Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP24174
DateThu Jan 5 11:40:50 GMT 2012
Unique Job ID65a060d37397fe78

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2x5sB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase;
PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.
Confidence and coverage
Confidence:100.0% Coverage: 69%
329 residues ( 69% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
452 residues ( 95%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVIC
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Disorder  ??????





















































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   .........70.........80.........90.........100.........110.........120
Sequence  NEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADH
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   .........130.........140.........150.........160.........170.........180
Sequence  VIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDMVAFEVAQ
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?????????
?




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   .........190.........200.........210.........220.........230.........240
Sequence  FVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLN
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?
?



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   .........250.........260.........270.........280.........290.........300
Sequence  FIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEISAHTAEGNVCH
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?




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   .........310.........320.........330.........340.........350.........360
Sequence  GDVINHKTENSYVYAESGLVTTVGVKDLVVVQTKDAVLIADRNAVQDVKKVVEQIKADGR
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???
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   .........370.........380.........390.........400.........410.........420
Sequence  HEHRVHREVYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVT
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Disorder  ??

























































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   .........430.........440.........450.........460.........470........
Sequence  IDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEEDDVVRFADRYGRV
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???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2x5s chain B

3D model

Region: 6 - 355
Aligned: 329
Modelled: 348
Confidence: 100.0%
Identity: 40%
PDB header:transferase
Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase;
PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.

Phyre2

PDB 2cu2 chain A

3D model

Region: 4 - 357
Aligned: 332
Modelled: 354
Confidence: 100.0%
Identity: 36%
PDB header:transferase
Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase;
PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8

Phyre2

PDB 2qh5 chain B

3D model

Region: 5 - 279
Aligned: 251
Modelled: 275
Confidence: 100.0%
Identity: 36%
PDB header:isomerase
Chain: B: PDB Molecule:mannose-6-phosphate isomerase;
PDBTitle: crystal structure of mannose-6-phosphate isomerase from helicobacter2 pylori

Phyre2

PDB 2cu2 chain A domain 2

3D model

Region: 5 - 292
Aligned: 266
Modelled: 288
Confidence: 100.0%
Identity: 38%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: mannose-1-phosphate guanylyl transferase

Phyre2

PDB 2pa4 chain B

3D model

Region: 4 - 290
Aligned: 244
Modelled: 271
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose

Phyre2

PDB 1mc3 chain A

3D model

Region: 6 - 291
Aligned: 233
Modelled: 254
Confidence: 100.0%
Identity: 18%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2

PDB 1h5r chain A

3D model

Region: 7 - 289
Aligned: 229
Modelled: 267
Confidence: 100.0%
Identity: 18%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2

PDB 1fxo chain A

3D model

Region: 5 - 289
Aligned: 232
Modelled: 269
Confidence: 100.0%
Identity: 19%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2

PDB 1lvw chain A

3D model

Region: 4 - 289
Aligned: 233
Modelled: 265
Confidence: 100.0%
Identity: 18%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2

PDB 2e3d chain B

3D model

Region: 7 - 289
Aligned: 232
Modelled: 248
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase

Phyre2

PDB 1iin chain A

3D model

Region: 1 - 289
Aligned: 233
Modelled: 263
Confidence: 100.0%
Identity: 19%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2

PDB 2ux8 chain G

3D model

Region: 1 - 290
Aligned: 242
Modelled: 266
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate.

Phyre2

PDB 1yp3 chain C

3D model

Region: 5 - 292
Aligned: 238
Modelled: 256
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small
PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp

Phyre2

PDB 1yp2 chain A domain 2

3D model

Region: 8 - 318
Aligned: 262
Modelled: 283
Confidence: 100.0%
Identity: 16%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2

PDB 1hm8 chain A

3D model

Region: 7 - 287
Aligned: 228
Modelled: 265
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase;
PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a

Phyre2

PDB 3brk chain X

3D model

Region: 1 - 289
Aligned: 246
Modelled: 248
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase;
PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens

Phyre2

PDB 3d98 chain A

3D model

Region: 1 - 289
Aligned: 240
Modelled: 273
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form

Phyre2

PDB 3pnn chain A

3D model

Region: 4 - 289
Aligned: 253
Modelled: 269
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83

Phyre2

PDB 3juk chain A

3D model

Region: 6 - 289
Aligned: 238
Modelled: 267
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:udp-glucose pyrophosphorylase (galu);
PDBTitle: the crystal structure of udp-glucose pyrophosphorylase complexed with2 udp-glucose

Phyre2

PDB 2qkx chain A

3D model

Region: 1 - 287
Aligned: 238
Modelled: 272
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate

Phyre2

PDB 2fqp chain D

3D model

Region: 371 - 459
Aligned: 89
Modelled: 87
Confidence: 99.7%
Identity: 19%
PDB header:metal binding protein
Chain: D: PDB Molecule:hypothetical protein bp2299;
PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution

Phyre2

PDB 2gu9 chain B

3D model

Region: 375 - 466
Aligned: 92
Modelled: 92
Confidence: 99.7%
Identity: 22%
PDB header:immune system
Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein;
PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure

Phyre2

PDB 3i7d chain B

3D model

Region: 382 - 474
Aligned: 93
Modelled: 86
Confidence: 99.7%
Identity: 19%
PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase;
PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution

Phyre2

PDB 2oa2 chain A

3D model

Region: 375 - 470
Aligned: 95
Modelled: 93
Confidence: 99.7%
Identity: 24%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2720 protein;
PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution

Phyre2

PDB 3h8u chain A

3D model

Region: 377 - 464
Aligned: 88
Modelled: 87
Confidence: 99.6%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded
PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution

Phyre2

PDB 3cew chain A

3D model

Region: 382 - 471
Aligned: 90
Modelled: 89
Confidence: 99.6%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized cupin protein;
PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205

Phyre2
1

c2x5sB_
2

c2cu2A_
3

c2qh5B_
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d2cu2a2
5

c2pa4B_
6

d1mc3a_
7

d1h5ra_
8

d1fxoa_
9

d1lvwa_
10

c2e3dB_
11

d1iina_
12

c2ux8G_
13

c1yp3C_
14

d1yp2a2
15

c1hm8A_
16

c3brkX_
17

c3d98A_
18

c3pnnA_
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c3jukA_
20

c2qkxA_
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c2fqpD_
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c2gu9B_
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c3i7dB_
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c2oa2A_
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c3h8uA_
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c3cewA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2x5sB_



100.0 40 PDB header:transferase
Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase;
PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.
2c2cu2A_



100.0 36 PDB header:transferase
Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase;
PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8
3c2qh5B_



100.0 36 PDB header:isomerase
Chain: B: PDB Molecule:mannose-6-phosphate isomerase;
PDBTitle: crystal structure of mannose-6-phosphate isomerase from helicobacter2 pylori
4d2cu2a2



100.0 38 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:mannose-1-phosphate guanylyl transferase
5c2pa4B_



100.0 16 PDB header:transferase
Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose
6d1mc3a_



100.0 18 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
7d1h5ra_



100.0 18 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
8d1fxoa_



100.0 19 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
9d1lvwa_



100.0 18 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
10c2e3dB_



100.0 16 PDB header:transferase
Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase
11d1iina_



100.0 19 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
12c2ux8G_



100.0 17 PDB header:transferase
Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate.
13c1yp3C_



100.0 18 PDB header:transferase
Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small
PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp
14d1yp2a2



100.0 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
15c1hm8A_



100.0 19 PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase;
PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a
16c3brkX_



100.0 18 PDB header:transferase
Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase;
PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens
17c3d98A_



100.0 17 PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form
18c3pnnA_



100.0 16 PDB header:transferase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83
19c3jukA_



100.0 20 PDB header:transferase
Chain: A: PDB Molecule:udp-glucose pyrophosphorylase (galu);
PDBTitle: the crystal structure of udp-glucose pyrophosphorylase complexed with2 udp-glucose
20c2qkxA_



100.0 18 PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate
21c2v0hA_



not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu)
22c1fwyA_



not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase;
PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac
23c3hl3A_



not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase;
PDBTitle: 2.76 angstrom crystal structure of a putative glucose-1-phosphate2 thymidylyltransferase from bacillus anthracis in complex with a3 sucrose.
24c2oi6A_



not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4
25d1g97a2



not modelled 100.0 19 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
26d2oi6a2



not modelled 100.0 20 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
27c2ggqA_



not modelled 99.9 17 PDB header:transferase
Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate
PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii
28d1tzfa_



not modelled 99.9 18 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
29d1jyka_



not modelled 99.9 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
30c1jylC_



not modelled 99.9 15 PDB header:transferase
Chain: C: PDB Molecule:ctp:phosphocholine cytidylytransferase;
PDBTitle: catalytic mechanism of ctp:phosphocholine2 cytidylytransferase from streptococcus pneumoniae (licc)
31d1vica_



not modelled 99.9 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
32c3oamD_



not modelled 99.8 14 PDB header:transferase
Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase;
PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae
33c2xmhB_



not modelled 99.8 13 PDB header:transferase
Chain: B: PDB Molecule:ctp-inositol-1-phosphate cytidylyltransferase;
PDBTitle: the x-ray structure of ctp:inositol-1-phosphate2 cytidylyltransferase from archaeoglobus fulgidus
34c2xwlB_



not modelled 99.8 21 PDB header:transferase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase;
PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg
35c3polA_



not modelled 99.8 14 PDB header:transferase
Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase;
PDBTitle: 2.3 angstrom crystal structure of 3-deoxy-manno-octulosonate2 cytidylyltransferase (kdsb) from acinetobacter baumannii.
36d1vpaa_



not modelled 99.8 21 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
37d1h7ea_



not modelled 99.8 20 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
38d2cu2a1



not modelled 99.8 34 Fold:Single-stranded left-handed beta-helix
Superfamily:Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
Family:Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
39d1eyra_



not modelled 99.7 14 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
40d1i52a_



not modelled 99.7 17 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
41c2y6pC_



not modelled 99.7 16 PDB header:transferase
Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase;
PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb
42c3tqdA_



not modelled 99.7 17 PDB header:transferase
Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase;
PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii
43c2fqpD_



99.7 19 PDB header:metal binding protein
Chain: D: PDB Molecule:hypothetical protein bp2299;
PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution
44d1w55a1



not modelled 99.7 15 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
45d1vh1a_



not modelled 99.7 14 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
46c2gu9B_



99.7 22 PDB header:immune system
Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein;
PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure
47c3i7dB_



99.7 19 PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase;
PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution
48c2oa2A_



99.7 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2720 protein;
PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution
49c3f1cB_



not modelled 99.6 13 PDB header:transferase
Chain: B: PDB Molecule:putative 2-c-methyl-d-erythritol 4-phosphate
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from listeria monocytogenes
50c2wawA_



not modelled 99.6 21 PDB header:unknown function
Chain: A: PDB Molecule:moba relate protein;
PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1
51d1qwja_



not modelled 99.6 14 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
52d1w77a1



not modelled 99.6 14 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
53d1vh3a_



not modelled 99.6 13 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
54c3h8uA_



99.6 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded
PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution
55c3cewA_



99.6 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized cupin protein;
PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205
56c3d82A_



not modelled 99.6 20 PDB header:metal binding protein
Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution
57c2we9A_



not modelled 99.6 16 PDB header:unknown function
Chain: A: PDB Molecule:moba-related protein;
PDBTitle: crystal structure of rv0371c from mycobacterium2 tuberculosis h37rv
58d2dpwa1



not modelled 99.6 17 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:TTHA0179-like
59c2o8qA_



not modelled 99.6 19 PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution
60c3jzvA_



not modelled 99.5 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rru_a2000;
PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain.
61d1vgwa_



not modelled 99.5 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
62c3l2hD_



not modelled 99.5 21 PDB header:isomerase
Chain: D: PDB Molecule:putative sugar phosphate isomerase;
PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution
63d1e5ka_



not modelled 99.5 18 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Molybdenum cofactor biosynthesis protein MobA
64d1v70a_



not modelled 99.5 19 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
65d1x82a_



not modelled 99.5 19 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Glucose-6-phosphate isomerase, GPI
66d2b8ma1



not modelled 99.5 14 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:MJ0764-like
67c2oziA_



not modelled 99.5 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa4178;
PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009
68c3rsbB_



not modelled 99.5 16 PDB header:transferase
Chain: B: PDB Molecule:adenosylcobinamide-phosphate guanylyltransferase;
PDBTitle: structure of the archaeal gtp:adocbi-p guanylyltransferase (coby) from2 methanocaldococcus jannaschii
69c3ibmB_



not modelled 99.4 28 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila
70c2e8bA_



not modelled 99.4 16 PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of the putative protein (aq1419) from aquifex2 aeolicus vf5
71c2vshB_



not modelled 99.4 17 PDB header:transferase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate
PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae
72c3kgzA_



not modelled 99.4 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris
73c2vpvA_



not modelled 99.4 13 PDB header:cell cycle
Chain: A: PDB Molecule:protein mif2;
PDBTitle: dimerization domain of mif2p
74c3okrA_



not modelled 99.4 18 PDB header:transferase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase;
PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd)
75c1w57A_



not modelled 99.4 13 PDB header:transferase
Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme;
PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn
76d1lr5a_



not modelled 99.4 18 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
77d1o4ta_



not modelled 99.4 18 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
78d1j3pa_



not modelled 99.4 16 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Glucose-6-phosphate isomerase, GPI
79c2i45C_



not modelled 99.4 19 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis
80c3ngwA_



not modelled 99.4 17 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis protein a
PDBTitle: crystal structure of molybdopterin-guanine dinucleotide biosynthesis2 protein a from archaeoglobus fulgidus, northeast structural genomics3 consortium target gr189
81d1y9qa2



not modelled 99.4 18 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Probable transcriptional regulator VC1968, C-terminal domain
82c2px7A_



not modelled 99.3 19 PDB header:transferase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from thermus thermophilus hb8
83d1vj2a_



not modelled 99.3 15 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1459-like
84d1rc6a_



not modelled 99.3 17 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
85c3fjsC_



not modelled 99.2 16 PDB header:biosynthetic protein
Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold;
PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution
86c3ht2A_



not modelled 99.2 20 PDB header:lyase
Chain: A: PDB Molecule:remf protein;
PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus
87c2ozjB_



not modelled 99.2 19 PDB header:unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel;
PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution
88c1sefA_



not modelled 99.2 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis
89d1sefa_



not modelled 99.2 13 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
90d1sfna_



not modelled 99.2 11 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
91c3rnsA_



not modelled 99.2 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis
92c2pfwB_



not modelled 99.2 26 PDB header:unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution
93d2f4pa1



not modelled 99.2 17 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
94c2q30C_



not modelled 99.1 15 PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution
95d1sq4a_



not modelled 99.1 13 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
96d1yhfa1



not modelled 99.1 17 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
97d1y3ta1



not modelled 99.1 20 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Quercetin 2,3-dioxygenase-like
98c2vqaC_



not modelled 99.1 24 PDB header:metal-binding protein
Chain: C: PDB Molecule:sll1358 protein;
PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca.
99d2icya2



not modelled 99.0 13 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
100c3lwcA_



not modelled 99.0 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution
101c3h7yA_



not modelled 99.0 16 PDB header:biosynthetic protein
Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb;
PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form
102c3okrC_



not modelled 99.0 17 PDB header:transferase
Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase;
PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd)
103d1j58a_



not modelled 98.9 25 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
104c2y0oA_



not modelled 98.9 23 PDB header:isomerase
Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase;
PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis
105c2d40C_



not modelled 98.8 24 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase;
PDBTitle: crystal structure of z3393 from escherichia coli o157:h7
106c3d5nB_



not modelled 98.8 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:q97w15_sulso;
PDBTitle: crystal structure of the q97w15_sulso protein from2 sulfolobus solfataricus. nesg target ssr125.
107d2et1a1



not modelled 98.8 25 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
108d1vm8a_



not modelled 98.8 20 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
109c2i5kB_



not modelled 98.8 10 PDB header:transferase
Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of ugp1p
110d2d40a1



not modelled 98.8 27 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Gentisate 1,2-dioxygenase-like
111d1dgwa_



not modelled 98.8 24 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
112c2zklA_



not modelled 98.7 27 PDB header:isomerase
Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f;
PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus
113c2q4jB_



not modelled 98.7 13 PDB header:transferase
Chain: B: PDB Molecule:probable utp-glucose-1-phosphate uridylyltransferase 2;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at3g03250, a putative udp-glucose3 pyrophosphorylase
114d1uika1



not modelled 98.7 27 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
115d1juha_



not modelled 98.7 14 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Quercetin 2,3-dioxygenase-like
116d2phda1



not modelled 98.7 14 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Gentisate 1,2-dioxygenase-like
117d1fxza1



not modelled 98.6 13 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
118c3ogzA_



not modelled 98.6 19 PDB header:transferase
Chain: A: PDB Molecule:udp-sugar pyrophosphorylase;
PDBTitle: protein structure of usp from l. major in apo-form
119c3mpbA_



not modelled 98.6 25 PDB header:isomerase
Chain: A: PDB Molecule:sugar isomerase;
PDBTitle: z5688 from e. coli o157:h7 bound to fructose
120c3gueB_



not modelled 98.6 13 PDB header:transferase
Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2;
PDBTitle: crystal structure of udp-glucose phosphorylase from trypanosoma2 brucei, (tb10.389.0330)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0