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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1q90A_

Fold library idPDB HeaderMoleculeTitle
c1q90A_PDB header: photosynthesisChain: A: PDB Molecule: apocytochrome f;PDBTitle: structure of the cytochrome b6f (plastohydroquinone :2 plastocyanin oxidoreductase) from chlamydomonas reinhardtii


Added to library: Tue Mar 16 13:16:38 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YPVFAQQNYANPREANGRIVCANCHLAQKAVEIEVPQAVLPDTVFEAVIELPYDKQVKQVLANGKKGDLN
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Known secondary structure (DSSP)

SSSB
TTS
BT


B




S
SS




TTS

SSSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence VGMVLILPEGFELAPPDRVPAEIKEKVGNLYYQPYSPEQKNILVVGPVPGKKYSEMVVPILSPDPAKNKN
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Known secondary structure (DSSP)

TT


GGGS

S


SSSS
TTTTT
S


TTT
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VSYLKYPIYFGGNRGRGQVYPDGKKSNNTIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPA
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Known secondary structure (DSSP)

S
S

S

TTS


TTS

B
SSS

TTT


SSS

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence GPDLIVKEGQTVQADQPLTNNPNVGGFGQAETEIVLQNPARIQGLLVFFSFVLLTQVLLVLKKKQFEKVQ
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Known secondary structure (DSSP) SS
B


TT

TT
BSB







 .........290..
Sequence LAEMNFHHHHHH
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Known secondary structure (DSSP) TS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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