Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	F	A	I	V	V	T	G	P	A	Y	G	T	Q	Q	A	S	S	A	F	Q	F	A	Q	A	L	I	A	D	G	H	E	L	S	S	V	F	F	Y	R	E	G	V	Y	N	A	N	Q	L	T	S	P	A	S	D	E	F	D	L
Secondary structure
SS confidence
Disorder		?											?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	R	A	W	Q	Q	L	N	A	Q	H	G	V	A	L	N	I	C	V	A	A	A	L	R	R	G	V	V	D	E	T	E	A	G	R	L	G	L	A	S	S	N	L	Q	Q	G	F	T	L	S	G	L	G	A	L	A	E	A	S	L
Secondary structure
SS confidence
Disorder																																	?	?		?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		T	C	D	R	V	V	Q	F
Secondary structure
SS confidence
Disorder								?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2d1p chain A domain 1 Region: 1 - 128 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 100% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 2hy5 chain A domain 1 Region: 1 - 128 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 45% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 1jx7 chain A Region: 2 - 128 Aligned: 114 Modelled: 127 Confidence: 100.0% Identity: 23% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 2hy5 chain B domain 1 Region: 1 - 128 Aligned: 127 Modelled: 128 Confidence: 100.0% Identity: 16% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 2d1p chain B domain 1 Region: 1 - 128 Aligned: 117 Modelled: 118 Confidence: 99.9% Identity: 23% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 3mc3 chain A Region: 2 - 128 Aligned: 107 Modelled: 116 Confidence: 99.9% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsre/dsrf-like family protein; PDBTitle: crystal structure of dsre/dsrf-like family protein (np_342589.1) from2 sulfolobus solfataricus at 1.49 a resolution Phyre2 PDB 2qs7 chain D Region: 2 - 126 Aligned: 110 Modelled: 125 Confidence: 99.6% Identity: 15% PDB header:oxidoreductase Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative oxidoreductase of the dsre/dsrf-like2 family (sso1126) from sulfolobus solfataricus p2 at 2.09 a resolution Phyre2 PDB 3pnx chain F Region: 2 - 126 Aligned: 110 Modelled: 113 Confidence: 99.4% Identity: 13% PDB header:transferase Chain: F: PDB Molecule:putative sulfurtransferase dsre; PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution Phyre2 PDB 2hy5 chain C domain 1 Region: 3 - 127 Aligned: 98 Modelled: 114 Confidence: 99.2% Identity: 22% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrH-like Phyre2 PDB 2pd2 chain A Region: 1 - 121 Aligned: 97 Modelled: 110 Confidence: 98.4% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st0148; PDBTitle: crystal structure of (st0148) conserved hypothetical from sulfolobus2 tokodaii strain7 Phyre2 PDB 2fb6 chain A Region: 2 - 127 Aligned: 106 Modelled: 126 Confidence: 98.3% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of conserved protein of unknown function bt1422 from2 bacteroides thetaiotaomicron Phyre2 PDB 2d1p chain C domain 1 Region: 4 - 127 Aligned: 93 Modelled: 113 Confidence: 98.3% Identity: 14% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrH-like Phyre2 PDB 1l1s chain A Region: 2 - 121 Aligned: 99 Modelled: 107 Confidence: 98.1% Identity: 17% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrEF-like Phyre2 PDB 1x9a chain A Region: 4 - 126 Aligned: 84 Modelled: 105 Confidence: 98.0% Identity: 18% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrH-like Phyre2 PDB 3oy2 chain A Region: 1 - 42 Aligned: 40 Modelled: 42 Confidence: 90.5% Identity: 20% PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a Phyre2 PDB 3lcm chain B Region: 1 - 78 Aligned: 77 Modelled: 77 Confidence: 88.5% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 Phyre2 PDB 2gej chain A Region: 1 - 78 Aligned: 77 Modelled: 78 Confidence: 88.5% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man Phyre2 PDB 2qzs chain A Region: 1 - 38 Aligned: 37 Modelled: 38 Confidence: 88.3% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) Phyre2 PDB 1gsa chain A domain 1 Region: 1 - 42 Aligned: 41 Modelled: 42 Confidence: 87.3% Identity: 20% Fold: PreATP-grasp domain Superfamily: PreATP-grasp domain Family: Prokaryotic glutathione synthetase, N-terminal domain Phyre2 PDB 1gsh chain A Region: 1 - 38 Aligned: 37 Modelled: 38 Confidence: 86.9% Identity: 22% PDB header:glutathione biosynthesis ligase Chain: A: PDB Molecule:glutathione biosynthetic ligase; PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5 Phyre2 1 d2d1pa1 2 d2hy5a1 3 d1jx7a_ 4 d2hy5b1 5 d2d1pb1 6 c3mc3A_ 7 c2qs7D_ 8 c3pnxF_ 9 d2hy5c1 10 c2pd2A_ 11 c2fb6A_ 12 d2d1pc1 13 d1l1sa_ 14 d1x9aa_ 15 c3oy2A_ 16 c3lcmB_ 17 c2gejA_ 18 c2qzsA_ 19 d1gsaa1 20 c1gshA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2d1pa1 100.0 100 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 2 d2hy5a1 100.0 45 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 3 d1jx7a_ 100.0 23 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 4 d2hy5b1 100.0 16 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 5 d2d1pb1 99.9 23 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 6 c3mc3A_ 99.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsre/dsrf-like family protein; PDBTitle: crystal structure of dsre/dsrf-like family protein (np_342589.1) from2 sulfolobus solfataricus at 1.49 a resolution 7 c2qs7D_ 99.6 15 PDB header:oxidoreductase Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative oxidoreductase of the dsre/dsrf-like2 family (sso1126) from sulfolobus solfataricus p2 at 2.09 a resolution 8 c3pnxF_ 99.4 13 PDB header:transferase Chain: F: PDB Molecule:putative sulfurtransferase dsre; PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution 9 d2hy5c1 99.2 22 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrH-like 10 c2pd2A_ 98.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st0148; PDBTitle: crystal structure of (st0148) conserved hypothetical from sulfolobus2 tokodaii strain7 11 c2fb6A_ 98.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of conserved protein of unknown function bt1422 from2 bacteroides thetaiotaomicron 12 d2d1pc1 98.3 14 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrH-like 13 d1l1sa_ 98.1 17 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 14 d1x9aa_ 98.0 18 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrH-like 15 c3oy2A_ 90.5 20 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 16 c3lcmB_ 88.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 17 c2gejA_ 88.5 19 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 18 c2qzsA_ 88.3 24 PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) 19 d1gsaa1 87.3 20 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Prokaryotic glutathione synthetase, N-terminal domain 20 c1gshA_ 86.9 22 PDB header:glutathione biosynthesis ligase Chain: A: PDB Molecule:glutathione biosynthetic ligase; PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5 21 d1rzua_ not modelled 86.3 19 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 22 d1pn3a_ not modelled 86.0 21 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 23 c2p6pB_ not modelled 85.4 24 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 24 d2bisa1 not modelled 84.9 26 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 25 d1rrva_ not modelled 84.7 24 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 26 d1iira_ not modelled 81.7 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 27 d1qrda_ not modelled 81.6 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 28 c3ia7A_ not modelled 76.4 14 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 29 c2jjmH_ not modelled 76.1 18 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 30 c2gk4A_ not modelled 75.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: the crystal structure of the dna/pantothenate metabolism flavoprotein2 from streptococcus pneumoniae 31 c3c4vB_ not modelled 75.8 17 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 32 d1pvda1 not modelled 75.4 15 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 33 d1rtta_ not modelled 73.4 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 34 d1f0ka_ not modelled 70.7 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 35 d1udca_ not modelled 69.4 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 36 c3iaaB_ not modelled 68.9 19 PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form 37 c3hbjA_ not modelled 68.2 9 PDB header:transferase Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase; PDBTitle: structure of ugt78g1 complexed with udp 38 c2iv3B_ not modelled 66.0 11 PDB header:transferase Chain: B: PDB Molecule:glycosyltransferase; PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis 39 c2q1wC_ not modelled 63.9 23 PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ 40 c3icpA_ not modelled 62.2 43 PDB header:isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of udp-galactose 4-epimerase 41 d2blna2 not modelled 62.0 17 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 42 c2iyaB_ not modelled 61.3 25 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 43 d1p9oa_ not modelled 61.2 30 Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like 44 c2iyfA_ not modelled 60.4 19 PDB header:transferase Chain: A: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 45 d1kewa_ not modelled 60.4 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 46 c1hyqA_ not modelled 60.2 28 PDB header:cell cycle Chain: A: PDB Molecule:cell division inhibitor (mind-1); PDBTitle: mind bacterial cell division regulator from a. fulgidus 47 d1hyqa_ not modelled 60.2 28 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 48 d1fmta2 not modelled 60.1 19 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 49 c2pk3B_ not modelled 59.3 30 PDB header:oxidoreductase Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase; PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase 50 d1bxka_ not modelled 58.3 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 51 c2pzlB_ not modelled 57.4 33 PDB header:sugar binding protein Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp 52 d1v59a2 not modelled 57.0 14 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 53 c3othB_ not modelled 56.7 19 PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form 54 c2p5uC_ not modelled 56.5 37 PDB header:isomerase Chain: C: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad 55 d2bw0a2 not modelled 56.1 18 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 56 c3m2pD_ not modelled 54.3 23 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase; PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus 57 d1u7za_ not modelled 53.0 18 Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like 58 d1r6da_ not modelled 52.9 37 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 59 d1ubea1 not modelled 52.1 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 60 c3fmfA_ not modelled 51.7 28 PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate 61 d1ebda2 not modelled 51.4 12 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 62 c2recB_ not modelled 50.3 20 PDB header:helicase PDB COMPND: 63 d1s3ia2 not modelled 49.5 16 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 64 c3io5B_ not modelled 47.3 13 PDB header:dna binding protein Chain: B: PDB Molecule:recombination and repair protein; PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4 65 d1vhta_ not modelled 45.0 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 66 c3cr8C_ not modelled 44.2 14 PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans 67 c3d0qB_ not modelled 43.9 13 PDB header:transferase Chain: B: PDB Molecule:protein calg3; PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222 68 c2ggsB_ not modelled 42.8 21 PDB header:oxidoreductase Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii 69 d2qwxa1 not modelled 41.7 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 70 d2c1xa1 not modelled 39.8 18 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 71 d1hdoa_ not modelled 39.7 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 72 c2x4gA_ not modelled 38.9 30 PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa 73 c2w93A_ not modelled 38.4 16 PDB header:lyase Chain: A: PDB Molecule:pyruvate decarboxylase isozyme 1; PDBTitle: crystal structure of the saccharomyces cerevisiae pyruvate2 decarboxylase variant e477q in complex with the surrogate3 pyruvamide 74 c3ouzA_ not modelled 38.2 9 PDB header:ligase Chain: A: PDB Molecule:biotin carboxylase; PDBTitle: crystal structure of biotin carboxylase-adp complex from campylobacter2 jejuni 75 c2x0dA_ not modelled 37.0 10 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 76 d2pq6a1 not modelled 36.9 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 77 d1ydga_ not modelled 36.7 26 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 78 d1oc2a_ not modelled 36.5 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 79 d1zpda1 not modelled 36.3 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 80 c3kjgB_ not modelled 36.0 18 PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory PDBTitle: adp-bound state of cooc1 81 d1jjva_ not modelled 35.7 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 82 d1dxla2 not modelled 35.7 10 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 83 c3rfxB_ not modelled 35.6 26 PDB header:oxidoreductase Chain: B: PDB Molecule:uronate dehydrogenase; PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad 84 c2bekB_ not modelled 35.2 18 PDB header:chromosome segregation Chain: B: PDB Molecule:segregation protein; PDBTitle: structure of the bacterial chromosome segregation protein2 soj 85 d3lada2 not modelled 35.0 12 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 86 c3e5nA_ not modelled 35.0 19 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331 87 c2hunB_ not modelled 34.8 23 PDB header:lyase Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase; PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3 88 c3ibgF_ not modelled 34.5 13 PDB header:hydrolase Chain: F: PDB Molecule:atpase, subunit of the get complex; PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp 89 c2qe7C_ not modelled 33.6 17 PDB header:hydrolase Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 90 c2gpwC_ not modelled 33.1 11 PDB header:ligase Chain: C: PDB Molecule:biotin carboxylase; PDBTitle: crystal structure of the biotin carboxylase subunit, f363a2 mutant, of acetyl-coa carboxylase from escherichia coli. 91 c3of5A_ not modelled 32.5 3 PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of a dethiobiotin synthetase from francisella2 tularensis subsp. tularensis schu s4 92 c3p0rA_ not modelled 32.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 93 d2q46a1 not modelled 32.3 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 94 d1n2sa_ not modelled 31.9 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 95 d1nksa_ not modelled 30.5 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 96 c2r60A_ not modelled 30.0 14 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 97 c1ulzA_ not modelled 29.9 13 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain; PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase 98 d1ovma1 not modelled 29.7 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 99 d2blla1 not modelled 29.0 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 100 d1nhpa2 not modelled 28.5 10 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 101 c3sc6F_ not modelled 28.2 19 PDB header:oxidoreductase Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase; PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp 102 c2vedA_ not modelled 28.2 24 PDB header:transferase Chain: A: PDB Molecule:membrane protein capa1, protein tyrosine kinase; PDBTitle: crystal structure of the chimerical mutant capabk55m2 protein 103 c1w0jB_ not modelled 27.7 20 PDB header:hydrolase Chain: B: PDB Molecule:atp synthase alpha chain heart isoform, PDBTitle: beryllium fluoride inhibited bovine f1-atpase 104 c3okaA_ not modelled 27.2 11 PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) 105 d1onfa2 not modelled 26.6 8 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 106 d1ojta2 not modelled 26.5 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 107 c3bjrA_ not modelled 25.0 18 PDB header:hydrolase Chain: A: PDB Molecule:putative carboxylesterase; PDBTitle: crystal structure of a putative carboxylesterase (lp_1002) from2 lactobacillus plantarum wcfs1 at 2.09 a resolution 108 d1vmda_ not modelled 25.0 19 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 109 c1qzuB_ not modelled 24.8 22 PDB header:lyase Chain: B: PDB Molecule:hypothetical protein mds018; PDBTitle: crystal structure of human phosphopantothenoylcysteine decarboxylase 110 d1t5ba_ not modelled 24.0 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 111 d2c5aa1 not modelled 23.8 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 112 c2x6rA_ not modelled 23.8 19 PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose 113 d3grsa2 not modelled 23.7 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 114 c3cioA_ not modelled 23.3 11 PDB header:signaling protein, transferase Chain: A: PDB Molecule:tyrosine-protein kinase etk; PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk 115 d1fjha_ not modelled 23.2 31 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 116 c2w0mA_ not modelled 22.4 25 PDB header:unknown function Chain: A: PDB Molecule:sso2452; PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2 117 d2acva1 not modelled 22.3 20 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 118 d2afhe1 not modelled 21.6 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 119 c2derA_ not modelled 21.6 17 PDB header:transferase/rna Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma; PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state 120 d1djqa2 not modelled 21.4 14 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0