Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP08722
DateThu Jan 5 11:01:37 GMT 2012
Unique Job ID6526919da970ee01

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2f3ga_
Top template information
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
Confidence and coverage
Confidence:100.0% Coverage: 24%
149 residues ( 24% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
617 residues ( 99%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQ
Secondary structure 
SS confidence 
Disorder  ??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  VVIGNHVADVFLAVNSVAGLDEKAQQAPENDDKGNLLNRFVYVISGIFTPLIGLMAATGI
Secondary structure 
SS confidence 
Disorder 
???????????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LKGMLALALTFQWTTEQSGTYLILFSASDALFWFFPIILGYTAGKRFGGNPFTAMVIGGA
Secondary structure 
SS confidence 
Disorder 
????
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LVHPLILTAFENGQKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLNAWLPS
Secondary structure 
SS confidence 
Disorder 
????????
???????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  AIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIF
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  VMFGLHWGLVPLCINNFTVLGYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAA
Secondary structure 
SS confidence 
Disorder 
?
????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LTSLFGITEPAVYGVNLPRKYPFVIACISGALGATIIGYAQTKVYSFGLPSIFTFMQTIP
Secondary structure 
SS confidence 
Disorder 
??
?
?
?
???
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  STGIDFTVWASVIGGVIAIGCAFVGTVMLHFITAKRQPAQGAPQEKTPEVITPPEQGGIC
Secondary structure 
SS confidence 
Disorder 
??????????????????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  SPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDD
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  GVEILIHVGIDTVKLDGKFFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........610.........620.....
Sequence  DDFTDVLPHGTAQISAGEPLLSIIR
Secondary structure 
SS confidence 
Disorder 
?
????????
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2f3g chain A

3D model

Region: 476 - 625
Aligned: 149
Modelled: 150
Confidence: 100.0%
Identity: 40%
Fold: Barrel-sandwich hybrid
Superfamily: Duplicated hybrid motif
Family: Glucose permease-like

Phyre2

PDB 1gla chain F

3D model

Region: 471 - 625
Aligned: 154
Modelled: 155
Confidence: 100.0%
Identity: 39%
Fold: Barrel-sandwich hybrid
Superfamily: Duplicated hybrid motif
Family: Glucose permease-like

Phyre2

PDB 2gpr chain A

3D model

Region: 474 - 624
Aligned: 150
Modelled: 151
Confidence: 100.0%
Identity: 31%
Fold: Barrel-sandwich hybrid
Superfamily: Duplicated hybrid motif
Family: Glucose permease-like

Phyre2

PDB 1gpr chain A

3D model

Region: 468 - 625
Aligned: 158
Modelled: 158
Confidence: 100.0%
Identity: 38%
Fold: Barrel-sandwich hybrid
Superfamily: Duplicated hybrid motif
Family: Glucose permease-like

Phyre2

PDB 3qnq chain D

3D model

Region: 98 - 469
Aligned: 372
Modelled: 372
Confidence: 100.0%
Identity: 15%
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system

Phyre2

PDB 3ipj chain B

3D model

Region: 2 - 90
Aligned: 88
Modelled: 89
Confidence: 99.9%
Identity: 27%
PDB header:transferase
Chain: B: PDB Molecule:pts system, iiabc component;
PDBTitle: the crystal structure of one domain of the pts system, iiabc component2 from clostridium difficile

Phyre2

PDB 1iba chain A

3D model

Region: 4 - 77
Aligned: 73
Modelled: 74
Confidence: 99.9%
Identity: 34%
PDB header:phoshphotransferase
Chain: A: PDB Molecule:glucose permease;
PDBTitle: glucose permease (domain iib), nmr, 11 structures

Phyre2

PDB 3bp8 chain C domain 1

3D model

Region: 4 - 78
Aligned: 74
Modelled: 75
Confidence: 99.9%
Identity: 34%
Fold: Homing endonuclease-like
Superfamily: Glucose permease domain IIB
Family: Glucose permease domain IIB

Phyre2

PDB 1dcz chain A

3D model

Region: 510 - 623
Aligned: 72
Modelled: 79
Confidence: 97.5%
Identity: 25%
Fold: Barrel-sandwich hybrid
Superfamily: Single hybrid motif
Family: Biotinyl/lipoyl-carrier proteins and domains

Phyre2

PDB 3n6r chain K

3D model

Region: 512 - 624
Aligned: 71
Modelled: 78
Confidence: 97.2%
Identity: 18%
PDB header:ligase
Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit;
PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc)

Phyre2

PDB 2b44 chain A

3D model

Region: 505 - 579
Aligned: 66
Modelled: 75
Confidence: 97.2%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:glycyl-glycine endopeptidase lytm;
PDBTitle: truncated s. aureus lytm, p 32 2 1 crystal form

Phyre2

PDB 1qwy chain A

3D model

Region: 461 - 579
Aligned: 104
Modelled: 119
Confidence: 97.1%
Identity: 13%
Fold: Barrel-sandwich hybrid
Superfamily: Duplicated hybrid motif
Family: Peptidoglycan hydrolase LytM

Phyre2

PDB 1o78 chain A

3D model

Region: 510 - 623
Aligned: 72
Modelled: 79
Confidence: 97.0%
Identity: 25%
Fold: Barrel-sandwich hybrid
Superfamily: Single hybrid motif
Family: Biotinyl/lipoyl-carrier proteins and domains

Phyre2

PDB 1bdo chain A

3D model

Region: 512 - 623
Aligned: 77
Modelled: 84
Confidence: 97.0%
Identity: 27%
Fold: Barrel-sandwich hybrid
Superfamily: Single hybrid motif
Family: Biotinyl/lipoyl-carrier proteins and domains

Phyre2

PDB 2gu1 chain A

3D model

Region: 452 - 579
Aligned: 121
Modelled: 128
Confidence: 96.8%
Identity: 11%
PDB header:hydrolase
Chain: A: PDB Molecule:zinc peptidase;
PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae

Phyre2

PDB 2qf7 chain A

3D model

Region: 456 - 579
Aligned: 80
Modelled: 89
Confidence: 96.6%
Identity: 29%
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase protein;
PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli

Phyre2

PDB 2ejg chain D

3D model

Region: 552 - 623
Aligned: 65
Modelled: 72
Confidence: 96.5%
Identity: 20%
PDB header:ligase
Chain: D: PDB Molecule:149aa long hypothetical methylmalonyl-coa decarboxylase
PDBTitle: crystal structure of the biotin protein ligase (mutation r48a) and2 biotin carboxyl carrier protein complex from pyrococcus horikoshii3 ot3

Phyre2

PDB 2ejm chain A

3D model

Region: 547 - 623
Aligned: 70
Modelled: 77
Confidence: 96.4%
Identity: 21%
PDB header:ligase
Chain: A: PDB Molecule:methylcrotonoyl-coa carboxylase subunit alpha;
PDBTitle: solution structure of ruh-072, an apo-biotnyl domain form2 human acetyl coenzyme a carboxylase

Phyre2

PDB 1vf7 chain A

3D model

Region: 509 - 587
Aligned: 44
Modelled: 44
Confidence: 96.1%
Identity: 34%
Fold: HlyD-like secretion proteins
Superfamily: HlyD-like secretion proteins
Family: HlyD-like secretion proteins

Phyre2

PDB 2dn8 chain A

3D model

Region: 510 - 623
Aligned: 71
Modelled: 79
Confidence: 96.0%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: solution structure of rsgi ruh-053, an apo-biotin carboxy2 carrier protein from human transcarboxylase

Phyre2
1
d2f3ga_
2
d1glaf_
3
d2gpra_
4
d1gpra_
5
c3qnqD_
6
c3ipjB_
7
c1ibaA_
8
d3bp8c1
9
d1dcza_
10
c3n6rK_
11
c2b44A_
12
d1qwya_
13
d1o78a_
14
d1bdoa_
15
c2gu1A_
16
c2qf7A_
17
c2ejgD_
18
c2ejmA_
19
d1vf7a_
20
c2dn8A_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2f3ga_
100.0 40 Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
2d1glaf_
100.0 39 Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
3d2gpra_
100.0 31 Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
4d1gpra_
100.0 38 Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
5c3qnqD_
100.0 15 PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
6c3ipjB_
99.9 27 PDB header:transferase
Chain: B: PDB Molecule:pts system, iiabc component;
PDBTitle: the crystal structure of one domain of the pts system, iiabc component2 from clostridium difficile
7c1ibaA_
99.9 34 PDB header:phoshphotransferase
Chain: A: PDB Molecule:glucose permease;
PDBTitle: glucose permease (domain iib), nmr, 11 structures
8d3bp8c1
99.9 34 Fold:Homing endonuclease-like
Superfamily:Glucose permease domain IIB
Family:Glucose permease domain IIB
9d1dcza_
97.5 25 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
10c3n6rK_
97.2 18 PDB header:ligase
Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit;
PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc)
11c2b44A_
97.2 18 PDB header:hydrolase
Chain: A: PDB Molecule:glycyl-glycine endopeptidase lytm;
PDBTitle: truncated s. aureus lytm, p 32 2 1 crystal form
12d1qwya_
97.1 13 Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Peptidoglycan hydrolase LytM
13d1o78a_
97.0 25 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
14d1bdoa_
97.0 27 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
15c2gu1A_
96.8 11 PDB header:hydrolase
Chain: A: PDB Molecule:zinc peptidase;
PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae
16c2qf7A_
96.6 29 PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase protein;
PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli
17c2ejgD_
96.5 20 PDB header:ligase
Chain: D: PDB Molecule:149aa long hypothetical methylmalonyl-coa decarboxylase
PDBTitle: crystal structure of the biotin protein ligase (mutation r48a) and2 biotin carboxyl carrier protein complex from pyrococcus horikoshii3 ot3
18c2ejmA_
96.4 21 PDB header:ligase
Chain: A: PDB Molecule:methylcrotonoyl-coa carboxylase subunit alpha;
PDBTitle: solution structure of ruh-072, an apo-biotnyl domain form2 human acetyl coenzyme a carboxylase
19d1vf7a_
96.1 34 Fold:HlyD-like secretion proteins
Superfamily:HlyD-like secretion proteins
Family:HlyD-like secretion proteins
20c2dn8A_
96.0 20 PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: solution structure of rsgi ruh-053, an apo-biotin carboxy2 carrier protein from human transcarboxylase
21c2hsiB_
not modelled 96.0 21 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative peptidase m23;
PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium
22c2b8gA_
not modelled 96.0 18 PDB header:biosynthetic protein
Chain: A: PDB Molecule:biotin/lipoyl attachment protein;
PDBTitle: solution structure of bacillus subtilis blap biotinylated-2 form (energy minimized mean structure)
23c3nyyA_
not modelled 95.8 20 PDB header:hydrolase
Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm;
PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution
24c2aukA_
not modelled 95.8 16 PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: structure of e. coli rna polymerase beta' g/g' insert
25d1ci3m2
not modelled 95.6 25 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
26d1iyua_
not modelled 95.3 16 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
27d1ghja_
not modelled 95.3 16 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
28c1q90A_
not modelled 95.2 19 PDB header:photosynthesis
Chain: A: PDB Molecule:apocytochrome f;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
29c1e2vB_
not modelled 95.1 19 PDB header:electron transport proteins
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii
30c2jxmB_
not modelled 94.9 26 PDB header:electron transport
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex
31d1k8ma_
not modelled 94.7 16 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
32c2l5tA_
not modelled 94.6 19 PDB header:transferase
Chain: A: PDB Molecule:lipoamide acyltransferase;
PDBTitle: solution nmr structure of e2 lipoyl domain from thermoplasma2 acidophilum
33d1qjoa_
not modelled 94.6 18 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
34d1laba_
not modelled 94.3 18 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
35c3csqC_
not modelled 94.1 16 PDB header:hydrolase
Chain: C: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
36c2q8iB_
not modelled 94.0 23 PDB header:transferase
Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of
PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol
37d1gjxa_
not modelled 94.0 25 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
38c1tu2B_
not modelled 93.9 19 PDB header:electron transport
Chain: B: PDB Molecule:apocytochrome f;
PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures
39c2dncA_
not modelled 93.6 18 PDB header:transferase
Chain: A: PDB Molecule:pyruvate dehydrogenase protein x component;
PDBTitle: solution structure of rsgi ruh-054, a lipoyl domain from2 human 2-oxoacid dehydrogenase
40d1y8ob1
not modelled 93.5 23 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
41c3h9iB_
not modelled 92.8 38 PDB header:transport protein
Chain: B: PDB Molecule:cation efflux system protein cusb;
PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli
42c1t5eB_
not modelled 92.7 17 PDB header:transport protein
Chain: B: PDB Molecule:multidrug resistance protein mexa;
PDBTitle: the structure of mexa
43d1e2wa2
not modelled 92.6 22 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
44c2kccA_
not modelled 92.5 14 PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: solution structure of biotinoyl domain from human acetyl-2 coa carboxylase 2
45d1uoua3
not modelled 92.2 19 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
46c1ctmA_
not modelled 91.7 15 PDB header:electron transport(cytochrome)
Chain: A: PDB Molecule:cytochrome f;
PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation
47c2f1mA_
not modelled 91.3 15 PDB header:transport protein
Chain: A: PDB Molecule:acriflavine resistance protein a;
PDBTitle: conformational flexibility in the multidrug efflux system protein acra
48c3fppB_
not modelled 91.2 22 PDB header:membrane protein
Chain: B: PDB Molecule:macrolide-specific efflux protein maca;
PDBTitle: crystal structure of e.coli maca
49c3lnnB_
not modelled 91.0 31 PDB header:metal transport
Chain: B: PDB Molecule:membrane fusion protein (mfp) heavy metal cation efflux
PDBTitle: crystal structure of zneb from cupriavidus metallidurans
50d1pmra_
not modelled 90.8 18 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
51c2e75C_
not modelled 89.8 19 PDB header:photosynthesis
Chain: C: PDB Molecule:apocytochrome f;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
52c3fmcC_
not modelled 88.4 15 PDB header:hydrolase
Chain: C: PDB Molecule:putative succinylglutamate desuccinylase / aspartoacylase;
PDBTitle: crystal structure of a putative succinylglutamate desuccinylase /2 aspartoacylase family protein (sama_0604) from shewanella amazonensis3 sb2b at 1.80 a resolution
53c2dneA_
not modelled 87.9 18 PDB header:transferase
Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase
PDBTitle: solution structure of rsgi ruh-058, a lipoyl domain of2 human 2-oxoacid dehydrogenase
54c2k33A_
not modelled 87.0 19 PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:acra;
PDBTitle: solution structure of an n-glycosylated protein using in2 vitro glycosylation
55d1brwa3
not modelled 85.7 25 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
56d2pnrc1
not modelled 84.3 28 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
57d2tpta3
not modelled 83.3 21 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
58c2aujD_
not modelled 82.6 25 PDB header:transferase
Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert
59d1kl9a2
not modelled 82.2 18 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
60d1q46a2
not modelled 79.2 12 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
61c2qj8B_
not modelled 77.6 18 PDB header:hydrolase
Chain: B: PDB Molecule:mlr6093 protein;
PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution
62c3cdxB_
not modelled 77.2 17 PDB header:hydrolase
Chain: B: PDB Molecule:succinylglutamatedesuccinylase/aspartoacylase;
PDBTitle: crystal structure of2 succinylglutamatedesuccinylase/aspartoacylase from3 rhodobacter sphaeroides
63c1brwB_
not modelled 76.2 25 PDB header:transferase
Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase);
PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation
64c3it5B_
not modelled 76.1 21 PDB header:hydrolase
Chain: B: PDB Molecule:protease lasa;
PDBTitle: crystal structure of the lasa virulence factor from pseudomonas2 aeruginosa
65c2dsjA_
not modelled 75.9 25 PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase;
PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8
66c3h5qA_
not modelled 75.4 25 PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase;
PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus
67c1otpA_
not modelled 74.7 21 PDB header:phosphorylase
Chain: A: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase
68c2j0fC_
not modelled 74.2 21 PDB header:transferase
Chain: C: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design
69c3na6A_
not modelled 65.5 21 PDB header:hydrolase
Chain: A: PDB Molecule:succinylglutamate desuccinylase/aspartoacylase;
PDBTitle: crystal structure of a succinylglutamate desuccinylase (tm1040_2694)2 from silicibacter sp. tm1040 at 2.00 a resolution
70c3a8jF_
not modelled 62.9 33 PDB header:transferase/transport protein
Chain: F: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of et-ehred complex
71d1o4ua2
not modelled 62.0 10 Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:NadC N-terminal domain-like
72d1qpoa2
not modelled 61.5 25 Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:NadC N-terminal domain-like
73c2jkuA_
not modelled 60.8 23 PDB header:ligase
Chain: A: PDB Molecule:propionyl-coa carboxylase alpha chain,
PDBTitle: crystal structure of the n-terminal region of the biotin2 acceptor domain of human propionyl-coa carboxylase
74d2nn6h1
not modelled 57.9 15 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
75d1at0a_
not modelled 56.4 12 Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Hedgehog C-terminal (Hog) autoprocessing domain
76d1qapa2
not modelled 55.7 20 Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:NadC N-terminal domain-like
77c2xhaB_
not modelled 55.0 18 PDB header:transcription
Chain: B: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: crystal structure of domain 2 of thermotoga maritima n-utilization2 substance g (nusg)
78c3i4oA_
not modelled 54.8 30 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis
79d2es2a1
not modelled 53.1 18 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
80c3a0jB_
not modelled 50.9 27 PDB header:transcription
Chain: B: PDB Molecule:cold shock protein;
PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8
81d1ah9a_
not modelled 50.2 25 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
82c2ka7A_
not modelled 49.0 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: nmr solution structure of tm0212 at 40 c
83c3gnnA_
not modelled 48.6 10 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: crystal structure of nicotinate-nucleotide2 pyrophosphorylase from burkholderi pseudomallei
84c2hc8A_
not modelled 48.4 20 PDB header:transport protein
Chain: A: PDB Molecule:cation-transporting atpase, p-type;
PDBTitle: structure of the a. fulgidus copa a-domain
85d1smxa_
not modelled 48.3 16 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
86c1yz6A_
not modelled 48.2 17 PDB header:translation
Chain: A: PDB Molecule:probable translation initiation factor 2 alpha
PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi
87d2z0sa1
not modelled 47.3 16 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
88c3mxuA_
not modelled 46.7 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from bartonella2 henselae
89d1oxxk1
not modelled 46.0 18 Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
90c3ic8D_
not modelled 45.4 18 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized gst-like proteinprotein;
PDBTitle: the crystal structure of a gst-like protein from pseudomonas syringae2 to 2.4a
91c3sy6A_
not modelled 45.4 25 PDB header:cell adhesion
Chain: A: PDB Molecule:fimbrial protein bf1861;
PDBTitle: crystal structure of a fimbrial protein bf1861 [bacteroides fragilis2 nctc 9343] (bf1861) from bacteroides fragilis nctc 9343 at 1.90 a3 resolution
92d1tu2b2
not modelled 45.2 33 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
93d1g6pa_
not modelled 44.2 17 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
94c3tqvA_
not modelled 44.0 15 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: structure of the nicotinate-nucleotide pyrophosphorylase from2 francisella tularensis.
95c3pajA_
not modelled 43.1 25 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating;
PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961
96c2xhcA_
not modelled 43.0 18 PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg)
97c3t2lA_
not modelled 41.5 17 PDB header:cell adhesion
Chain: A: PDB Molecule:putative cell adhesion protein;
PDBTitle: crystal structure of a putative cell adhesion protein (bf1858) from2 bacteroides fragilis nctc 9343 at 2.33 a resolution
98d1onla_
not modelled 41.5 18 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
99d1hpca_
not modelled 41.3 14 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
100c1vdzA_
not modelled 41.2 22 PDB header:hydrolase
Chain: A: PDB Molecule:a-type atpase subunit a;
PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3
101c3iftA_
not modelled 41.2 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from2 mycobacterium tuberculosis, using x-rays from the compact light3 source.
102d2je6i2
not modelled 40.8 19 Fold:Barrel-sandwich hybrid
Superfamily:Ribosomal L27 protein-like
Family:ECR1 N-terminal domain-like
103c1qapA_
not modelled 40.7 20 PDB header:glycosyltransferase
Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase;
PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid
104c2eqsA_
not modelled 39.6 17 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dhx8;
PDBTitle: solution structure of the s1 rna binding domain of human2 atp-dependent rna helicase dhx8
105c2edgA_
not modelled 39.1 24 PDB header:biosynthetic protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: solution structure of the gcv_h domain from mouse glycine
106c1q46A_
not modelled 38.7 10 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit;
PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia
107c1x1oC_
not modelled 38.0 25 PDB header:transferase
Chain: C: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: crystal structure of project id tt0268 from thermus thermophilus hb8
108c1q8kA_
not modelled 35.9 12 PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 2
PDBTitle: solution structure of alpha subunit of human eif2
109c1o4uA_
not modelled 35.6 11 PDB header:transferase
Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase;
PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution
110c3l0gD_
not modelled 34.7 25 PDB header:transferase
Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution
111d1hcza2
not modelled 34.6 19 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
112c2kcmA_
not modelled 34.0 27 PDB header:nucleic acid binding protein
Chain: A: PDB Molecule:cold shock domain family protein;
PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a.
113d1d7qa_
not modelled 33.4 24 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
114c2kncA_
not modelled 33.1 5 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
115c2jbmA_
not modelled 32.9 21 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: qprtase structure from human
116d1y14b1
not modelled 32.9 10 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
117d1c9oa_
not modelled 32.3 20 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
118c1qpoA_
not modelled 31.9 24 PDB header:transferase
Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase;
PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis
119d2ba0a1
not modelled 31.5 15 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
120d2uube1
not modelled 31.0 15 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0