Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	S	Q	R	N	L	L	V	I	A	L	L	F	V	S	F	M	I	W	Q	A	W	E	Q	D	K	N	P	Q	P	Q	A	Q	Q	T	T	Q	T	T	T	T	A	A	G	S	A	A	D	Q	G	V	P	A	S	G	Q	G	K	L
Secondary structure
SS confidence
Disorder		?	?	?	?																					?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	S	V	K	T	D	V	L	D	L	T	I	N	T	R	G	G	D	V	E	Q	A	L	L	P	A	Y	P	K	E	L	N	S	T	Q	P	F	Q	L	L	E	T	S	P	Q	F	I	Y	Q	A	Q	S	G	L	T	G	R	D	G	P
Secondary structure
SS confidence
Disorder																														?	?	?	?	?		?									?	?	?	?	?							?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	N	P	A	N	G	P	R	P	L	Y	N	V	E	K	D	A	Y	V	L	A	E	G	Q	N	E	L	Q	V	P	M	T	Y	T	D	A	A	G	N	T	F	T	K	T	F	V	L	K	R	G	D	Y	A	V	N	V	N	Y	N	V
Secondary structure
SS confidence
Disorder		?	?	?		?		?	?		?					?	?	?	?	?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	N	A	G	E	K	P	L	E	I	S	S	F	G	Q	L	K	Q	S	I	T	L	P	P	H	L	D	T	G	S	S	N	F	A	L	H	T	F	R	G	A	A	Y	S	T	P	D	E	K	Y	E	K	Y	K	F	D	T	I	A	D
Secondary structure
SS confidence
Disorder											?	?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																		?			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	E	N	L	N	I	S	S	K	G	G	W	V	A	M	L	Q	Q	Y	F	A	T	A	W	I	P	H	N	D	G	T	N	N	F	Y	T	A	N	L	G	N	G	I	A	A	I	G	Y	K	S	Q	P	V	L	V	Q	P	G	Q	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																							?	?				?	?	?	?	?	?	?							?	?	?	?	?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	A	M	N	S	T	L	W	V	G	P	E	I	Q	D	K	M	A	A	V	A	P	H	L	D	L	T	V	D	Y	G	W	L	W	F	I	S	Q	P	L	F	K	L	L	K	W	I	H	S	F	V	G	N	W	G	F	S	I	I	I
Secondary structure
SS confidence
Disorder		?	?																		?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	T	F	I	V	R	G	I	M	Y	P	L	T	K	A	Q	Y	T	S	M	A	K	M	R	M	L	Q	P	K	I	Q	A	M	R	E	R	L	G	D	D	K	Q	R	I	S	Q	E	M	M	A	L	Y	K	A	E	K	V	N	P	L
Secondary structure
SS confidence
Disorder																												?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		G	G	C	F	P	L	L	I	Q	M	P	I	F	L	A	L	Y	Y	M	L	M	G	S	V	E	L	R	Q	A	P	F	A	L	W	I	H	D	L	S	A	Q	D	P	Y	Y	I	L	P	I	L	M	G	V	T	M	F	F	I	Q	K
Secondary structure
SS confidence
Disorder																										?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		M	S	P	T	T	V	T	D	P	M	Q	Q	K	I	M	T	F	M	P	V	I	F	T	V	F	F	L	W	F	P	S	G	L	V	L	Y	Y	I	V	S	N	L	V	T	I	I	Q	Q	Q	L	I	Y	R	G	L	E	K	R	G	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																																																?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		H	S	R	E	K	K	K	S
Secondary structure
SS confidence
Disorder		?	?		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3blc chain B Region: 56 - 341 Aligned: 276 Modelled: 286 Confidence: 100.0% Identity: 94% PDB header:chaperone,protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc Phyre2 PDB 3bs6 chain B Region: 56 - 330 Aligned: 260 Modelled: 260 Confidence: 100.0% Identity: 98% PDB header:membrane protein, protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc Phyre2 PDB 1z45 chain A domain 1 Region: 57 - 191 Aligned: 127 Modelled: 135 Confidence: 97.7% Identity: 9% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 1yga chain A Region: 59 - 191 Aligned: 130 Modelled: 132 Confidence: 97.4% Identity: 12% PDB header:isomerase Chain: A: PDB Molecule:hypothetical 37.9 kda protein in bio3-hxt17 PDBTitle: crystal structure of saccharomyces cerevisiae yn9a protein,2 new york structural genomics consortium Phyre2 PDB 2htb chain B Region: 59 - 191 Aligned: 126 Modelled: 133 Confidence: 97.3% Identity: 8% PDB header:isomerase Chain: B: PDB Molecule:putative enzyme related to aldose 1-epimerase; PDBTitle: crystal structure of a putative mutarotase (yead) from2 salmonella typhimurium in monoclinic form Phyre2 PDB 1lur chain A Region: 58 - 192 Aligned: 128 Modelled: 135 Confidence: 97.3% Identity: 13% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 3dcd chain A Region: 60 - 307 Aligned: 246 Modelled: 234 Confidence: 97.0% Identity: 9% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from2 lactobacillus acidophilus at the resolution 1.9a. northeast3 structural genomics consortium target lar33. Phyre2 PDB 3nre chain B Region: 58 - 191 Aligned: 132 Modelled: 133 Confidence: 97.0% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative aldose 1-epimerase (b2544) from2 escherichia coli k12 at 1.59 a resolution Phyre2 PDB 3q1n chain A Region: 60 - 192 Aligned: 124 Modelled: 132 Confidence: 97.0% Identity: 21% PDB header:isomerase Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: crystal structure of a galactose mutarotase-like protein (lsei_2598)2 from lactobacillus casei atcc 334 at 1.61 a resolution Phyre2 PDB 3mwx chain A Region: 59 - 192 Aligned: 132 Modelled: 134 Confidence: 96.9% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative galactose mutarotase (bsu18360) from2 bacillus subtilis at 1.45 a resolution Phyre2 PDB 1z45 chain A Region: 50 - 192 Aligned: 143 Modelled: 142 Confidence: 96.6% Identity: 10% PDB header:isomerase Chain: A: PDB Molecule:gal10 bifunctional protein; PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose Phyre2 PDB 3imh chain B Region: 59 - 190 Aligned: 131 Modelled: 132 Confidence: 96.5% Identity: 12% PDB header:isomerase Chain: B: PDB Molecule:galactose-1-epimerase; PDBTitle: crystal structure of galactose 1-epimerase from lactobacillus2 acidophilus ncfm Phyre2 PDB 1nsz chain A Region: 59 - 191 Aligned: 130 Modelled: 133 Confidence: 96.4% Identity: 13% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 1so0 chain A Region: 59 - 192 Aligned: 125 Modelled: 134 Confidence: 96.4% Identity: 13% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 2cis chain A Region: 53 - 192 Aligned: 129 Modelled: 140 Confidence: 95.7% Identity: 16% PDB header:isomerase Chain: A: PDB Molecule:hexose-6-phosphate mutarotase; PDBTitle: structure-based functional annotation: yeast ymr099c codes2 for a d-hexose-6-phosphate mutarotase. complex with3 tagatose-6-phosphate Phyre2 PDB 3k25 chain B Region: 60 - 191 Aligned: 127 Modelled: 132 Confidence: 94.1% Identity: 10% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1438 protein; PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112 Phyre2 PDB 3bvu chain A domain 2 Region: 39 - 257 Aligned: 185 Modelled: 190 Confidence: 72.7% Identity: 10% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: alpha-mannosidase, C-terminal domain Phyre2 PDB 2yfn chain A Region: 57 - 309 Aligned: 246 Modelled: 253 Confidence: 70.9% Identity: 8% PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask; PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask Phyre2 PDB 3os7 chain D Region: 59 - 309 Aligned: 246 Modelled: 249 Confidence: 69.6% Identity: 13% PDB header:isomerase Chain: D: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution Phyre2 PDB 3os7 chain B Region: 59 - 309 Aligned: 246 Modelled: 245 Confidence: 69.6% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution Phyre2 1 c3blcB_ 2 c3bs6B_ 3 d1z45a1 4 c1ygaA_ 5 c2htbB_ 6 d1lura_ 7 c3dcdA_ 8 c3nreB_ 9 c3q1nA_ 10 c3mwxA_ 11 c1z45A_ 12 c3imhB_ 13 d1nsza_ 14 d1so0a_ 15 c2cisA_ 16 c3k25B_ 17 d3bvua2 18 c2yfnA_ 19 c3os7D_ 20 c3os7B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3blcB_ 100.0 94 PDB header:chaperone,protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc 2 c3bs6B_ 100.0 98 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc 3 d1z45a1 97.7 9 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 4 c1ygaA_ 97.4 12 PDB header:isomerase Chain: A: PDB Molecule:hypothetical 37.9 kda protein in bio3-hxt17 PDBTitle: crystal structure of saccharomyces cerevisiae yn9a protein,2 new york structural genomics consortium 5 c2htbB_ 97.3 8 PDB header:isomerase Chain: B: PDB Molecule:putative enzyme related to aldose 1-epimerase; PDBTitle: crystal structure of a putative mutarotase (yead) from2 salmonella typhimurium in monoclinic form 6 d1lura_ 97.3 13 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 7 c3dcdA_ 97.0 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from2 lactobacillus acidophilus at the resolution 1.9a. northeast3 structural genomics consortium target lar33. 8 c3nreB_ 97.0 13 PDB header:isomerase Chain: B: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative aldose 1-epimerase (b2544) from2 escherichia coli k12 at 1.59 a resolution 9 c3q1nA_ 97.0 21 PDB header:isomerase Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: crystal structure of a galactose mutarotase-like protein (lsei_2598)2 from lactobacillus casei atcc 334 at 1.61 a resolution 10 c3mwxA_ 96.9 13 PDB header:isomerase Chain: A: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative galactose mutarotase (bsu18360) from2 bacillus subtilis at 1.45 a resolution 11 c1z45A_ 96.6 10 PDB header:isomerase Chain: A: PDB Molecule:gal10 bifunctional protein; PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose 12 c3imhB_ 96.5 12 PDB header:isomerase Chain: B: PDB Molecule:galactose-1-epimerase; PDBTitle: crystal structure of galactose 1-epimerase from lactobacillus2 acidophilus ncfm 13 d1nsza_ 96.4 13 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 14 d1so0a_ 96.4 13 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 15 c2cisA_ 95.7 16 PDB header:isomerase Chain: A: PDB Molecule:hexose-6-phosphate mutarotase; PDBTitle: structure-based functional annotation: yeast ymr099c codes2 for a d-hexose-6-phosphate mutarotase. complex with3 tagatose-6-phosphate 16 c3k25B_ 94.1 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1438 protein; PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112 17 d3bvua2 72.7 10 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:alpha-mannosidase, C-terminal domain 18 c2yfnA_ 70.9 8 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask; PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask 19 c3os7D_ 69.6 13 PDB header:isomerase Chain: D: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution 20 c3os7B_ 69.6 13 PDB header:isomerase Chain: B: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution 21 d1jova_ not modelled 66.3 7 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Hypothetical protein HI1317 22 c1o7dD_ not modelled 53.8 16 PDB header:hydrolase Chain: D: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation 23 d1jz8a4 not modelled 52.5 8 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:beta-Galactosidase, domain 5 24 d1x9la_ not modelled 51.7 16 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:DR1885-like metal-binding protein Family:DR1885-like metal-binding protein 25 c3ty1B_ not modelled 50.1 10 PDB header:isomerase Chain: B: PDB Molecule:hypothetical aldose 1-epimerase; PDBTitle: crystal structure of a hypothetical aldose 1-epimerase (kpn_04629)2 from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.90 a3 resolution 26 c3mi6A_ not modelled 46.0 10 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11. 27 c2xn1B_ not modelled 42.6 11 PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase; PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris 28 c3mv14_ not modelled 38.2 6 PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium 29 c1jz6C_ not modelled 31.9 6 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole 30 d1k1xa2 not modelled 26.0 13 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:4-alpha-glucanotransferase, C-terminal domain 31 d1e42a1 not modelled 24.6 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 32 c1z65A_ not modelled 24.1 18 PDB header:unknown function Chain: A: PDB Molecule:prion-like protein doppel; PDBTitle: mouse doppel 1-30 peptide 33 c2rmrA_ not modelled 20.3 15 PDB header:transcription Chain: A: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of msin3a pah1 domain 34 c2ow7A_ not modelled 18.4 11 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase 2; PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride 35 c4a1qB_ not modelled 18.4 36 PDB header:viral protein Chain: B: PDB Molecule:orf e73; PDBTitle: solution structure of e73 protein from sulfolobus spindle-2 shaped virus ragged hills, a hyperthermophilic3 crenarchaeal virus from yellowstone national park 36 d1lvaa3 not modelled 15.7 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 37 c3rgbA_ not modelled 13.7 9 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 38 c1e42A_ not modelled 13.6 17 PDB header:endocytosis Chain: A: PDB Molecule:ap-2 complex subunit beta; PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2 39 c2kmuA_ not modelled 13.0 30 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase q4; PDBTitle: recql4 amino-terminal domain 40 c3r45C_ not modelled 12.5 17 PDB header:nuclear protein Chain: C: PDB Molecule:holliday junction recognition protein; PDBTitle: structure of a cenp-a-histone h4 heterodimer in complex with chaperone2 hjurp 41 c1v7wA_ not modelled 12.1 16 PDB header:transferase Chain: A: PDB Molecule:chitobiose phosphorylase; PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac 42 c1w8xP_ not modelled 11.3 22 PDB header:virus Chain: P: PDB Molecule:protein p16; PDBTitle: structural analysis of prd1 43 c2y69Q_ not modelled 11.1 18 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 44 c2f1eA_ not modelled 10.9 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein 45 d1qbaa2 not modelled 10.3 13 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Bacterial chitobiase, n-terminal domain 46 d1xvsa_ not modelled 10.0 4 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 47 d1xq4a_ not modelled 9.9 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 48 d1v54d_ not modelled 9.2 18 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 49 c1k1yA_ not modelled 9.1 13 PDB header:transferase Chain: A: PDB Molecule:4-alpha-glucanotransferase; PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose 50 c2jo8B_ not modelled 9.0 21 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase 4; PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1) 51 d1v7wa2 not modelled 8.9 17 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Glycosyltransferase family 36 N-terminal domain 52 c2avuF_ not modelled 8.7 21 PDB header:transcription activator Chain: F: PDB Molecule:flagellar transcriptional activator flhc; PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription 53 d2avue1 not modelled 8.7 21 Fold:FlhC-like Superfamily:FlhC-like Family:FlhC-like 54 c3oq9C_ not modelled 8.6 13 PDB header:apoptosis Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6; PDBTitle: structure of the fas/fadd death domain assembly 55 c3hfdA_ not modelled 8.6 19 PDB header:chaperone, protein transport Chain: A: PDB Molecule:nucleosome assembly protein 1; PDBTitle: nucleosome assembly protein 1 from plasmodium knowlesi 56 d2e50a1 not modelled 8.5 16 Fold:NAP-like Superfamily:NAP-like Family:NAP-like 57 d1tzaa_ not modelled 8.3 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 58 d1s5qb_ not modelled 8.2 15 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 59 d2f05a1 not modelled 7.5 18 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 60 d1hn0a3 not modelled 7.4 17 Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain 61 d1g43a_ not modelled 7.2 13 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 62 c2ayuA_ not modelled 6.9 13 PDB header:chaperone Chain: A: PDB Molecule:nucleosome assembly protein; PDBTitle: the structure of nucleosome assembly protein suggests a mechanism for2 histone binding and shuttling 63 d2ayua1 not modelled 6.9 13 Fold:NAP-like Superfamily:NAP-like Family:NAP-like 64 c2rddB_ not modelled 6.9 23 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 65 d1cwva4 not modelled 6.7 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Invasin/intimin cell-adhesion fragments Family:Invasin/intimin cell-adhesion fragments 66 c2kfeA_ not modelled 6.5 22 PDB header:antimicrobial protein Chain: A: PDB Molecule:meucin-24; PDBTitle: solution structure of meucin-24 67 c2do5A_ not modelled 6.4 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:splicing factor 3b subunit 2; PDBTitle: solution structure of the sap domain of human splicing2 factor 3b subunit 2 68 c3fs3A_ not modelled 6.4 19 PDB header:chaperone Chain: A: PDB Molecule:nucleosome assembly protein 1, putative; PDBTitle: crystal structure of malaria parasite nucleosome assembly protein2 (nap) 69 c2jtvA_ not modelled 6.3 50 PDB header:structural genomics Chain: A: PDB Molecule:protein of unknown function; PDBTitle: solution structure of protein rpa3401, northeast structural genomics2 consortium target rpt7, ontario center for structural proteomics3 target rp3384 70 c2of5A_ not modelled 6.2 14 PDB header:apoptosis Chain: A: PDB Molecule:death domain-containing protein cradd; PDBTitle: oligomeric death domain complex 71 d1w1wa_ not modelled 5.9 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 72 c1wsuA_ not modelled 5.7 10 PDB header:translation/rna Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna 73 d1ojra_ not modelled 5.7 35 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 74 c1htyA_ not modelled 5.6 11 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase ii; PDBTitle: golgi alpha-mannosidase ii 75 d1flca2 not modelled 5.6 21 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Esterase domain of haemagglutinin-esterase-fusion glycoprotein HEF1 76 c3obaA_ not modelled 5.5 9 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis 77 c3h9pB_ not modelled 5.5 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative triphosphoribosyl-dephospho-coa synthase; PDBTitle: crystal structure of putative triphosphoribosyl-dephospho-coa synthase2 from archaeoglobus fulgidus 78 d1fada_ not modelled 5.5 12 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 79 c3cazA_ not modelled 5.4 13 PDB header:signaling protein Chain: A: PDB Molecule:bar protein; PDBTitle: crystal structure of a bar protein from galdieria sulphuraria 80 d1ryka_ not modelled 5.1 19 Fold:SAM domain-like Superfamily:Hypothetical protein YjbJ Family:Hypothetical protein YjbJ

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0