Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1i6hC_

Fold library idPDB HeaderMoleculeTitle
c1i6hC_PDB header: transcription/dna-rna hybridChain: C: PDB Molecule: dna-directed rna polymerase ii 45kd polypeptide;PDBTitle: rna polymerase ii elongation complex


Added to library: Tue Mar 16 12:31:47 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPL
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)

S



SSS

SS
TS

SSS
S
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence QSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGV
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)

GGGGGS

TTTSSSSS

TTT

SSS
GGG

S

TT




B



SSS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDP
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP)
TT

TTT
GGG
S






SSTTS






SS
S


GGGGGS

 .........220.........230.........240.........250.........260......
Sequence PNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD
Predicted secondary structure















SS confidence























































Known secondary structure (DSSP)

TT




S







SSS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D