Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	S	A	F	D	I	F	K	I	G	I	G	P	S	S	S	H	T	V	G	P	M	N	A	G	K	S	F	I	D	R	L	E	S	S	G	L	L	T	A	T	S	H	I	V	V	D	L	Y	G	S	L	S	L	T	G	K	G	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	T	D	V	A	I	I	M	G	L	A	G	N	S	P	Q	D	V	V	I	D	E	I	P	A	F	I	E	L	V	T	R	S	G	R	L	P	V	A	S	G	A	H	I	V	D	F	P	V	A	K	N	I	I	F	H	P	E	M	L
Secondary structure
SS confidence
Disorder																															?	?								?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	R	H	E	N	G	M	R	I	T	A	W	K	G	Q	E	E	L	L	S	K	T	Y	Y	S	V	G	G	G	F	I	V	E	E	E	H	F	G	L	S	H	D	V	E	T	S	V	P	Y	D	F	H	S	A	G	E	L	L	K	M
Secondary structure
SS confidence
Disorder																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	D	Y	N	G	L	S	I	S	G	L	M	M	H	N	E	L	A	L	R	S	K	A	E	I	D	A	G	F	A	R	I	W	Q	V	M	H	D	G	I	E	R	G	M	N	T	E	G	V	L	P	G	P	L	N	V	P	R	R	A
Secondary structure
SS confidence
Disorder																			?	?	?	?																								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	A	L	R	R	Q	L	V	S	S	D	N	I	S	N	D	P	M	N	V	I	D	W	I	N	M	Y	A	L	A	V	S	E	E	N	A	A	G	G	R	V	V	T	A	P	T	N	G	A	C	G	I	I	P	A	V	L	A	Y	Y
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?	?	?	?																?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	K	F	R	R	P	V	N	E	R	S	I	A	R	Y	F	L	A	A	G	A	I	G	A	L	Y	K	M	N	A	S	I	S	G	A	E	V	G	C	Q	G	E	I	G	V	A	C	S	M	A	A	A	G	L	T	E	L	L	G	G
Secondary structure
SS confidence
Disorder					?			?																					?					?	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		S	P	A	Q	V	C	N	A	A	E	I	A	M	E	H	N	L	G	L	T	C	D	P	V	A	G	Q	V	Q	I	P	C	I	E	R	N	A	I	N	A	V	K	A	V	N	A	A	R	M	A	M	R	R	T	S	A	P	R	V	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Sequence		L	D	K	V	I	E	T	M	Y	E	T	G	K	D	M	N	D	K	Y	R	E	T	S	R	G	G	L	A	I	K	V	V	C	G
Secondary structure
SS confidence
Disorder																																?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2iaf chain A domain 1 Region: 16 - 159 Aligned: 138 Modelled: 144 Confidence: 100.0% Identity: 43% Fold: FwdE/GAPDH domain-like Superfamily: Serine metabolism enzymes domain Family: Serine dehydratase beta chain-like Phyre2 PDB 1ygy chain A Region: 22 - 168 Aligned: 124 Modelled: 124 Confidence: 99.7% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis Phyre2 PDB 1ygy chain A domain 4 Region: 22 - 164 Aligned: 119 Modelled: 120 Confidence: 99.4% Identity: 16% Fold: FwdE/GAPDH domain-like Superfamily: Serine metabolism enzymes domain Family: SerA intervening domain-like Phyre2 PDB 2hp0 chain A Region: 188 - 422 Aligned: 217 Modelled: 235 Confidence: 98.1% Identity: 14% PDB header:isomerase Chain: A: PDB Molecule:ids-epimerase; PDBTitle: crystal structure of iminodisuccinate epimerase Phyre2 PDB 1szq chain A Region: 289 - 423 Aligned: 130 Modelled: 135 Confidence: 97.6% Identity: 15% Fold: 2-methylcitrate dehydratase PrpD Superfamily: 2-methylcitrate dehydratase PrpD Family: 2-methylcitrate dehydratase PrpD Phyre2 PDB 3u4g chain A Region: 348 - 379 Aligned: 32 Modelled: 29 Confidence: 58.6% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase; PDBTitle: the structure of cobt from pyrococcus horikoshii Phyre2 PDB 3s1s chain A Region: 361 - 386 Aligned: 26 Modelled: 26 Confidence: 36.0% Identity: 31% PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi Phyre2 PDB 1ug2 chain A Region: 175 - 223 Aligned: 48 Modelled: 49 Confidence: 34.1% Identity: 23% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Myb/SANT domain Phyre2 PDB 2i7p chain A domain 1 Region: 126 - 183 Aligned: 48 Modelled: 58 Confidence: 31.2% Identity: 29% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Fumble-like Phyre2 PDB 1no5 chain A Region: 46 - 63 Aligned: 18 Modelled: 18 Confidence: 27.2% Identity: 22% Fold: Nucleotidyltransferase Superfamily: Nucleotidyltransferase Family: Catalytic subunit of bi-partite nucleotidyltransferase Phyre2 PDB 2kel chain B Region: 177 - 212 Aligned: 27 Modelled: 36 Confidence: 24.3% Identity: 19% PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 Phyre2 PDB 2rkb chain E Region: 10 - 52 Aligned: 42 Modelled: 43 Confidence: 21.8% Identity: 14% PDB header:lyase Chain: E: PDB Molecule:serine dehydratase-like; PDBTitle: serine dehydratase like-1 from human cancer cells Phyre2 PDB 1kny chain A Region: 11 - 63 Aligned: 50 Modelled: 53 Confidence: 21.7% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:kanamycin nucleotidyltransferase; PDBTitle: kanamycin nucleotidyltransferase Phyre2 PDB 1yy3 chain A Region: 282 - 288 Aligned: 7 Modelled: 7 Confidence: 18.2% Identity: 57% PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) Phyre2 PDB 2rff chain A Region: 23 - 63 Aligned: 37 Modelled: 41 Confidence: 15.6% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:putative nucleotidyltransferase; PDBTitle: crystal structure of a putative nucleotidyltransferase2 (np_343093.1) from sulfolobus solfataricus at 1.40 a3 resolution Phyre2 PDB 1kny chain A domain 2 Region: 11 - 63 Aligned: 50 Modelled: 53 Confidence: 15.5% Identity: 20% Fold: Nucleotidyltransferase Superfamily: Nucleotidyltransferase Family: Kanamycin nucleotidyltransferase (KNTase), N-terminal domain Phyre2 PDB 1jb0 chain L Region: 49 - 71 Aligned: 23 Modelled: 23 Confidence: 14.5% Identity: 35% Fold: Photosystem I reaction center subunit XI, PsaL Superfamily: Photosystem I reaction center subunit XI, PsaL Family: Photosystem I reaction center subunit XI, PsaL Phyre2 PDB 2k9i chain B Region: 175 - 211 Aligned: 28 Modelled: 37 Confidence: 14.3% Identity: 14% PDB header:dna binding protein Chain: B: PDB Molecule:plasmid prn1, complete sequence; PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus Phyre2 PDB 2zfd chain B Region: 418 - 451 Aligned: 34 Modelled: 34 Confidence: 12.6% Identity: 24% PDB header:signaling protein/transferase Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90; PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14 Phyre2 PDB 2k3q chain A Region: 346 - 377 Aligned: 32 Modelled: 32 Confidence: 11.6% Identity: 22% PDB header:structural protein Chain: A: PDB Molecule:tusp1; PDBTitle: solution structure of the n-terminal domain (tusp1-n) of the2 egg case silk from nephila antipodiana Phyre2 1 d2iafa1 2 c1ygyA_ 3 d1ygya4 4 c2hp0A_ 5 d1szqa_ 6 c3u4gA_ 7 c3s1sA_ 8 d1ug2a_ 9 d2i7pa1 10 d1no5a_ 11 c2kelB_ 12 c2rkbE_ 13 c1knyA_ 14 c1yy3A_ 15 c2rffA_ 16 d1knya2 17 d1jb0l_ 18 c2k9iB_ 19 c2zfdB_ 20 c2k3qA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2iafa1 100.0 43 Fold:FwdE/GAPDH domain-like Superfamily:Serine metabolism enzymes domain Family:Serine dehydratase beta chain-like 2 c1ygyA_ 99.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 3 d1ygya4 99.4 16 Fold:FwdE/GAPDH domain-like Superfamily:Serine metabolism enzymes domain Family:SerA intervening domain-like 4 c2hp0A_ 98.1 14 PDB header:isomerase Chain: A: PDB Molecule:ids-epimerase; PDBTitle: crystal structure of iminodisuccinate epimerase 5 d1szqa_ 97.6 15 Fold:2-methylcitrate dehydratase PrpD Superfamily:2-methylcitrate dehydratase PrpD Family:2-methylcitrate dehydratase PrpD 6 c3u4gA_ 58.6 31 PDB header:transferase Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase; PDBTitle: the structure of cobt from pyrococcus horikoshii 7 c3s1sA_ 36.0 31 PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi 8 d1ug2a_ 34.1 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 9 d2i7pa1 31.2 29 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 10 d1no5a_ 27.2 22 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 11 c2kelB_ 24.3 19 PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 12 c2rkbE_ 21.8 14 PDB header:lyase Chain: E: PDB Molecule:serine dehydratase-like; PDBTitle: serine dehydratase like-1 from human cancer cells 13 c1knyA_ 21.7 20 PDB header:transferase Chain: A: PDB Molecule:kanamycin nucleotidyltransferase; PDBTitle: kanamycin nucleotidyltransferase 14 c1yy3A_ 18.2 57 PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) 15 c2rffA_ 15.6 19 PDB header:transferase Chain: A: PDB Molecule:putative nucleotidyltransferase; PDBTitle: crystal structure of a putative nucleotidyltransferase2 (np_343093.1) from sulfolobus solfataricus at 1.40 a3 resolution 16 d1knya2 15.5 20 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Kanamycin nucleotidyltransferase (KNTase), N-terminal domain 17 d1jb0l_ 14.5 35 Fold:Photosystem I reaction center subunit XI, PsaL Superfamily:Photosystem I reaction center subunit XI, PsaL Family:Photosystem I reaction center subunit XI, PsaL 18 c2k9iB_ 14.3 14 PDB header:dna binding protein Chain: B: PDB Molecule:plasmid prn1, complete sequence; PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus 19 c2zfdB_ 12.6 24 PDB header:signaling protein/transferase Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90; PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14 20 c2k3qA_ 11.6 22 PDB header:structural protein Chain: A: PDB Molecule:tusp1; PDBTitle: solution structure of the n-terminal domain (tusp1-n) of the2 egg case silk from nephila antipodiana 21 c2ddhA_ not modelled 11.2 38 PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate 22 d1h72c1 not modelled 11.2 27 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 23 c3lr6A_ not modelled 10.9 33 PDB header:structural protein Chain: A: PDB Molecule:major ampullate spidroin 1; PDBTitle: self-assembly of spider silk proteins is controlled by a ph-sensitive2 relay 24 d1gg2g_ not modelled 10.5 25 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 25 d1ylqa1 not modelled 10.4 28 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 26 c2fonA_ not modelled 10.2 25 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal acyl-coa oxidase 1a; PDBTitle: x-ray crystal structure of leacx1, an acyl-coa oxidase from2 lycopersicon esculentum (tomato) 27 c1u9pA_ not modelled 10.2 17 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 28 c1qoyA_ not modelled 10.1 10 PDB header:toxin Chain: A: PDB Molecule:hemolysin e; PDBTitle: e.coli hemolysin e (hlye, clya, shea) 29 c3mwdA_ not modelled 10.0 31 PDB header:transferase Chain: A: PDB Molecule:atp-citrate synthase; PDBTitle: truncated human atp-citrate lyase with citrate bound 30 c1k97A_ not modelled 10.0 12 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 31 d1k61a_ not modelled 9.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 32 d1b65a_ not modelled 9.4 17 Fold:DmpA/ArgJ-like Superfamily:DmpA/ArgJ-like Family:DmpA-like 33 d1wota_ not modelled 9.3 24 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 34 d1omwg_ not modelled 9.2 25 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 35 c2fgyA_ not modelled 9.0 17 PDB header:lyase Chain: A: PDB Molecule:carboxysome shell polypeptide; PDBTitle: beta carbonic anhydrase from the carboxysomal shell of2 halothiobacillus neapolitanus (csosca) 36 d1j20a1 not modelled 8.8 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 37 d1ee8a1 not modelled 8.8 13 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 38 c1uf2A_ not modelled 8.7 43 PDB header:virus Chain: A: PDB Molecule:core protein p3; PDBTitle: the atomic structure of rice dwarf virus (rdv) 39 d1uf2a_ not modelled 8.7 43 Fold:Reovirus inner layer core protein p3 Superfamily:Reovirus inner layer core protein p3 Family:Phytoreovirus core 40 d1xhmb1 not modelled 8.7 27 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 41 c1xhmB_ not modelled 8.6 27 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein g(i)/g(s) PDBTitle: the crystal structure of a biologically active peptide2 (sigk) bound to a g protein beta:gamma heterodimer 42 d1ncfb3 not modelled 8.6 40 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 43 c3ibqA_ not modelled 8.6 30 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 44 d1gotg_ not modelled 8.5 8 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 45 d1rypa_ not modelled 8.3 7 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 46 c2w4eA_ not modelled 8.3 23 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 47 d1w32a_ not modelled 8.2 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 48 d1fi6a_ not modelled 8.0 20 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 49 c2crnA_ not modelled 8.0 16 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 50 d1tbge_ not modelled 7.9 8 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 51 d1ng7a_ not modelled 7.9 27 Fold:Soluble domain of poliovirus core protein 3a Superfamily:Soluble domain of poliovirus core protein 3a Family:Soluble domain of poliovirus core protein 3a 52 c2dagA_ not modelled 7.8 12 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 53 d1n93x_ not modelled 7.8 24 Fold:P40 nucleoprotein Superfamily:P40 nucleoprotein Family:P40 nucleoprotein 54 c1n93X_ not modelled 7.8 24 PDB header:viral protein Chain: X: PDB Molecule:p40 nucleoprotein; PDBTitle: crystal structure of the borna disease virus nucleoprotein 55 c1kh2D_ not modelled 7.6 15 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 56 d1h0ha2 not modelled 7.5 23 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3 57 d1x2na1 not modelled 7.5 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 58 c1w07A_ not modelled 7.4 31 PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: arabidopsis thaliana acyl-coa oxidase 1 59 d1k47a1 not modelled 7.4 25 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 60 d2i7na2 not modelled 7.1 31 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 61 c3a24A_ not modelled 7.1 8 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of bt1871 retaining glycosidase 62 d2raqa1 not modelled 7.1 11 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 63 c2iifA_ not modelled 7.1 14 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 64 c2x3dC_ not modelled 7.0 16 PDB header:unknown function Chain: C: PDB Molecule:sso6206; PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2 65 d1fh9a_ not modelled 6.9 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 66 c3iz5w_ not modelled 6.9 40 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 67 c3l0zC_ not modelled 6.7 13 PDB header:transferase Chain: C: PDB Molecule:putative nicotinate-nucleotide-dimethylbenzimidazole PDBTitle: crystal structure of a putative nicotinate-nucleotide-2 dimethylbenzimidazole phosphoribosyltransferase from3 methanocaldococcus jannaschii dsm 2661 68 c3noyA_ not modelled 6.6 42 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: crystal structure of ispg (gcpe) 69 c2gefA_ not modelled 6.4 50 PDB header:hydrolase Chain: A: PDB Molecule:protease vp4; PDBTitle: crystal structure of a novel viral protease with a2 serine/lysine catalytic dyad mechanism 70 d2r5yb1 not modelled 6.4 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 71 c1p5jA_ not modelled 6.3 19 PDB header:lyase Chain: A: PDB Molecule:l-serine dehydratase; PDBTitle: crystal structure analysis of human serine dehydratase 72 d1p5ja_ not modelled 6.3 19 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 73 c2jyaA_ not modelled 6.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1810; PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776 74 d1j6ua3 not modelled 6.3 33 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 75 d1r85a_ not modelled 6.2 23 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 76 d1w85i_ not modelled 6.2 22 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 77 d1yrnb_ not modelled 6.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 78 c2jugB_ not modelled 6.2 33 PDB header:biosynthetic protein Chain: B: PDB Molecule:tubc protein; PDBTitle: multienzyme docking in hybrid megasynthetases 79 c3sz8D_ not modelled 6.2 10 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 80 c2wscL_ not modelled 6.2 24 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem i reaction center subunit xi, PDBTitle: improved model of plant photosystem i 81 d1exta3 not modelled 6.2 40 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 82 c2i7pA_ not modelled 6.1 31 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 3; PDBTitle: crystal structure of human pank3 in complex with accoa 83 c2f5xC_ not modelled 6.1 20 PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd 84 c2y8sE_ not modelled 6.1 63 PDB header:membrane protein Chain: E: PDB Molecule:rhoptry neck protein 2; PDBTitle: co-structure of an ama1 mutant (y230a) with a surface2 exposed region of ron2 from toxoplasma gondii 85 c2cooA_ not modelled 6.0 11 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase 86 c2iirJ_ not modelled 6.0 12 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 87 d1lxna_ not modelled 5.9 24 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 88 c3no9C_ not modelled 5.9 14 PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase class ii; PDBTitle: crystal structure of apo fumarate hydratase from mycobacterium2 tuberculosis 89 c2lk2A_ not modelled 5.9 17 PDB header:transcription Chain: A: PDB Molecule:homeobox protein tgif1; PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b 90 d1huua_ not modelled 5.8 16 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 91 c2w1oA_ not modelled 5.8 25 PDB header:translation Chain: A: PDB Molecule:60s acidic ribosomal protein p2; PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2 92 c3ugsB_ not modelled 5.7 18 PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni 93 d2sici_ not modelled 5.7 63 Fold:Subtilisin inhibitor Superfamily:Subtilisin inhibitor Family:Subtilisin inhibitor 94 d1pwha_ not modelled 5.6 20 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 95 d2nrha1 not modelled 5.6 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 96 d1pvla_ not modelled 5.6 18 Fold:Leukocidin-like Superfamily:Leukocidin-like Family:Leukocidin (pore-forming toxin) 97 d2gkea2 not modelled 5.5 23 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Diaminopimelate epimerase 98 c1p4eB_ not modelled 5.5 33 PDB header:dna binding protein/recombination/dna Chain: B: PDB Molecule:recombinase flp protein; PDBTitle: flpe w330f mutant-dna holliday junction complex 99 c3beyC_ not modelled 5.5 20 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:conserved protein o27018; PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0