Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	L	N	M	F	W	F	L	P	T	H	G	D	G	H	Y	L	G	T	E	E	G	S	R	P	V	D	H	G	Y	L	Q	Q	I	A	Q	A	A	D	R	L	G	Y	T	G	V	L	I	P	T	G	R	S	C	E	D	A	W	L
Secondary structure
SS confidence
Disorder		?	?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	A	A	S	M	I	P	V	T	Q	R	L	K	F	L	V	A	L	R	P	S	V	T	S	P	T	V	A	A	R	Q	A	A	T	L	D	R	L	S	N	G	R	A	L	F	N	L	V	T	G	S	D	P	Q	E	L	A	G	D	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	F	L	D	H	S	E	R	Y	E	A	S	A	E	F	T	Q	V	W	R	R	L	L	Q	R	E	T	V	D	F	N	G	K	H	I	H	V	R	G	A	K	L	L	F	P	A	I	Q	Q	P	Y	P	P	L	Y	F	G	G	S	S
Secondary structure
SS confidence
Disorder																																												?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	V	A	Q	E	L	A	A	E	Q	V	D	L	Y	L	T	W	G	E	P	P	E	L	V	K	E	K	I	E	Q	V	R	A	K	A	A	A	H	G	R	K	I	R	F	G	I	R	L	H	V	I	V	R	E	T	N	D	E	A	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	A	A	E	R	L	I	S	H	L	D	D	E	T	I	A	K	A	Q	A	A	F	A	R	T	D	S	V	G	Q	Q	R	M	A	A	L	H	N	G	K	R	D	N	L	E	I	S	P	N	L	W	A	G	V	G	L	V	R	G	G
Secondary structure
SS confidence
Disorder																							?	?		?	?	?	?	?	?	?		?																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	G	T	A	L	V	G	D	G	P	T	V	A	A	R	I	N	E	Y	A	A	L	G	I	D	S	F	V	L	S	G	Y	P	H	L	E	E	A	Y	R	V	G	E	L	L	F	P	L	L	D	V	A	I	P	E	I	P	Q	P	Q
Secondary structure
SS confidence
Disorder																																																							?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Sequence		P	L	N	P	Q	G	E	A	V	A	N	D	F	I	P	R	K	V	A	Q	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?		?	?	?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nqk chain A Region: 1 - 362 Aligned: 345 Modelled: 345 Confidence: 100.0% Identity: 98% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Ssud-like monoxygenases Phyre2 PDB 3rao chain B Region: 2 - 356 Aligned: 335 Modelled: 336 Confidence: 100.0% Identity: 29% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987. Phyre2 PDB 3sdo chain B Region: 2 - 374 Aligned: 350 Modelled: 351 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase; PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei Phyre2 PDB 3b9n chain B Region: 2 - 380 Aligned: 372 Modelled: 378 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) Phyre2 PDB 1tvl chain A Region: 2 - 375 Aligned: 346 Modelled: 349 Confidence: 100.0% Identity: 23% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Ssud-like monoxygenases Phyre2 PDB 1tvl chain A Region: 2 - 375 Aligned: 346 Modelled: 349 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis Phyre2 PDB 1ezw chain A Region: 2 - 350 Aligned: 326 Modelled: 335 Confidence: 100.0% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: F420 dependent oxidoreductases Phyre2 PDB 1luc chain A Region: 3 - 351 Aligned: 307 Modelled: 315 Confidence: 100.0% Identity: 20% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Bacterial luciferase (alkanal monooxygenase) Phyre2 PDB 1z69 chain D Region: 3 - 348 Aligned: 320 Modelled: 332 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)- PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420 Phyre2 PDB 2wgk chain A Region: 2 - 350 Aligned: 329 Modelled: 335 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase; PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida Phyre2 PDB 1luc chain B Region: 3 - 346 Aligned: 303 Modelled: 305 Confidence: 100.0% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Bacterial luciferase (alkanal monooxygenase) Phyre2 PDB 1rhc chain A Region: 1 - 351 Aligned: 314 Modelled: 316 Confidence: 100.0% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: F420 dependent oxidoreductases Phyre2 PDB 2i7g chain A Region: 2 - 354 Aligned: 324 Modelled: 326 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:monooxygenase; PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens Phyre2 PDB 1f07 chain A Region: 3 - 349 Aligned: 314 Modelled: 333 Confidence: 100.0% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: F420 dependent oxidoreductases Phyre2 PDB 3c8n chain B Region: 3 - 351 Aligned: 312 Modelled: 314 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis Phyre2 PDB 2b81 chain D Region: 3 - 351 Aligned: 279 Modelled: 289 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: D: PDB Molecule:luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus Phyre2 PDB 1nfp chain A Region: 121 - 352 Aligned: 195 Modelled: 206 Confidence: 99.9% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Non-fluorescent flavoprotein (luxF, FP390) Phyre2 PDB 1fvp chain A Region: 171 - 346 Aligned: 142 Modelled: 149 Confidence: 99.3% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Non-fluorescent flavoprotein (luxF, FP390) Phyre2 PDB 1mum chain A Region: 310 - 345 Aligned: 36 Modelled: 36 Confidence: 91.5% Identity: 11% Fold: TIM beta/alpha-barrel Superfamily: Phosphoenolpyruvate/pyruvate domain Family: Phosphoenolpyruvate mutase/Isocitrate lyase-like Phyre2 PDB 1zlp chain A Region: 310 - 345 Aligned: 36 Modelled: 36 Confidence: 91.4% Identity: 19% PDB header:lyase Chain: A: PDB Molecule:petal death protein; PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct Phyre2 1 d1nqka_ 2 c3raoB_ 3 c3sdoB_ 4 c3b9nB_ 5 d1tvla_ 6 c1tvlA_ 7 d1ezwa_ 8 d1luca_ 9 c1z69D_ 10 c2wgkA_ 11 d1lucb_ 12 d1rhca_ 13 c2i7gA_ 14 d1f07a_ 15 c3c8nB_ 16 c2b81D_ 17 d1nfpa_ 18 d1fvpa_ 19 d1muma_ 20 c1zlpA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nqka_ 100.0 98 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Ssud-like monoxygenases 2 c3raoB_ 100.0 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987. 3 c3sdoB_ 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase; PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei 4 c3b9nB_ 100.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) 5 d1tvla_ 100.0 23 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Ssud-like monoxygenases 6 c1tvlA_ 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis 7 d1ezwa_ 100.0 18 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:F420 dependent oxidoreductases 8 d1luca_ 100.0 20 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 9 c1z69D_ 100.0 20 PDB header:oxidoreductase Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)- PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420 10 c2wgkA_ 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase; PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida 11 d1lucb_ 100.0 16 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 12 d1rhca_ 100.0 18 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:F420 dependent oxidoreductases 13 c2i7gA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:monooxygenase; PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens 14 d1f07a_ 100.0 18 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:F420 dependent oxidoreductases 15 c3c8nB_ 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis 16 c2b81D_ 100.0 21 PDB header:oxidoreductase Chain: D: PDB Molecule:luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus 17 d1nfpa_ 99.9 16 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Non-fluorescent flavoprotein (luxF, FP390) 18 d1fvpa_ 99.3 18 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Non-fluorescent flavoprotein (luxF, FP390) 19 d1muma_ 91.5 11 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 20 c1zlpA_ 91.4 19 PDB header:lyase Chain: A: PDB Molecule:petal death protein; PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct 21 c3fa4D_ not modelled 91.3 28 PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form 22 c3eooL_ not modelled 91.2 19 PDB header:lyase Chain: L: PDB Molecule:methylisocitrate lyase; PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei 23 c3lyeA_ not modelled 91.0 24 PDB header:hydrolase Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase; PDBTitle: crystal structure of oxaloacetate acetylhydrolase 24 d1ujqa_ not modelled 90.9 17 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 25 c2ze3A_ not modelled 89.9 17 PDB header:isomerase Chain: A: PDB Molecule:dfa0005; PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus 26 c3b8iF_ not modelled 89.8 25 PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+. 27 c2qiwA_ not modelled 89.5 19 PDB header:transferase Chain: A: PDB Molecule:pep phosphonomutase; PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution 28 c3ih1A_ not modelled 89.4 19 PDB header:lyase Chain: A: PDB Molecule:methylisocitrate lyase; PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis 29 d1s2wa_ not modelled 83.1 11 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 30 c2hjpA_ not modelled 78.9 14 PDB header:hydrolase Chain: A: PDB Molecule:phosphonopyruvate hydrolase; PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++ 31 c1rcxH_ not modelled 65.0 13 PDB header:lyase (carbon-carbon) Chain: H: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase; PDBTitle: non-activated spinach rubisco in complex with its substrate2 ribulose-1,5-bisphosphate 32 d2d69a1 not modelled 59.5 13 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 33 d1jpdx1 not modelled 57.7 12 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 34 c1ydnA_ not modelled 55.7 17 PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35. 35 c3qy6A_ not modelled 54.3 17 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe; PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases 36 d1jpma1 not modelled 52.4 16 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 37 d2fiqa1 not modelled 50.4 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:GatZ-like 38 c3bg5C_ not modelled 50.0 14 PDB header:ligase Chain: C: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of staphylococcus aureus pyruvate2 carboxylase 39 c2ftpA_ not modelled 48.5 17 PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa 40 c3ivuB_ not modelled 46.5 17 PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og 41 c2cw6B_ not modelled 40.9 9 PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria 42 d1ej7l1 not modelled 40.6 13 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 43 c3ez4B_ not modelled 40.1 16 PDB header:transferase Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase; PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei 44 c1rr2A_ not modelled 38.2 7 PDB header:transferase Chain: A: PDB Molecule:transcarboxylase 5s subunit; PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid 45 d1tzza1 not modelled 35.8 17 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 46 c3cixA_ not modelled 35.5 11 PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate 47 c1ydoC_ not modelled 35.2 9 PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181. 48 d7reqb2 not modelled 33.6 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 49 d2gl5a1 not modelled 33.2 14 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 50 d1m3ua_ not modelled 33.0 12 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 51 c3bleA_ not modelled 32.8 7 PDB header:transferase Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans; PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate 52 c3pueA_ not modelled 32.6 12 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 53 c2wjeA_ not modelled 31.0 10 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb; PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4. 54 c2nx9B_ not modelled 30.0 9 PDB header:lyase Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha; PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae 55 c3e02A_ not modelled 29.8 14 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849; PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution 56 d1nvma2 not modelled 29.5 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:HMGL-like 57 d1xxxa1 not modelled 29.4 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 58 d2noca1 not modelled 29.3 22 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 59 d1r3sa_ not modelled 29.1 7 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 60 c1jpkA_ not modelled 29.0 7 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase 61 c1zfjA_ not modelled 28.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes 62 d1uoka2 not modelled 28.8 30 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 63 d1m53a2 not modelled 28.1 22 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 64 c1rldB_ not modelled 27.8 12 PDB header:lyase(carbon-carbon) Chain: B: PDB Molecule:ribulose 1,5 bisphosphate carboxylase/oxygenase (large PDBTitle: solid-state phase transition in the crystal structure of ribulose 1,5-2 biphosphate carboxylase(slash)oxygenase 65 d1o5ka_ not modelled 27.6 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 66 d1j93a_ not modelled 27.5 22 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 67 d8ruca1 not modelled 27.5 13 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 68 c2d69B_ not modelled 27.0 13 PDB header:lyase Chain: B: PDB Molecule:ribulose bisphosphate carboxylase; PDBTitle: crystal structure of the complex of sulfate ion and octameric2 ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from3 pyrococcus horikoshii ot3 (form-2 crystal) 69 d1ht6a2 not modelled 25.8 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 70 d1bxna1 not modelled 25.6 13 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 71 c2ejaB_ not modelled 24.5 12 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus 72 d1geha1 not modelled 24.4 10 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 73 d1lwha2 not modelled 24.1 30 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 74 d1wdda1 not modelled 24.1 13 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 75 c1bf2A_ not modelled 22.8 15 PDB header:hydrolase Chain: A: PDB Molecule:isoamylase; PDBTitle: structure of pseudomonas isoamylase 76 d1gxha_ not modelled 22.7 33 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 77 d1igwa_ not modelled 22.3 24 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 78 d2a6na1 not modelled 21.8 9 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 79 c2hl2A_ not modelled 21.2 17 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase from pyrococcus abyssi in complex with an3 analog of seryladenylate 80 c2ekcA_ not modelled 21.2 18 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 81 d1g5aa2 not modelled 21.1 23 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 82 d1rbla1 not modelled 21.0 9 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 83 c3noeA_ not modelled 20.9 18 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa 84 c1nvmG_ not modelled 20.4 12 PDB header:lyase/oxidoreductase Chain: G: PDB Molecule:4-hydroxy-2-oxovalerate aldolase; PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate 85 c3lerA_ not modelled 20.3 13 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168 86 c2infB_ not modelled 19.9 12 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 bacillus subtilis 87 d1jdfa1 not modelled 19.8 23 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 88 d1yeya1 not modelled 19.7 18 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 89 c3cyvA_ not modelled 19.4 15 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism 90 c3c6cA_ not modelled 19.3 10 PDB header:hydrolase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution 91 c2ze0A_ not modelled 19.2 19 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: alpha-glucosidase gsj 92 d1oyaa_ not modelled 19.1 24 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 93 c3eegB_ not modelled 19.0 18 PDB header:transferase Chain: B: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of a 2-isopropylmalate synthase from2 cytophaga hutchinsonii 94 c3chvA_ not modelled 18.8 10 PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution 95 d2gjpa2 not modelled 18.4 8 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 96 c2y7eA_ not modelled 18.2 12 PDB header:lyase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form) 97 d1ua7a2 not modelled 17.8 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 98 c3ewbX_ not modelled 17.5 18 PDB header:transferase Chain: X: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of n-terminal domain of putative 2-2 isopropylmalate synthase from listeria monocytogenes 99 d1vjia_ not modelled 16.9 24 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0