydD_PDB header: transcription/dnaChain: D: PDB Molecule: dna-directed rna polymerase subunit beta;PDBTitle: three-dimensional em structure of an intact activator-2 dependent transcription initiation complex


Added to library: Sun Aug 29 00:23:58 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVI
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Known secondary structure (DSSP)




B








B





B
SSS

B
TTSTT


SBTTB
SSSS

STT
SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNL
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Known secondary structure (DSSP)
SSS





SSTTSS


B


SS

B
STTTSSSS
SSSGGGT

SSSSTTTTTSS


SS
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLL
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Known secondary structure (DSSP)
SS

GGGTTTSSSSS







STTSST

T
SSSS
TTTTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN
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Known secondary structure (DSSP) TT

STTSB
SS




TTTS




SSS




GGGTGGGTTTTTTTS
STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH
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Known secondary structure (DSSP)
TTSSS

B
SSS
SB


STTTTTTTT






SS
TT

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGI
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Known secondary structure (DSSP)
TTTSSS
S
TTSSSSTT


SGGGTSSSS


SS
SSSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ
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Known secondary structure (DSSP)
SSS
STTT

TTT




STTTTSBSTT

B
SSSSSBS



S
 .........500.........510.........520.........530.........540.........550.........560
Sequence DVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV
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Known secondary structure (DSSP) S












SS


TT


SS
TSB
SSSSTT
SSS


SSS
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM
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Known secondary structure (DSSP) TSSSSTTSSTTTS




SS


TTTTTSS
SSTTSSTTSS





TTSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEE
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Known secondary structure (DSSP)


TTTTTTSTSS
TTTTTTTSTTTTTTTT







S
 .........710.........720.........730.........740.........750.........760.........770
Sequence KQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
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Known secondary structure (DSSP)
SS

SSTTTTSS

S






SSS


SS




TTT


TTTGGGSGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA
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Known secondary structure (DSSP) SSTTGGGSTTTGGG




S




SSSSB


S

TTTT


SS

B
S



SSSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG
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Known secondary structure (DSSP) S
S

TT



T
S


B

STT

SSS


STTT
B
SSSSSB

TT

TTTTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence EPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKES
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Known secondary structure (DSSP) SGGGG




S
SS









SS

SS





TTSS




S



B
TTS
B


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence YKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS
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Known secondary structure (DSSP)



SS

BSS
TT

SS

TT

SS
S

BTTT


SSS





S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDI
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Known secondary structure (DSSP) SSS
SSSSSS


SSS
B
B
TTT

B


SS


SS

TT










 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
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Known secondary structure (DSSP)

SSTTTTT


SS




SS

B





SSS

SSSS

B
SS







S






SS


 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDF
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Known secondary structure (DSSP)
TTS

SSS


TTTT
STTS



GGGTTTTSGGGGS


B


TTS
S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDEL
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Known secondary structure (DSSP) S



S

TTTTTTTTTTSS

S



B





TTS
S
SSS

TTT

B
S
 .........1340.........1350.........1360........
Sequence RGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP
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Known secondary structure (DSSP)
SSTT



SSTTS
TTTTT

S
GGGTTSTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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