Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	T	E	Q	Q	R	A	V	T	R	L	C	I	Q	C	G	L	F	L	L	Q	H	G	A	E	S	A	L	V	D	E	L	S	S	R	L	G	R	A	L	G	M	D	S	V	E	S	S	I	S	S	N	A	I	V	L	T	T	I
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	D	G	Q	C	L	T	S	T	R	K	N	H	D	R	G	I	N	M	H	V	V	T	E	V	Q	H	I	V	I	L	A	E	H	H	L	L	D	Y	K	G	V	E	K	R	F	S	Q	I	Q	P	L	R	Y	P	R	W	L	V	A
Secondary structure
SS confidence
Disorder													?		?																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	M	V	G	L	S	C	A	C	F	C	K	L	N	N	G	G	W	D	G	A	V	I	T	F	F	A	S	T	T	A	M	Y	I	R	Q	L	L	A	Q	R	H	L	H	P	Q	I	N	F	C	L	T	A	F	A	A	T	T	I	S
Secondary structure
SS confidence
Disorder																																										?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	L	L	L	Q	L	P	T	F	S	N	T	P	T	I	A	M	A	A	S	V	L	L	L	V	P	G	F	P	L	I	N	A	V	A	D	M	F	K	G	H	I	N	T	G	L	A	R	W	A	I	A	S	L	L	T	L	A	T	C
Secondary structure
SS confidence
Disorder																																								?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Sequence		V	G	V	V	M	A	L	T	I	W	G	L	R	G	W	V
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jvd chain A Region: 80 - 105 Aligned: 26 Modelled: 26 Confidence: 49.2% Identity: 4% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: solution nmr structure of the folded n-terminal fragment of2 upf0291 protein ynzc from bacillus subtilis. northeast3 structural genomics target sr384-1-46 Phyre2 PDB 3bhp chain A Region: 80 - 105 Aligned: 26 Modelled: 26 Confidence: 47.2% Identity: 4% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: crystal structure of upf0291 protein ynzc from bacillus2 subtilis at resolution 2.0 a. northeast structural3 genomics consortium target sr384 Phyre2 PDB 1vp7 chain A Region: 80 - 108 Aligned: 29 Modelled: 29 Confidence: 45.7% Identity: 14% Fold: Spectrin repeat-like Superfamily: XseB-like Family: XseB-like Phyre2 PDB 2y0s chain J Region: 78 - 108 Aligned: 31 Modelled: 31 Confidence: 43.6% Identity: 10% PDB header:transferase Chain: J: PDB Molecule:rna polymerase subunit 13; PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in2 p21 space group Phyre2 PDB 2y0s chain Q Region: 78 - 108 Aligned: 31 Modelled: 31 Confidence: 43.6% Identity: 10% PDB header:transferase Chain: Q: PDB Molecule:rna polymerase subunit 13; PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in2 p21 space group Phyre2 PDB 2hep chain A Region: 80 - 105 Aligned: 26 Modelled: 26 Confidence: 42.6% Identity: 4% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: solution nmr structure of the upf0291 protein ynzc from2 bacillus subtilis. northeast structural genomics target3 sr384. Phyre2 PDB 2hep chain A domain 1 Region: 80 - 105 Aligned: 26 Modelled: 26 Confidence: 42.6% Identity: 4% Fold: Long alpha-hairpin Superfamily: YnzC-like Family: YznC-like Phyre2 PDB 2pp4 chain A domain 1 Region: 83 - 121 Aligned: 39 Modelled: 39 Confidence: 40.4% Identity: 13% Fold: TAFH domain-like Superfamily: TAFH domain-like Family: TAFH domain-like Phyre2 PDB 1vp7 chain B Region: 80 - 108 Aligned: 29 Modelled: 29 Confidence: 37.3% Identity: 14% Fold: Spectrin repeat-like Superfamily: XseB-like Family: XseB-like Phyre2 PDB 3hkz chain Y Region: 78 - 112 Aligned: 35 Modelled: 35 Confidence: 33.0% Identity: 9% PDB header:transferase Chain: Y: PDB Molecule:dna-directed rna polymerase subunit 13; PDBTitle: the x-ray crystal structure of rna polymerase from archaea Phyre2 PDB 1w53 chain A Region: 80 - 113 Aligned: 34 Modelled: 34 Confidence: 31.7% Identity: 12% Fold: KaiA/RbsU domain Superfamily: KaiA/RbsU domain Family: Phosphoserine phosphatase RsbU, N-terminal domain Phyre2 PDB 1vd6 chain A domain 1 Region: 24 - 108 Aligned: 73 Modelled: 84 Confidence: 31.4% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: PLC-like phosphodiesterases Family: Glycerophosphoryl diester phosphodiesterase Phyre2 PDB 1qd1 chain A domain 2 Region: 25 - 50 Aligned: 26 Modelled: 26 Confidence: 31.4% Identity: 23% Fold: Ferredoxin-like Superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family: Formiminotransferase domain of formiminotransferase-cyclodeaminase. Phyre2 PDB 1o1z chain A Region: 24 - 108 Aligned: 79 Modelled: 85 Confidence: 29.0% Identity: 14% Fold: TIM beta/alpha-barrel Superfamily: PLC-like phosphodiesterases Family: Glycerophosphoryl diester phosphodiesterase Phyre2 PDB 3hkz chain Z Region: 78 - 112 Aligned: 35 Modelled: 35 Confidence: 27.6% Identity: 9% PDB header:transferase Chain: Z: PDB Molecule:dna-directed rna polymerase subunit 13; PDBTitle: the x-ray crystal structure of rna polymerase from archaea Phyre2 PDB 3szt chain B Region: 3 - 45 Aligned: 43 Modelled: 43 Confidence: 27.0% Identity: 14% PDB header:transcription Chain: B: PDB Molecule:quorum-sensing control repressor; PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone Phyre2 PDB 1wo8 chain A domain 1 Region: 2 - 114 Aligned: 111 Modelled: 113 Confidence: 26.7% Identity: 12% Fold: Methylglyoxal synthase-like Superfamily: Methylglyoxal synthase-like Family: Methylglyoxal synthase, MgsA Phyre2 PDB 1tlq chain A Region: 73 - 186 Aligned: 114 Modelled: 113 Confidence: 25.7% Identity: 15% Fold: YutG-like Superfamily: YutG-like Family: YutG-like Phyre2 PDB 1tlq chain A Region: 73 - 186 Aligned: 114 Modelled: 113 Confidence: 25.7% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ypjq; PDBTitle: crystal structure of protein ypjq from bacillus subtilis, pfam duf64 Phyre2 PDB 1ml8 chain A Region: 135 - 164 Aligned: 30 Modelled: 30 Confidence: 24.4% Identity: 10% Fold: OsmC-like Superfamily: OsmC-like Family: YhfA-like Phyre2 1 c2jvdA_ 2 c3bhpA_ 3 d1vp7a_ 4 c2y0sJ_ 5 c2y0sQ_ 6 c2hepA_ 7 d2hepa1 8 d2pp4a1 9 d1vp7b_ 10 c3hkzY_ 11 d1w53a_ 12 d1vd6a1 13 d1qd1a2 14 d1o1za_ 15 c3hkzZ_ 16 c3sztB_ 17 d1wo8a1 18 d1tlqa_ 19 c1tlqA_ 20 d1ml8a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jvdA_ 49.2 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: solution nmr structure of the folded n-terminal fragment of2 upf0291 protein ynzc from bacillus subtilis. northeast3 structural genomics target sr384-1-46 2 c3bhpA_ 47.2 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: crystal structure of upf0291 protein ynzc from bacillus2 subtilis at resolution 2.0 a. northeast structural3 genomics consortium target sr384 3 d1vp7a_ 45.7 14 Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like 4 c2y0sJ_ 43.6 10 PDB header:transferase Chain: J: PDB Molecule:rna polymerase subunit 13; PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in2 p21 space group 5 c2y0sQ_ 43.6 10 PDB header:transferase Chain: Q: PDB Molecule:rna polymerase subunit 13; PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in2 p21 space group 6 c2hepA_ 42.6 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: solution nmr structure of the upf0291 protein ynzc from2 bacillus subtilis. northeast structural genomics target3 sr384. 7 d2hepa1 42.6 4 Fold:Long alpha-hairpin Superfamily:YnzC-like Family:YznC-like 8 d2pp4a1 40.4 13 Fold:TAFH domain-like Superfamily:TAFH domain-like Family:TAFH domain-like 9 d1vp7b_ 37.3 14 Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like 10 c3hkzY_ 33.0 9 PDB header:transferase Chain: Y: PDB Molecule:dna-directed rna polymerase subunit 13; PDBTitle: the x-ray crystal structure of rna polymerase from archaea 11 d1w53a_ 31.7 12 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Phosphoserine phosphatase RsbU, N-terminal domain 12 d1vd6a1 31.4 16 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Glycerophosphoryl diester phosphodiesterase 13 d1qd1a2 31.4 23 Fold:Ferredoxin-like Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase. 14 d1o1za_ 29.0 14 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Glycerophosphoryl diester phosphodiesterase 15 c3hkzZ_ 27.6 9 PDB header:transferase Chain: Z: PDB Molecule:dna-directed rna polymerase subunit 13; PDBTitle: the x-ray crystal structure of rna polymerase from archaea 16 c3sztB_ 27.0 14 PDB header:transcription Chain: B: PDB Molecule:quorum-sensing control repressor; PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone 17 d1wo8a1 26.7 12 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 18 d1tlqa_ 25.7 15 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 19 c1tlqA_ 25.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ypjq; PDBTitle: crystal structure of protein ypjq from bacillus subtilis, pfam duf64 20 d1ml8a_ 24.4 10 Fold:OsmC-like Superfamily:OsmC-like Family:YhfA-like 21 c2yvxD_ not modelled 24.0 9 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 22 c2ql8A_ not modelled 23.6 3 PDB header:oxidoreductase Chain: A: PDB Molecule:putative redox protein; PDBTitle: crystal structure of a putative redox protein (lsei_0423) from2 lactobacillus casei atcc 334 at 1.50 a resolution 23 c2wb1Q_ not modelled 23.1 8 PDB header:transcription Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase 24 c2bjoA_ not modelled 22.1 3 PDB header:oxidoreductase Chain: A: PDB Molecule:organic hydroperoxide resistance protein ohrb; PDBTitle: crystal structure of the organic hydroperoxide resistance2 protein ohrb of bacillus subtilis 25 c2wb1J_ not modelled 21.9 8 PDB header:transcription Chain: J: PDB Molecule:dna-directed rna polymerase rpo13 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase 26 c2waqQ_ not modelled 20.9 6 PDB header:transcription Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase 27 c3cjeA_ not modelled 20.8 10 PDB header:oxidoreductase Chain: A: PDB Molecule:osmc-like protein; PDBTitle: crystal structure of an osmc-like hydroperoxide resistance protein2 (jann_2040) from jannaschia sp. ccs1 at 1.70 a resolution 28 d1lqla_ not modelled 20.1 10 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 29 c1lqlE_ not modelled 20.1 10 PDB header:unknown function Chain: E: PDB Molecule:osmotical inducible protein c like family; PDBTitle: crystal structure of osmc like protein from mycoplasma2 pneumoniae 30 d1uspa_ not modelled 18.2 3 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 31 c2egtA_ not modelled 18.0 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein aq_1549; PDBTitle: crystal structure of hypothetical protein (aq1549) from aquifex2 aeolicus 32 d1n2fa_ not modelled 16.9 7 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 33 d1q8la_ not modelled 16.7 8 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 34 c3eerA_ not modelled 16.5 7 PDB header:oxidoreductase Chain: A: PDB Molecule:organic hydroperoxide resistance protein, putative; PDBTitle: high resolution structure of putative organic hydroperoxide resistance2 protein from vibrio cholerae o1 biovar eltor str. n16961 35 d1qwia_ not modelled 16.2 7 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 36 d2pn2a1 not modelled 16.2 13 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 37 d1vlaa_ not modelled 15.4 13 Fold:OsmC-like Superfamily:OsmC-like Family:YhfA-like 38 d2p6va1 not modelled 15.2 15 Fold:TAFH domain-like Superfamily:TAFH domain-like Family:TAFH domain-like 39 c2i88A_ not modelled 15.2 14 PDB header:membrane protein Chain: A: PDB Molecule:colicin-e1; PDBTitle: crystal structure of the channel-forming domain of colicin2 e1 40 c2j6yB_ not modelled 14.3 8 PDB header:hydrolase Chain: B: PDB Molecule:phosphoserine phosphatase rsbu; PDBTitle: structural and functional characterisation of partner2 switching regulating the environmental stress response in3 bacillus subtilis 41 d1jt6a2 not modelled 14.1 7 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 42 c2bezC_ not modelled 14.1 11 PDB header:viral protein Chain: C: PDB Molecule:e2 glycoprotein; PDBTitle: structure of a proteolitically resistant core from the2 severe acute respiratory syndrome coronavirus s2 fusion3 protein 43 c1ciiA_ not modelled 13.6 15 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 44 d1nyed_ not modelled 12.8 10 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 45 c2qdqA_ not modelled 11.1 9 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure of the talin dimerisation domain 46 d2opla1 not modelled 10.7 7 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 47 c3ks6A_ not modelled 10.4 10 PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterase (17743486) from agrobacterium tumefaciens3 str. c58 (dupont) at 1.80 a resolution 48 d1whra_ not modelled 10.3 11 Fold:IF3-like Superfamily:R3H domain Family:R3H domain 49 c2kkhA_ not modelled 10.3 10 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 50 c3no5C_ not modelled 9.7 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf849 domain containing protein2 (reut_a1631) from ralstonia eutropha jmp134 at 1.90 a resolution 51 d2oa4a1 not modelled 9.4 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:SPO1678-like 52 c3b47A_ not modelled 9.4 15 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0582 53 c3hd7A_ not modelled 9.4 5 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 54 d2o38a1 not modelled 9.3 28 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 55 c2o38A_ not modelled 9.3 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: putative xre family transcriptional regulator 56 c2fxpA_ not modelled 9.2 9 PDB header:viral protein Chain: A: PDB Molecule:spike glycoprotein; PDBTitle: solution structure of the sars-coronavirus hr2 domain 57 d2jf2a1 not modelled 9.1 13 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 58 c3i10A_ not modelled 9.0 14 PDB header:hydrolase Chain: A: PDB Molecule:putative glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterase (np_812074.1) from bacteroides thetaiotaomicron3 vpi-5482 at 1.35 a resolution 59 c3c6cA_ not modelled 9.0 7 PDB header:hydrolase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution 60 c2jrtA_ not modelled 8.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5 61 d2v4jb2 not modelled 8.8 12 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 62 d1xmba2 not modelled 8.7 12 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 63 c2pz0B_ not modelled 8.7 13 PDB header:hydrolase Chain: B: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of glycerophosphodiester phosphodiesterase (gdpd)2 from t. tengcongensis 64 c2y7eA_ not modelled 8.7 13 PDB header:lyase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form) 65 c3lotC_ not modelled 8.4 17 PDB header:structure genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution 66 c3qvqB_ not modelled 8.3 14 PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase olei02445; PDBTitle: the structure of an oleispira antarctica phosphodiesterase olei024452 in complex with the product sn-glycerol-3-phosphate 67 c2otdC_ not modelled 8.2 13 PDB header:hydrolase Chain: C: PDB Molecule:glycerophosphodiester phosphodiesterase; PDBTitle: the crystal structure of the glycerophosphodiester phosphodiesterase2 from shigella flexneri 2a 68 c2kyzA_ not modelled 7.7 19 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 69 c3e02A_ not modelled 7.4 10 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849; PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution 70 c1y3kA_ not modelled 7.3 10 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 71 d1x4pa1 not modelled 7.3 20 Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain) 72 c3r1fO_ not modelled 7.1 13 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 73 c1yg0A_ not modelled 7.0 8 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 74 c3e49A_ not modelled 7.0 6 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849 with a tim barrel fold; PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb4003 at 1.75 a resolution 75 c2uwjF_ not modelled 6.9 23 PDB header:chaperone Chain: F: PDB Molecule:type iii export protein pscf; PDBTitle: structure of the heterotrimeric complex which regulates2 type iii secretion needle formation 76 c1wyyB_ not modelled 6.9 11 PDB header:viral protein Chain: B: PDB Molecule:e2 glycoprotein; PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein 77 d1iiba_ not modelled 6.8 9 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 78 d2ieaa3 not modelled 6.7 21 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 79 c3ipdB_ not modelled 6.7 10 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 80 d1otsa_ not modelled 6.6 11 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 81 d1kpla_ not modelled 6.6 13 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 82 c3chvA_ not modelled 6.5 7 PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution 83 c2lkyA_ not modelled 6.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b 84 c2l2qA_ not modelled 6.4 3 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 85 c2v4iA_ not modelled 6.4 28 PDB header:transferase Chain: A: PDB Molecule:glutamate n-acetyltransferase 2 alpha chain; PDBTitle: structure of a novel n-acyl-enzyme intermediate of an n-2 terminal nucleophile (ntn) hydrolase, oat2 86 c2ofhX_ not modelled 6.2 10 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 87 d1osda_ not modelled 6.1 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 88 d2axta1 not modelled 6.1 20 Fold:Bacterial photosystem II reaction centre, L and M subunits Superfamily:Bacterial photosystem II reaction centre, L and M subunits Family:Bacterial photosystem II reaction centre, L and M subunits 89 c3ck4K_ not modelled 6.0 14 PDB header:protein binding Chain: K: PDB Molecule:gcn4 leucine zipper; PDBTitle: a heterospecific leucine zipper tetramer 90 d1cpza_ not modelled 5.9 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 91 c3cqbB_ not modelled 5.8 14 PDB header:hydrolase Chain: B: PDB Molecule:probable protease htpx homolog; PDBTitle: crystal structure of heat shock protein htpx domain from vibrio2 parahaemolyticus rimd 2210633 92 d2ofya1 not modelled 5.7 13 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 93 c2b2hA_ not modelled 5.7 8 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) 94 d1e0ga_ not modelled 5.7 15 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 95 d1mwza_ not modelled 5.7 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 96 c1qd1A_ not modelled 5.6 22 PDB header:transferase Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase; PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase. 97 c3a1yF_ not modelled 5.6 24 PDB header:ribosomal protein Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p); PDBTitle: the structure of protein complex 98 c1yjrA_ not modelled 5.5 5 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 99 c1izlJ_ not modelled 5.5 20 PDB header:photosynthesis Chain: J: PDB Molecule:photosystem ii: subunit psba; PDBTitle: crystal structure of photosystem ii

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0