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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3iydB_

Fold library idPDB HeaderMoleculeTitle
c3iydB_PDB header: transcription/dnaChain: B: PDB Molecule: dna-directed rna polymerase subunit alpha;PDBTitle: three-dimensional em structure of an intact activator-2 dependent transcription initiation complex


Added to library: Sat Aug 28 21:21:24 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYST
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Known secondary structure (DSSP)

S



S







SSSS





TTTTTTTTSS





BTT


SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASI
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Known secondary structure (DSSP)
TT
SS
TGGGSS


SS
S



SSS


STTS


SS
S
TT






SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence SMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGT
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Known secondary structure (DSSP)
B



SS
TTTS

SS
SSSTTT





SS




B

SS
SSB




SS
 .........220.........230.....
Sequence IDPEEAIRRAATILAEQLEAFVDLR
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Known secondary structure (DSSP) S
TT




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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