PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2gk4A_

Fold library id	PDB Header	Molecule	Title
c2gk4A_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: conserved hypothetical protein;	PDBTitle: the crystal structure of the dna/pantothenate metabolism2 flavoprotein from streptococcus pneumoniae

Links to external resources
Added to library: Tue Mar 16 13:48:25 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A X K I L V T S G G T S E A I D S V R S I T N H S T G H L G K I I T E T L L S A G Y E V C L I T T K R A L K P E P H P N L S I R E I T N T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B
S S S S
T T
T T S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D L L I E X Q E R V Q D Y Q V L I H S X A V S D Y T P V Y X T G L E E V Q A S S N L K E F L S K Q N H Q A K I S S T D E V Q V L F L K K T P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
S B
S
S
G G G G G G
G G G
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K I I S L V K E W N P T I H L I G F K L L V D V T E D H L V D I A R K S L I K N Q A D L I I A N D L T Q I S A D Q H R A I F V E K N Q L Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S
T
S G G G B
S S
B
S S

. . . . . . . . . 220 . . . . . . . . .

Sequence V Q T K E E I A E L L L E K I Q A Y H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	X	K	I	L	V	T	S	G	G	T	S	E	A	I	D	S	V	R	S	I	T	N	H	S	T	G	H	L	G	K	I	I	T	E	T	L	L	S	A	G	Y	E	V	C	L	I	T	T	K	R	A	L	K	P	E	P	H	P	N	L	S	I	R	E	I	T	N	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	B					S	S	S	S																						T	T									T	T	S							T	T								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	L	L	I	E	X	Q	E	R	V	Q	D	Y	Q	V	L	I	H	S	X	A	V	S	D	Y	T	P	V	Y	X	T	G	L	E	E	V	Q	A	S	S	N	L	K	E	F	L	S	K	Q	N	H	Q	A	K	I	S	S	T	D	E	V	Q	V	L	F	L	K	K	T	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										G	G	G		S						S	B			S																S		G	G	G	G	G	G			G	G	G					T	T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	I	I	S	L	V	K	E	W	N	P	T	I	H	L	I	G	F	K	L	L	V	D	V	T	E	D	H	L	V	D	I	A	R	K	S	L	I	K	N	Q	A	D	L	I	I	A	N	D	L	T	Q	I	S	A	D	Q	H	R	A	I	F	V	E	K	N	Q	L	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S									S	S																		T		S							G	G	G	B		S	S		B							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	V	Q	T	K	E	E	I	A	E	L	L	L	E	K	I	Q	A	Y	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S														T	T