Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	C	E	E	L	E	I	V	W	N	N	I	K	A	E	A	R	T	L	A	D	C	E	P	M	L	A	S	F	Y	H	A	T	L	L	K	H	E	N	L	G	S	A	L	S	Y	M	L	A	N	K	L	S	S	P	I	M	P	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																															?																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	A	I	R	E	V	V	E	E	A	Y	A	A	D	P	E	M	I	A	S	A	A	C	D	I	Q	A	V	R	T	R	D	P	A	V	D	K	Y	S	T	P	L	L	Y	L	K	G	F	H	A	L	Q	A	Y	R	I	G	H	W	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		W	N	Q	G	R	R	A	L	A	I	F	L	Q	N	Q	V	S	V	T	F	Q	V	D	I	H	P	A	A	K	I	G	R	G	I	M	L	D	H	A	T	G	I	V	V	G	E	T	A	V	I	E	N	D	V	S	I	L	Q	S	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	L	G	G	T	G	K	S	G	G	D	R	H	P	K	I	R	E	G	V	M	I	G	A	G	A	K	I	L	G	N	I	E	V	G	R	G	A	K	I	G	A	G	S	V	V	L	Q	P	V	P	P	H	T	T	A	A	G	V	P
Secondary structure
SS confidence
Disorder						?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Sequence		A	R	I	V	G	K	P	D	S	D	K	P	S	M	D	M	D	Q	H	F	N	G	I	N	H	T	F	E	Y	G	D	G	I
Secondary structure
SS confidence
Disorder							?		?	?	?	?	?	?		?												?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1t3d chain A Region: 1 - 260 Aligned: 260 Modelled: 259 Confidence: 100.0% Identity: 97% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: Serine acetyltransferase Phyre2 PDB 1t3d chain B Region: 1 - 260 Aligned: 260 Modelled: 259 Confidence: 100.0% Identity: 97% PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a Phyre2 PDB 3mc4 chain A Region: 4 - 248 Aligned: 239 Modelled: 245 Confidence: 100.0% Identity: 54% PDB header:transferase Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis Phyre2 PDB 1ssq chain A Region: 8 - 245 Aligned: 238 Modelled: 238 Confidence: 100.0% Identity: 75% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: Serine acetyltransferase Phyre2 PDB 3f1x chain A Region: 41 - 242 Aligned: 195 Modelled: 202 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62. Phyre2 PDB 3q1x chain A Region: 60 - 236 Aligned: 177 Modelled: 177 Confidence: 100.0% Identity: 37% PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of entamoeba histolytica serine acetyltransferase 12 in complex with l-serine Phyre2 PDB 1ocx chain A Region: 95 - 247 Aligned: 146 Modelled: 153 Confidence: 99.9% Identity: 19% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: Galactoside acetyltransferase-like Phyre2 PDB 3ect chain A Region: 85 - 249 Aligned: 152 Modelled: 165 Confidence: 99.9% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:hexapeptide-repeat containing-acetyltransferase; PDBTitle: crystal structure of the hexapeptide-repeat containing-2 acetyltransferase vca0836 from vibrio cholerae Phyre2 PDB 2ic7 chain A Region: 102 - 248 Aligned: 145 Modelled: 147 Confidence: 99.9% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:maltose transacetylase; PDBTitle: crystal structure of maltose transacetylase from2 geobacillus kaustophilus Phyre2 PDB 1krr chain A Region: 140 - 252 Aligned: 113 Modelled: 113 Confidence: 99.9% Identity: 30% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: Galactoside acetyltransferase-like Phyre2 PDB 3tdt chain A Region: 79 - 244 Aligned: 164 Modelled: 166 Confidence: 99.9% Identity: 20% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD Phyre2 PDB 3r0s chain A Region: 141 - 271 Aligned: 129 Modelled: 131 Confidence: 99.9% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni Phyre2 PDB 3i3a chain C Region: 142 - 272 Aligned: 129 Modelled: 131 Confidence: 99.9% Identity: 25% PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa Phyre2 PDB 3srt chain B Region: 141 - 249 Aligned: 109 Modelled: 109 Confidence: 99.9% Identity: 26% PDB header:transferase Chain: B: PDB Molecule:maltose o-acetyltransferase; PDBTitle: the crystal structure of a maltose o-acetyltransferase from2 clostridium difficile 630 Phyre2 PDB 3ftt chain A Region: 140 - 250 Aligned: 111 Modelled: 111 Confidence: 99.9% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase sacol2570; PDBTitle: crystal structure of the galactoside o-acetyltransferase2 from staphylococcus aureus Phyre2 PDB 1mr7 chain A Region: 142 - 271 Aligned: 125 Modelled: 130 Confidence: 99.9% Identity: 24% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: Galactoside acetyltransferase-like Phyre2 PDB 1j2z chain A Region: 141 - 271 Aligned: 129 Modelled: 131 Confidence: 99.9% Identity: 33% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: UDP N-acetylglucosamine acyltransferase Phyre2 PDB 1xat chain A Region: 144 - 270 Aligned: 122 Modelled: 127 Confidence: 99.9% Identity: 26% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: Galactoside acetyltransferase-like Phyre2 PDB 2jf2 chain A domain 1 Region: 141 - 270 Aligned: 128 Modelled: 130 Confidence: 99.9% Identity: 27% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: UDP N-acetylglucosamine acyltransferase Phyre2 PDB 3bsw chain A domain 1 Region: 92 - 244 Aligned: 144 Modelled: 153 Confidence: 99.9% Identity: 21% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: PglD-like Phyre2 1 d1t3da_ 2 c1t3dB_ 3 c3mc4A_ 4 d1ssqa_ 5 c3f1xA_ 6 c3q1xA_ 7 d1ocxa_ 8 c3ectA_ 9 c2ic7A_ 10 d1krra_ 11 d3tdta_ 12 c3r0sA_ 13 c3i3aC_ 14 c3srtB_ 15 c3fttA_ 16 d1mr7a_ 17 d1j2za_ 18 d1xata_ 19 d2jf2a1 20 d3bswa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1t3da_ 100.0 97 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 2 c1t3dB_ 100.0 97 PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a 3 c3mc4A_ 100.0 54 PDB header:transferase Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis 4 d1ssqa_ 100.0 75 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 5 c3f1xA_ 100.0 29 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62. 6 c3q1xA_ 100.0 37 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of entamoeba histolytica serine acetyltransferase 12 in complex with l-serine 7 d1ocxa_ 99.9 19 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 8 c3ectA_ 99.9 22 PDB header:transferase Chain: A: PDB Molecule:hexapeptide-repeat containing-acetyltransferase; PDBTitle: crystal structure of the hexapeptide-repeat containing-2 acetyltransferase vca0836 from vibrio cholerae 9 c2ic7A_ 99.9 19 PDB header:transferase Chain: A: PDB Molecule:maltose transacetylase; PDBTitle: crystal structure of maltose transacetylase from2 geobacillus kaustophilus 10 d1krra_ 99.9 30 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 11 d3tdta_ 99.9 20 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD 12 c3r0sA_ 99.9 26 PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni 13 c3i3aC_ 99.9 25 PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa 14 c3srtB_ 99.9 26 PDB header:transferase Chain: B: PDB Molecule:maltose o-acetyltransferase; PDBTitle: the crystal structure of a maltose o-acetyltransferase from2 clostridium difficile 630 15 c3fttA_ 99.9 23 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase sacol2570; PDBTitle: crystal structure of the galactoside o-acetyltransferase2 from staphylococcus aureus 16 d1mr7a_ 99.9 24 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 17 d1j2za_ 99.9 33 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 18 d1xata_ 99.9 26 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 19 d2jf2a1 99.9 27 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 20 d3bswa1 99.9 21 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:PglD-like 21 c3jqyB_ not modelled 99.9 30 PDB header:transferase Chain: B: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo 22 c3cj8B_ not modelled 99.9 34 PDB header:transferase Chain: B: PDB Molecule:2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-2 succinyltransferase from enterococcus faecalis v583 23 c2iu9C_ not modelled 99.9 23 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) 24 c3fsbB_ not modelled 99.9 27 PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose 25 c3eevC_ not modelled 99.8 22 PDB header:transferase Chain: C: PDB Molecule:chloramphenicol acetyltransferase; PDBTitle: crystal structure of chloramphenicol acetyltransferase vca0300 from2 vibrio cholerae o1 biovar eltor 26 c3pmoA_ not modelled 99.8 16 PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution 27 c3mqhD_ not modelled 99.8 34 PDB header:transferase Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase; PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid 28 c3eg4A_ not modelled 99.8 20 PDB header:transferase Chain: A: PDB Molecule:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase from brucella melitensis3 biovar abortus 2308 29 d1g97a1 not modelled 99.8 19 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 30 c3eh0C_ not modelled 99.8 22 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli 31 c2wlgA_ not modelled 99.8 19 PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy 32 c1hm8A_ not modelled 99.8 19 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a 33 d2oi6a1 not modelled 99.7 21 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 34 d1v3wa_ not modelled 99.7 26 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 35 c2oi6A_ not modelled 99.7 19 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4 36 c2v0hA_ not modelled 99.7 23 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu) 37 c3ixcA_ not modelled 99.7 18 PDB header:transferase Chain: A: PDB Molecule:hexapeptide transferase family protein; PDBTitle: crystal structure of hexapeptide transferase family protein from2 anaplasma phagocytophilum 38 c3r3rA_ not modelled 99.7 21 PDB header:transferase Chain: A: PDB Molecule:ferripyochelin binding protein; PDBTitle: structure of the yrda ferripyochelin binding protein from salmonella2 enterica 39 d1xhda_ not modelled 99.7 26 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 40 c3fsyC_ not modelled 99.6 20 PDB header:transferase Chain: C: PDB Molecule:tetrahydrodipicolinate n-succinyltransferase; PDBTitle: structure of tetrahydrodipicolinate n-succinyltransferase2 (rv1201c;dapd) in complex with succinyl-coa from mycobacterium3 tuberculosis 41 c3r1wA_ not modelled 99.6 24 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of a carbonic anhydrase from a crude oil degrading2 psychrophilic library 42 c2ggqA_ not modelled 99.5 20 PDB header:transferase Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii 43 c3c8vA_ not modelled 99.5 13 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution 44 c2rijA_ not modelled 99.3 15 PDB header:transferase Chain: A: PDB Molecule:putative 2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter3 jejuni at 1.90 a resolution 45 c1qreA_ not modelled 99.2 12 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: a closer look at the active site of gamma-carbonic anhydrases: high2 resolution crystallographic studies of the carbonic anhydrase from3 methanosarcina thermophila 46 d1qrea_ not modelled 99.2 12 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 47 d2f9ca1 not modelled 99.0 17 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:YdcK-like 48 c2qkxA_ not modelled 98.8 16 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate 49 d1fxja1 not modelled 98.8 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 50 c3kwdA_ not modelled 98.8 22 PDB header:lyase, protein binding, photosynthesis Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein; PDBTitle: inactive truncation of the beta-carboxysomal gamma-carbonic anhydrase,2 ccmm, form 1 51 d1yp2a1 not modelled 98.8 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 52 c1yp3C_ not modelled 98.7 16 PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp 53 c3d98A_ not modelled 98.7 16 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form 54 c3brkX_ not modelled 98.6 21 PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens 55 c1fwyA_ not modelled 98.5 11 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac 56 d2icya1 not modelled 19.4 26 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 57 d1o57a2 not modelled 18.4 20 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 58 c1b0nB_ not modelled 17.0 31 PDB header:transcription regulator Chain: B: PDB Molecule:protein (sini protein); PDBTitle: sinr protein/sini protein complex 59 d1b0nb_ not modelled 17.0 31 Fold:Dimerisation interlock Superfamily:SinR repressor dimerisation domain-like Family:SinR repressor dimerisation domain-like 60 c2ioaA_ not modelled 15.7 13 PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor 61 c3qxyA_ not modelled 15.4 25 PDB header:transferase Chain: A: PDB Molecule:n-lysine methyltransferase setd6; PDBTitle: human setd6 in complex with rela lys310 62 c3oqvA_ not modelled 13.5 13 PDB header:protein binding Chain: A: PDB Molecule:albc; PDBTitle: albc, a cyclodipeptide synthase from streptomyces noursei 63 d2ivxa2 not modelled 9.0 19 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 64 c3smtA_ not modelled 9.0 11 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd3; PDBTitle: crystal structure of human set domain-containing protein3 65 c3bitA_ not modelled 8.7 14 PDB header:transcription Chain: A: PDB Molecule:fact complex subunit spt16; PDBTitle: crystal structure of yeast spt16 n-terminal domain 66 c2vjjA_ not modelled 8.5 11 PDB header:viral protein Chain: A: PDB Molecule:tailspike protein; PDBTitle: tailspike protein of e.coli bacteriophage hk620 in complex2 with hexasaccharide 67 c2d7cD_ not modelled 8.5 11 PDB header:protein transport Chain: D: PDB Molecule:rab11 family-interacting protein 3; PDBTitle: crystal structure of human rab11 in complex with fip3 rab-2 binding domain 68 c3gt2A_ not modelled 8.1 15 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 69 d3blhb1 not modelled 7.8 18 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 70 c2hv8D_ not modelled 7.7 19 PDB header:protein transport Chain: D: PDB Molecule:rab11 family-interacting protein 3; PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3 71 c2z9fC_ not modelled 7.5 21 PDB header:biosynthetic protein Chain: C: PDB Molecule:cellulose synthase operon protein d; PDBTitle: crystal structure of axcesd protein from acetobacter xylinum 72 c2zkrq_ not modelled 6.9 19 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 73 c3oo2A_ not modelled 6.6 15 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col 74 c2zuuA_ not modelled 6.5 8 PDB header:transferase Chain: A: PDB Molecule:lacto-n-biose phosphorylase; PDBTitle: crystal structure of galacto-n-biose/lacto-n-biose i phosphorylase in2 complex with glcnac 75 d1ex4a1 not modelled 6.4 27 Fold:SH3-like barrel Superfamily:DNA-binding domain of retroviral integrase Family:DNA-binding domain of retroviral integrase 76 c4a1aP_ not modelled 6.2 16 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 77 d1ihwa_ not modelled 5.9 27 Fold:SH3-like barrel Superfamily:DNA-binding domain of retroviral integrase Family:DNA-binding domain of retroviral integrase 78 c3iz5U_ not modelled 5.8 19 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 79 c3izcU_ not modelled 5.8 16 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 80 d1hska2 not modelled 5.8 22 Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 81 c2x9qA_ not modelled 5.6 15 PDB header:ligase Chain: A: PDB Molecule:cyclodipeptide synthetase; PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases. 82 d1uxya2 not modelled 5.3 26 Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 83 c2cu2A_ not modelled 5.3 21 PDB header:transferase Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase; PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8 84 d1ugpa_ not modelled 5.3 16 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 85 c3qwvA_ not modelled 5.3 25 PDB header:transferase Chain: A: PDB Molecule:set and mynd domain-containing protein 2; PDBTitle: crystal structure of histone lysine methyltransferase smyd2 in complex2 with the cofactor product adohcy 86 d2g46a1 not modelled 5.2 8 Fold:beta-clip Superfamily:SET domain Family:Viral histone H3 Lysine 27 Methyltransferase 87 d2z1ca1 not modelled 5.2 13 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 88 c1ds5F_ not modelled 5.2 33 PDB header:transferase Chain: F: PDB Molecule:casein kinase, beta chain; PDBTitle: dimeric crystal structure of the alpha subunit in complex2 with two beta peptides mimicking the architecture of the3 tetrameric protein kinase ck2 holoenzyme. 89 d2ar0a1 not modelled 5.1 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N-6 DNA Methylase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0