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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3howC_

Fold library idPDB HeaderMoleculeTitle
c3howC_PDB header: transcription,transferase/dna/rna hybridChain: C: PDB Molecule: dna-directed rna polymerase ii subunit rpb3;PDBTitle: complete rna polymerase ii elongation complex iii with a t-u2 mismatch and a frayed rna 3'-uridine


Added to library: Sun Aug 29 07:05:27 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPL
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Known secondary structure (DSSP)

SSB



S

SSBS

S





S
SSS
S
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence QSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGV
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Known secondary structure (DSSP)

SSGGGS

GGGS
SSS

TTT


SSS
GGG

S

SSSS


B



SSS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDP
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Known secondary structure (DSSP)
SS



TTT
STT








TTT
S






SS
S


GGGTTS

 .........220.........230.........240.........250.........260......
Sequence PNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD
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Known secondary structure (DSSP)

SSS


TT






SSS
TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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