PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2qf7A_

Fold library id	PDB Header	Molecule	Title
c2qf7A_	PDB header: ligase	Chain: A: PDB Molecule: pyruvate carboxylase protein;	PDBTitle: crystal structure of a complete multifunctional pyruvate2 carboxylase from rhizobium etli

Links to external resources
Added to library: Tue Mar 16 14:27:30 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G P I S K I L V A N R S E I A I R V F R A A N E L G I K T V A I W A E E D K L A L H R F K A D E S Y Q V G R G P H L A R D L G P I E S Y L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G T T
S S S S
S
S T T S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I D E V I R V A K L S G A D A I H P G Y G L L S E S P E F V D A C N K A G I I F I G P K A D T M R Q L G N K V A A R N L A I S V G V P V V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S S T T T T
T T
S S
S T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L V E R A R H V E S Q I L G D T H G N V V H L F E R D C S V Q R R N Q K V V E R A P A P Y L S E A Q R Q E L A A Y S L K I A G A T N Y I G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
T T S
T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G T V E Y L M D A D T G K F Y F I E V N P R I Q V E H T V T E V V T G I D I V K A Q I H I L D G A A I G T P Q S G V P N Q E D I R L N G H A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S
T T
T T
T T S G G G T
G G G
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L Q C R V T T E D P E H N F I P D Y G R I T A Y R S A S G F G I R L D G G T S Y S G A I I T R Y Y D P L L V K V T A W A P N P L E A I S R M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T T T
T T
S
T T
S S S
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence D R A L R E F R I R G V A T N L T F L E A I I G H P K F R D N S Y T T R F I D T T P E L F Q Q V K R Q D R A T K L L T Y L A D V T V N G H P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S T S T T
T T T T T T
G G G G
T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence E A K D R P K P L E N A A R P V V P Y A G N G V K D G T K Q L L D T L G P K K F G E W M R N E K R V L L T D T T M R D G H Q S L L A T R M R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S
S S
S
S S
T T T T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence T Y D I A R I A G T Y S H A L P N L L S L E C W G G A T F D V S M R F L T E D P W E R L A L I R E G A P N L L L Q M L L R G A N G V G Y T N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T
T T S T T T B T
S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence Y P D N V V K Y F V R Q A A K G G I D L F R V F D C L N W V E N M R V S M D A I A E E N K L C E A A I C Y T G D I L N S A R P K Y D L K Y Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
G G G G T T
S
T T
T T S G G G

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence T N L A V E L E K A G A H I I A V D M A G L L K P A A A K V L F K A L R E A T G L P I H F H T H D T S G I A A A T V L A A V E A G V D A V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
S S
B T T S
T T
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence A A M D A L S G N T S Q P C L G S I V E A L S G S E R D P G L D P A W I R R I S F Y W E A V R N Q Y A A F E S D L K G P A S E V Y L H E M P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
G G G
S B T S
B T T S T T
G G G G G G
S
T T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence G G Q F T N L K E Q A R S L G L E T R W H Q V A Q A Y A D A N Q M F G D I V K V T P S S K V V G D M A L M M V S Q D L T V A D V V S P D R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G T T S
S T T T
T T S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence V S F P E S V V S M L K G D L G Q P P S G W P E A L Q K K A L K G E K P Y T V R P G S L L K E A D L D A E R K V I E K K L E R E V S D F E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
T T
S
G G G G S
T S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence A S Y L M Y P K V F T D F A L A S D T Y G P V S V L P T P A Y F Y G L A D G E E L F A D I E K G K T L V I V N Q A V S A T D S Q G M V T V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
T T
T T
T T S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence F E L N G Q P R R I K V P D R A H G A T G A A V R R K A E P G N A A H V G A P M P G V I S R V F V S S G Q A V D V L V S I E A E T A I H A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G T
S
S
B
T T
T T
S S
S S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . .

Sequence K D G T I A E V L V K A G D Q I D A K D L L A V Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S
T T B

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	P	I	S	K	I	L	V	A	N	R	S	E	I	A	I	R	V	F	R	A	A	N	E	L	G	I	K	T	V	A	I	W	A	E	E	D	K	L	A	L	H	R	F	K	A	D	E	S	Y	Q	V	G	R	G	P	H	L	A	R	D	L	G	P	I	E	S	Y	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									T	T									G	G	G	T	T						S	S	S	S					S		S	T	T	S	S	S				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	D	E	V	I	R	V	A	K	L	S	G	A	D	A	I	H	P	G	Y	G	L	L	S	E	S	P	E	F	V	D	A	C	N	K	A	G	I	I	F	I	G	P	K	A	D	T	M	R	Q	L	G	N	K	V	A	A	R	N	L	A	I	S	V	G	V	P	V	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T		S						S	S	T	T	T	T											T	T				S	S											S											T	T			B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	V	E	R	A	R	H	V	E	S	Q	I	L	G	D	T	H	G	N	V	V	H	L	F	E	R	D	C	S	V	Q	R	R	N	Q	K	V	V	E	R	A	P	A	P	Y	L	S	E	A	Q	R	Q	E	L	A	A	Y	S	L	K	I	A	G	A	T	N	Y	I	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S												T	T	S															T	T								S		T	T																				T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	T	V	E	Y	L	M	D	A	D	T	G	K	F	Y	F	I	E	V	N	P	R	I	Q	V	E	H	T	V	T	E	V	V	T	G	I	D	I	V	K	A	Q	I	H	I	L	D	G	A	A	I	G	T	P	Q	S	G	V	P	N	Q	E	D	I	R	L	N	G	H	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T	T										S			T	T																					T	T			T	T	S	G	G	G	T				G	G	G					S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	Q	C	R	V	T	T	E	D	P	E	H	N	F	I	P	D	Y	G	R	I	T	A	Y	R	S	A	S	G	F	G	I	R	L	D	G	G	T	S	Y	S	G	A	I	I	T	R	Y	Y	D	P	L	L	V	K	V	T	A	W	A	P	N	P	L	E	A	I	S	R	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S			T	T	T	T	T																T	T							S			T	T					S	S	S												S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	D	R	A	L	R	E	F	R	I	R	G	V	A	T	N	L	T	F	L	E	A	I	I	G	H	P	K	F	R	D	N	S	Y	T	T	R	F	I	D	T	T	P	E	L	F	Q	Q	V	K	R	Q	D	R	A	T	K	L	L	T	Y	L	A	D	V	T	V	N	G	H	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S			S									T	S					T	T				T	T	T	T	T	T		G	G	G	G																									T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	E	A	K	D	R	P	K	P	L	E	N	A	A	R	P	V	V	P	Y	A	G	N	G	V	K	D	G	T	K	Q	L	L	D	T	L	G	P	K	K	F	G	E	W	M	R	N	E	K	R	V	L	L	T	D	T	T	M	R	D	G	H	Q	S	L	L	A	T	R	M	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	S					S	S												S																									S	S							T	T	T								T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	T	Y	D	I	A	R	I	A	G	T	Y	S	H	A	L	P	N	L	L	S	L	E	C	W	G	G	A	T	F	D	V	S	M	R	F	L	T	E	D	P	W	E	R	L	A	L	I	R	E	G	A	P	N	L	L	L	Q	M	L	L	R	G	A	N	G	V	G	Y	T	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T		S							T	T																									T	T	S								T	T	T	B	T		S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	Y	P	D	N	V	V	K	Y	F	V	R	Q	A	A	K	G	G	I	D	L	F	R	V	F	D	C	L	N	W	V	E	N	M	R	V	S	M	D	A	I	A	E	E	N	K	L	C	E	A	A	I	C	Y	T	G	D	I	L	N	S	A	R	P	K	Y	D	L	K	Y	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T									T	T			G	G	G	G										T	T											S		T	T		T	T	S	G	G	G
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	T	N	L	A	V	E	L	E	K	A	G	A	H	I	I	A	V	D	M	A	G	L	L	K	P	A	A	A	K	V	L	F	K	A	L	R	E	A	T	G	L	P	I	H	F	H	T	H	D	T	S	G	I	A	A	A	T	V	L	A	A	V	E	A	G	V	D	A	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T		S						T	T																				S	S								B	T	T	S												T	T		S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	A	A	M	D	A	L	S	G	N	T	S	Q	P	C	L	G	S	I	V	E	A	L	S	G	S	E	R	D	P	G	L	D	P	A	W	I	R	R	I	S	F	Y	W	E	A	V	R	N	Q	Y	A	A	F	E	S	D	L	K	G	P	A	S	E	V	Y	L	H	E	M	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B		G	G	G		S	B	T	S			B									T	T	S	T	T																					G	G	G	G	G	G						S			T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	G	G	Q	F	T	N	L	K	E	Q	A	R	S	L	G	L	E	T	R	W	H	Q	V	A	Q	A	Y	A	D	A	N	Q	M	F	G	D	I	V	K	V	T	P	S	S	K	V	V	G	D	M	A	L	M	M	V	S	Q	D	L	T	V	A	D	V	V	S	P	D	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T		G	G	G															T	T	S				S	T	T																T									T	T	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	V	S	F	P	E	S	V	V	S	M	L	K	G	D	L	G	Q	P	P	S	G	W	P	E	A	L	Q	K	K	A	L	K	G	E	K	P	Y	T	V	R	P	G	S	L	L	K	E	A	D	L	D	A	E	R	K	V	I	E	K	K	L	E	R	E	V	S	D	F	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T				T	T												T	T						S		G	G	G	G	S																	T	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	A	S	Y	L	M	Y	P	K	V	F	T	D	F	A	L	A	S	D	T	Y	G	P	V	S	V	L	P	T	P	A	Y	F	Y	G	L	A	D	G	E	E	L	F	A	D	I	E	K	G	K	T	L	V	I	V	N	Q	A	V	S	A	T	D	S	Q	G	M	V	T	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							G	G	G	S											T	T									T	T															T	T	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	F	E	L	N	G	Q	P	R	R	I	K	V	P	D	R	A	H	G	A	T	G	A	A	V	R	R	K	A	E	P	G	N	A	A	H	V	G	A	P	M	P	G	V	I	S	R	V	F	V	S	S	G	Q	A	V	D	V	L	V	S	I	E	A	E	T	A	I	H	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T										G	G	G	T			S				S		B			T	T		T	T					S	S										S	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.
Sequence	K	D	G	T	I	A	E	V	L	V	K	A	G	D	Q	I	D	A	K	D	L	L	A	V	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S										S	S					T	T	B