PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2otdC_

Fold library id	PDB Header	Molecule	Title
c2otdC_	PDB header: hydrolase	Chain: C: PDB Molecule: glycerophosphodiester phosphodiesterase;	PDBTitle: the crystal structure of the glycerophosphodiester2 phosphodiesterase from shigella flexneri 2a

Links to external resources
Added to library: Tue Mar 16 14:05:36 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S N W P Y P R I V A H R G G G K L A P E N T L A A I D V G A K Y G H K X I E F D A K L S K D G E I F L L H D D N L E R T S N G W G V A G E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T T T S S
S S S T T
S
T T
S S S B S G G G S S
S B G G G S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N W Q D L L R V D A G S W Y S K A F K G E P L P L L S Q V A E R C R E H G X X A N I E I K P T T G T G P L T G K X V A L A A R Q L W A G X T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S T T T
T T
T T
B T
T T
T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P P L L S S F E I D A L E A A Q Q A A P E L P R G L L L D E W R D D W R E L T A R L G C V S I H L N H K L L D K A R V X Q L K D A G L R I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
S S
T T T
S G G G
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . .

Sequence V Y T V N K P Q H A A E L L R W G V D C I C T D A I D V I G P N F T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
T T T S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	N	W	P	Y	P	R	I	V	A	H	R	G	G	G	K	L	A	P	E	N	T	L	A	A	I	D	V	G	A	K	Y	G	H	K	X	I	E	F	D	A	K	L	S	K	D	G	E	I	F	L	L	H	D	D	N	L	E	R	T	S	N	G	W	G	V	A	G	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S				T	T	T	T	T	T	S	S		S	S	S										T	T		S										T	T							S	S	S	B	S	G	G	G	S	S			S	B	G	G	G	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	W	Q	D	L	L	R	V	D	A	G	S	W	Y	S	K	A	F	K	G	E	P	L	P	L	L	S	Q	V	A	E	R	C	R	E	H	G	X	X	A	N	I	E	I	K	P	T	T	G	T	G	P	L	T	G	K	X	V	A	L	A	A	R	Q	L	W	A	G	X	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T			S	S	T	T	T		T	T		T	T					B												T											T	T																	T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	P	L	L	S	S	F	E	I	D	A	L	E	A	A	Q	Q	A	A	P	E	L	P	R	G	L	L	L	D	E	W	R	D	D	W	R	E	L	T	A	R	L	G	C	V	S	I	H	L	N	H	K	L	L	D	K	A	R	V	X	Q	L	K	D	A	G	L	R	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S													T	T	S							S	S			T	T									T		S						G	G	G												T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Sequence	V	Y	T	V	N	K	P	Q	H	A	A	E	L	L	R	W	G	V	D	C	I	C	T	D	A	I	D	V	I	G	P	N	F	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T							S		T	T	T	S		T	T