Email l.a.kelley@imperial.ac.uk Description P0A7Z4 Date Thu Jan 5 11:06:30 GMT 2012 Unique Job ID 595f62cbbe4922c2

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1bdfC_ 100.0 99 PDB header:nucleotidyltransferase Chain: C: PDB Molecule:rna polymerase alpha subunit; PDBTitle: structure of escherichia coli rna polymerase alpha subunit2 n-terminal domain 2 c3iydB_ 100.0 100 PDB header:transcription/dna Chain: B: PDB Molecule:dna-directed rna polymerase subunit alpha; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex 3 c1smyB_ 100.0 46 PDB header:transferase Chain: B: PDB Molecule:dna-directed rna polymerase alpha chain; PDBTitle: structural basis for transcription regulation by alarmone2 ppgpp 4 c1i6hC_ 100.0 18 PDB header:transcription/dna-rna hybrid Chain: C: PDB Molecule:dna-directed rna polymerase ii 45kd polypeptide; PDBTitle: rna polymerase ii elongation complex 5 c3howC_ 100.0 18 PDB header:transcription,transferase/dna/rna hybrid Chain: C: PDB Molecule:dna-directed rna polymerase ii subunit rpb3; PDBTitle: complete rna polymerase ii elongation complex iii with a t-u2 mismatch and a frayed rna 3'-uridine 6 c2pmzS_ 100.0 20 PDB header:translation, transferase Chain: S: PDB Molecule:dna-directed rna polymerase subunit d; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 7 c3h0gO_ 100.0 24 PDB header:transcription Chain: O: PDB Molecule:dna-directed rna polymerase ii subunit rpb3; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 8 d1bdfa2 100.0 100 Fold:Insert subdomain of RNA polymerase alpha subunit Superfamily:Insert subdomain of RNA polymerase alpha subunit Family:Insert subdomain of RNA polymerase alpha subunit 9 d1smya2 100.0 45 Fold:Insert subdomain of RNA polymerase alpha subunit Superfamily:Insert subdomain of RNA polymerase alpha subunit Family:Insert subdomain of RNA polymerase alpha subunit 10 d1ynja2 100.0 46 Fold:Insert subdomain of RNA polymerase alpha subunit Superfamily:Insert subdomain of RNA polymerase alpha subunit Family:Insert subdomain of RNA polymerase alpha subunit 11 d1bdfa1 100.0 99 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 12 d1ynja1 100.0 52 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 13 d1cooa_ 99.9 100 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 14 d1smya1 99.9 56 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 15 d1lb2b_ 99.9 100 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 16 d1z3eb1 99.8 41 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 17 d1doqa_ 99.8 33 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 18 d1twfc2 99.7 18 Fold:Insert subdomain of RNA polymerase alpha subunit Superfamily:Insert subdomain of RNA polymerase alpha subunit Family:Insert subdomain of RNA polymerase alpha subunit 19 d1twfc1 99.3 17 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 20 d1szpa1 97.2 14 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 21 c1b22A_ not modelled 96.9 14 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 22 d1b22a_ not modelled 96.9 14 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 23 d1xppa_ not modelled 95.8 13 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RBP11/RpoL 24 c2pmzL_ not modelled 95.7 23 PDB header:translation, transferase Chain: L: PDB Molecule:dna-directed rna polymerase subunit l; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 25 d1twfk_ not modelled 95.4 28 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RBP11/RpoL 26 d1szpb1 not modelled 95.4 12 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 27 d1pzna1 not modelled 94.9 10 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 28 d2i1qa1 not modelled 94.3 12 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 29 c3h0gK_ not modelled 94.3 24 PDB header:transcription Chain: K: PDB Molecule:dna-directed rna polymerase ii subunit rpb11; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 30 c3ldaA_ not modelled 93.5 15 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: yeast rad51 h352y filament interface mutant 31 d1dgsa1 not modelled 93.2 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 32 c1t4gA_ not modelled 92.9 15 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: atpase in complex with amp-pnp 33 c2dflA_ not modelled 92.5 13 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: crystal structure of left-handed rada filament 34 c2owoA_ not modelled 91.6 20 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 35 c1dgsB_ not modelled 88.7 18 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 36 c1szpC_ not modelled 86.5 12 PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein rad51; PDBTitle: a crystal structure of the rad51 filament 37 d2q0zx1 not modelled 86.3 8 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Sec63 N-terminal domain 38 d2bgwa1 not modelled 85.2 20 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 39 c1v9pB_ not modelled 85.2 23 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 40 d2a1jb1 not modelled 85.2 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 41 c1t3nB_ not modelled 85.1 24 PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp 42 c1kftA_ not modelled 81.8 21 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 43 d1kfta_ not modelled 81.8 21 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 44 d1k1sa2 not modelled 80.6 19 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 45 d1zeta2 not modelled 78.3 25 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 46 c1k1qA_ not modelled 76.3 19 PDB header:transcription Chain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus 47 c3gqcB_ not modelled 75.7 22 PDB header:transferase/dna Chain: B: PDB Molecule:dna repair protein rev1; PDBTitle: structure of human rev1-dna-dntp ternary complex 48 c2va8A_ not modelled 75.6 21 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 49 d1jx4a2 not modelled 75.2 17 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 50 c2bhnD_ not modelled 74.6 25 PDB header:hydrolase Chain: D: PDB Molecule:xpf endonuclease; PDBTitle: xpf from aeropyrum pernix 51 d1x2ia1 not modelled 74.2 21 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 52 c2kp7A_ not modelled 74.2 15 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a 53 d1u9la_ not modelled 72.5 17 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:NusA extra C-terminal domains 54 c3im2A_ not modelled 71.6 13 PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing helicase brr2; PDBTitle: structure of the c-terminal sec63 unit of yeast brr2, p41212 form 55 d1cuka2 not modelled 67.9 25 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 56 c2fllA_ not modelled 65.9 24 PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp 57 c1ixrA_ not modelled 64.9 16 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 58 d1gm5a2 not modelled 63.8 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 59 c1s97D_ not modelled 63.0 20 PDB header:transferase/dna Chain: D: PDB Molecule:dna polymerase iv; PDBTitle: dpo4 with gt mismatch 60 d1ixra1 not modelled 61.8 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 61 c2w9mB_ not modelled 60.5 20 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 62 c1d8lA_ not modelled 56.6 25 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 63 c1wcnA_ not modelled 53.3 16 PDB header:rna-binding protein Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: nmr structure of the carboxyterminal domains of escherichia2 coli nusa 64 d1kkha2 not modelled 51.4 25 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate kinase 65 d1feua_ not modelled 49.3 21 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like 66 d2edua1 not modelled 49.1 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 67 c2kz3A_ not modelled 49.1 28 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein rad51l3; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83 68 d1t94a2 not modelled 47.1 19 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 69 c2rrdA_ not modelled 43.7 16 PDB header:dna binding protein Chain: A: PDB Molecule:hrdc domain from bloom syndrome protein; PDBTitle: structure of hrdc domain from human bloom syndrome protein, blm 70 d1k47a2 not modelled 42.8 14 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Phosphomevalonate kinase (PMK) 71 d2j3wb1 not modelled 42.7 26 Fold:Ligand-binding domain in the NO signalling and Golgi transport Superfamily:Ligand-binding domain in the NO signalling and Golgi transport Family:TRAPP components 72 c1s5lu_ not modelled 41.7 15 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 73 d1im4a_ not modelled 41.3 16 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 74 c3bqsB_ not modelled 40.5 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 listeria monocytogenes, trigonal form 75 c1t94B_ not modelled 40.2 19 PDB header:replication Chain: B: PDB Molecule:polymerase (dna directed) kappa; PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa 76 d1bvsa2 not modelled 38.2 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 77 d1s4ea2 not modelled 37.2 17 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase 78 d2axtu1 not modelled 35.6 15 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 79 d1piea2 not modelled 35.6 16 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase 80 c2q0zX_ not modelled 35.3 8 PDB header:protein transport Chain: X: PDB Molecule:protein pro2281; PDBTitle: crystal structure of q9p172/sec63 from homo sapiens.2 northeast structural genomics target hr1979. 81 c2aq4A_ not modelled 34.3 24 PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp. 82 c3mr2A_ not modelled 33.9 28 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) 83 c2b0tA_ not modelled 33.7 24 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp isocitrate dehydrogenase; PDBTitle: structure of monomeric nadp isocitrate dehydrogenase 84 d2p6ra2 not modelled 33.4 17 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 85 c1hjpA_ not modelled 32.8 17 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 86 d1wuua2 not modelled 32.6 16 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase 87 d1itwa_ not modelled 32.5 22 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Monomeric isocitrate dehydrogenase 88 d2aq0a1 not modelled 32.2 15 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 89 d1wc9a_ not modelled 30.9 24 Fold:Ligand-binding domain in the NO signalling and Golgi transport Superfamily:Ligand-binding domain in the NO signalling and Golgi transport Family:TRAPP components 90 c1wuuA_ not modelled 30.8 16 PDB header:transferase Chain: A: PDB Molecule:galactokinase; PDBTitle: crystal structure of human galactokinase complexed with2 mgamppnp and galactose 91 d1pyya2 not modelled 29.3 8 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 92 d1k25a2 not modelled 28.9 8 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 93 d1wuda1 not modelled 28.9 11 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 94 d1jmsa1 not modelled 28.7 19 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 95 c2hfuB_ not modelled 27.8 17 PDB header:transferase Chain: B: PDB Molecule:mevalonate kinase, putative; PDBTitle: crystal structure of l. major mevalonate kinase in complex2 with r-mevalonate 96 c2h5xA_ not modelled 25.1 16 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 97 c2a2cA_ not modelled 24.8 14 PDB header:transferase Chain: A: PDB Molecule:n-acetylgalactosamine kinase; PDBTitle: x-ray structure of human n-acetyl galactosamine kinase2 complexed with mg-adp and n-acetyl galactosamine 1-3 phosphate 98 d1rp5a2 not modelled 24.4 8 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 99 d2zjrs1 not modelled 23.8 20 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like 100 d1s7za_ not modelled 23.7 25 Fold:Another 3-helical bundle Superfamily:B-form DNA mimic Ocr Family:B-form DNA mimic Ocr 101 c1k47F_ not modelled 22.7 12 PDB header:transferase Chain: F: PDB Molecule:phosphomevalonate kinase; PDBTitle: crystal structure of the streptococcus pneumoniae2 phosphomevalonate kinase (pmk) 102 c3c1zA_ not modelled 22.7 18 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein 103 d2duya1 not modelled 22.3 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 104 d2bcqa1 not modelled 21.8 25 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 105 d1coka_ not modelled 20.3 20 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain