Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0ACI0
DateThu Jan 5 11:18:14 GMT 2012
Unique Job ID54134c721ef7ce61

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1d5yD_
Top template information
PDB header:transcription/dna
Chain: D: PDB Molecule:rob transcription factor;
PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna
Confidence and coverage
Confidence:100.0% Coverage: 98%
283 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS
Secondary structure 













SS confidence 



























































Disorder  ??

























































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   .........70.........80.........90.........100.........110.........120
Sequence  KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL
Secondary structure 


























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Disorder 







??

































?
????????



?
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   .........130.........140.........150.........160.........170.........180
Sequence  GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG
Secondary structure 
















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Disorder 
?

























































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   .........190.........200.........210.........220.........230.........240
Sequence  LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI
Secondary structure 

























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Disorder 
























??????
??

























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   .........250.........260.........270.........280.........
Sequence  LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR
Secondary structure 

























SS confidence 
















































Disorder 



























???
?













??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1d5y chain D

3D model

Region: 3 - 289
Aligned: 283
Modelled: 287
Confidence: 100.0%
Identity: 100%
PDB header:transcription/dna
Chain: D: PDB Molecule:rob transcription factor;
PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna

Phyre2

PDB 1d5y chain A domain 3

3D model

Region: 122 - 289
Aligned: 164
Modelled: 168
Confidence: 100.0%
Identity: 100%
Fold: Probable bacterial effector-binding domain
Superfamily: Probable bacterial effector-binding domain
Family: Rob transcription factor, C-terminal domain

Phyre2

PDB 3gbg chain A

3D model

Region: 2 - 105
Aligned: 103
Modelled: 104
Confidence: 99.9%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:tcp pilus virulence regulatory protein;
PDBTitle: crystal structure of toxt from vibrio cholerae o395

Phyre2

PDB 3lur chain B

3D model

Region: 126 - 288
Aligned: 151
Modelled: 162
Confidence: 99.9%
Identity: 18%
PDB header:transcription activator
Chain: B: PDB Molecule:putative bacterial transcription regulation protein;
PDBTitle: crystal structure of putative bacterial transcription regulation2 protein (np_372959.1) from staphylococcus aureus mu50 at 1.81 a3 resolution

Phyre2

PDB 1bl0 chain A

3D model

Region: 4 - 118
Aligned: 115
Modelled: 115
Confidence: 99.9%
Identity: 46%
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein);
PDBTitle: multiple antibiotic resistance protein (mara)/dna complex

Phyre2

PDB 3oou chain A

3D model

Region: 6 - 106
Aligned: 101
Modelled: 101
Confidence: 99.9%
Identity: 24%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2118 protein;
PDBTitle: the structure of a protein with unkown function from listeria innocua

Phyre2

PDB 2k9s chain A

3D model

Region: 1 - 108
Aligned: 106
Modelled: 108
Confidence: 99.9%
Identity: 27%
PDB header:transcription
Chain: A: PDB Molecule:arabinose operon regulatory protein;
PDBTitle: solution structure of dna binding domain of e. coli arac

Phyre2

PDB 3oio chain A

3D model

Region: 5 - 106
Aligned: 102
Modelled: 102
Confidence: 99.9%
Identity: 27%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain-
PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum

Phyre2

PDB 1jyh chain A

3D model

Region: 126 - 289
Aligned: 153
Modelled: 164
Confidence: 99.9%
Identity: 7%
Fold: Probable bacterial effector-binding domain
Superfamily: Probable bacterial effector-binding domain
Family: Gyrase inhibitory protein GyrI (SbmC, YeeB)

Phyre2

PDB 3mn2 chain B

3D model

Region: 4 - 109
Aligned: 106
Modelled: 106
Confidence: 99.9%
Identity: 19%
PDB header:transcription regulator
Chain: B: PDB Molecule:probable arac family transcriptional regulator;
PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009

Phyre2

PDB 3mkl chain B

3D model

Region: 5 - 106
Aligned: 101
Modelled: 100
Confidence: 99.9%
Identity: 13%
PDB header:transcription regulator
Chain: B: PDB Molecule:hth-type transcriptional regulator gadx;
PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12

Phyre2

PDB 3gk6 chain A

3D model

Region: 121 - 288
Aligned: 152
Modelled: 168
Confidence: 99.9%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:integron cassette protein vch_cass2;
PDBTitle: crystal structure from the mobile metagenome of vibrio cholerae.2 integron cassette protein vch_cass2.

Phyre2

PDB 3lsg chain D

3D model

Region: 5 - 96
Aligned: 92
Modelled: 92
Confidence: 99.8%
Identity: 23%
PDB header:transcription regulator
Chain: D: PDB Molecule:two-component response regulator yesn;
PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586

Phyre2

PDB 2kcu chain A

3D model

Region: 120 - 289
Aligned: 157
Modelled: 170
Confidence: 99.8%
Identity: 10%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ctr107;
PDBTitle: nmr solution structure of an uncharacterized protein from2 chlorobium tepidum. northeast structural genomics target3 ctr107

Phyre2

PDB 3b49 chain A

3D model

Region: 127 - 287
Aligned: 157
Modelled: 161
Confidence: 99.6%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2189 protein;
PDBTitle: crystal structure of an uncharacterized conserved protein from2 listeria innocua

Phyre2

PDB 1d5y chain A domain 2

3D model

Region: 57 - 121
Aligned: 65
Modelled: 65
Confidence: 99.5%
Identity: 100%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: AraC type transcriptional activator

Phyre2

PDB 1bl0 chain A domain 2

3D model

Region: 57 - 118
Aligned: 62
Modelled: 62
Confidence: 99.4%
Identity: 37%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: AraC type transcriptional activator

Phyre2

PDB 3d6z chain A

3D model

Region: 19 - 288
Aligned: 261
Modelled: 270
Confidence: 99.4%
Identity: 12%
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator;
PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine

Phyre2

PDB 1r8e chain A domain 2

3D model

Region: 127 - 287
Aligned: 152
Modelled: 161
Confidence: 99.4%
Identity: 14%
Fold: Probable bacterial effector-binding domain
Superfamily: Probable bacterial effector-binding domain
Family: Multidrug-binding domain of transcription activator BmrR

Phyre2

PDB 1d5y chain A domain 1

3D model

Region: 3 - 55
Aligned: 53
Modelled: 53
Confidence: 99.1%
Identity: 100%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: AraC type transcriptional activator

Phyre2
1

c1d5yD_
2

d1d5ya3
3

c3gbgA_
4

c3lurB_
5

c1bl0A_
6

c3oouA_
7

c2k9sA_
8

c3oioA_
9

d1jyha_
10

c3mn2B_
11

c3mklB_
12

c3gk6A_
13

c3lsgD_
14

c2kcuA_
15

c3b49A_
16

d1d5ya2
17

d1bl0a2
18

c3d6zA_
19

d1r8ea2
20

d1d5ya1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1d5yD_



100.0 100 PDB header:transcription/dna
Chain: D: PDB Molecule:rob transcription factor;
PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna
2d1d5ya3



100.0 100 Fold:Probable bacterial effector-binding domain
Superfamily:Probable bacterial effector-binding domain
Family:Rob transcription factor, C-terminal domain
3c3gbgA_



99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:tcp pilus virulence regulatory protein;
PDBTitle: crystal structure of toxt from vibrio cholerae o395
4c3lurB_



99.9 18 PDB header:transcription activator
Chain: B: PDB Molecule:putative bacterial transcription regulation protein;
PDBTitle: crystal structure of putative bacterial transcription regulation2 protein (np_372959.1) from staphylococcus aureus mu50 at 1.81 a3 resolution
5c1bl0A_



99.9 46 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein);
PDBTitle: multiple antibiotic resistance protein (mara)/dna complex
6c3oouA_



99.9 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2118 protein;
PDBTitle: the structure of a protein with unkown function from listeria innocua
7c2k9sA_



99.9 27 PDB header:transcription
Chain: A: PDB Molecule:arabinose operon regulatory protein;
PDBTitle: solution structure of dna binding domain of e. coli arac
8c3oioA_



99.9 27 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain-
PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum
9d1jyha_



99.9 7 Fold:Probable bacterial effector-binding domain
Superfamily:Probable bacterial effector-binding domain
Family:Gyrase inhibitory protein GyrI (SbmC, YeeB)
10c3mn2B_



99.9 19 PDB header:transcription regulator
Chain: B: PDB Molecule:probable arac family transcriptional regulator;
PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009
11c3mklB_



99.9 13 PDB header:transcription regulator
Chain: B: PDB Molecule:hth-type transcriptional regulator gadx;
PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12
12c3gk6A_



99.9 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:integron cassette protein vch_cass2;
PDBTitle: crystal structure from the mobile metagenome of vibrio cholerae.2 integron cassette protein vch_cass2.
13c3lsgD_



99.8 23 PDB header:transcription regulator
Chain: D: PDB Molecule:two-component response regulator yesn;
PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586
14c2kcuA_



99.8 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ctr107;
PDBTitle: nmr solution structure of an uncharacterized protein from2 chlorobium tepidum. northeast structural genomics target3 ctr107
15c3b49A_



99.6 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2189 protein;
PDBTitle: crystal structure of an uncharacterized conserved protein from2 listeria innocua
16d1d5ya2



99.5 100 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
17d1bl0a2



99.4 37 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
18c3d6zA_



99.4 12 PDB header:transcription regulator/dna
Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator;
PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine
19d1r8ea2



99.4 14 Fold:Probable bacterial effector-binding domain
Superfamily:Probable bacterial effector-binding domain
Family:Multidrug-binding domain of transcription activator BmrR
20d1d5ya1



99.1 100 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
21d1bl0a1



not modelled 99.1 58 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
22c1zgwA_



not modelled 99.0 30 PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ada polyprotein;
PDBTitle: nmr structure of e. coli ada protein in complex with dna
23c3iwfA_



not modelled 94.2 12 PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
24d2hsga1



not modelled 94.0 15 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
25d1sgma1



not modelled 93.6 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
26d1efaa1



not modelled 93.6 23 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
27d2bjca1



not modelled 93.4 21 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
28d1qpza1



not modelled 93.4 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
29d1biaa1



not modelled 92.9 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
30d1jt6a1



not modelled 92.9 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
31d2i10a1



not modelled 92.9 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
32c2o3fC_



not modelled 92.9 20 PDB header:transcription
Chain: C: PDB Molecule:putative hth-type transcriptional regulator ybbh;
PDBTitle: structural genomics, the crystal structure of the n-2 terminal domain of the putative transcriptional regulator3 ybbh from bacillus subtilis subsp. subtilis str. 168.
33d2o3fa1



not modelled 92.8 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:RpiR-like
34d2vkea1



not modelled 92.8 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
35d2fq4a1



not modelled 92.6 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
36d2fbqa1



not modelled 92.4 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
37d2g3ba1



not modelled 92.2 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
38d2id3a1



not modelled 92.0 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
39c1vi0B_



not modelled 92.0 17 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator
40d1pb6a1



not modelled 92.0 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
41d2gena1



not modelled 91.9 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
42d2np5a1



not modelled 91.9 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
43d1j5ya1



not modelled 91.9 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
44c2f07A_



not modelled 91.5 15 PDB header:transcription
Chain: A: PDB Molecule:yvdt;
PDBTitle: crystal structure of yvdt from bacillus subtilis
45c3kjxD_



not modelled 91.5 21 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi
46c1bdhA_



not modelled 91.4 15 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
47c3h5tA_



not modelled 91.3 34 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
48d2fx0a1



not modelled 91.3 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
49c3bniA_



not modelled 91.3 22 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
50d1ui5a1



not modelled 91.2 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
51c1sgmA_



not modelled 91.2 14 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf;
PDBTitle: crystal structure of hypothetical protein yxaf
52d2d6ya1



not modelled 91.0 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
53c2g3bB_



not modelled 91.0 23 PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp.
54d3c07a1



not modelled 91.0 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
55d2hyja1



not modelled 91.0 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
56c2fq4A_



not modelled 91.0 20 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator (tetr family)2 from bacillus cereus
57d1mkma1



not modelled 90.9 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
58d2fd5a1



not modelled 90.9 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
59c2nx4A_



not modelled 90.9 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.
60d2gfna1



not modelled 90.9 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
61c1jumB_



not modelled 90.9 15 PDB header:transcription
Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca
PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine
62c3bhqB_



not modelled 90.9 24 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution
63d2g7sa1



not modelled 90.8 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
64c3lwjA_



not modelled 90.8 12 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution
65c2eh3A_



not modelled 90.8 20 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5
66d1v7ba1



not modelled 90.7 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
67c3o60A_



not modelled 90.7 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0861 protein;
PDBTitle: the crystal structure of lin0861 from listeria innocua to 2.8a
68c2hytA_



not modelled 90.6 17 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (eca1819)2 from pectobacterium atrosepticum at 1.64 a resolution
69d2id6a1



not modelled 90.5 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
70c3anpD_



not modelled 90.5 15 PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor, tetr family;
PDBTitle: crystal structure of thermus thermophilus fadr, a tetr familly2 transcriptional repressor, in complex with lauroyl-coa.
71c2i10A_



not modelled 90.5 12 PDB header:transcription
Chain: A: PDB Molecule:putative tetr transcriptional regulator;
PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1
72c3b6aC_



not modelled 90.4 19 PDB header:transcription
Chain: C: PDB Molecule:actr protein;
PDBTitle: crystal structure of the streptomyces coelicolor tetr2 family protein actr in complex with actinorhodin
73d2vkva1



not modelled 90.4 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
74c3f1bA_



not modelled 90.2 23 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr-like transcriptional regulator;
PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1.
75c1zvvA_



not modelled 90.2 14 PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
76d1t56a1



not modelled 90.2 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
77c3ppbB_



not modelled 90.1 20 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr family transcription regulator;
PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution
78c2genA_



not modelled 90.1 18 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1
79c3b81A_



not modelled 90.0 18 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, acrr family;
PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution
80c2qtqB_



not modelled 90.0 10 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution
81c3kkcB_



not modelled 89.9 10 PDB header:transcription regulator
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: the crystal structure of tetr transcriptional regulator from2 streptococcus agalactiae 2603v
82c3dewA_



not modelled 89.9 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca.
83c3bcgA_



not modelled 89.9 20 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator acrr;
PDBTitle: conformational changes of the acrr regulator reveal a2 mechanism of induction
84d1lcda_



not modelled 89.9 28 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
85c2fbqA_



not modelled 89.8 17 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of transcriptional regulator pa3006
86d1zk8a1



not modelled 89.7 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
87c2id3A_



not modelled 89.7 20 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator sco5951 from2 streptomyces coelicolor a3(2)
88c2dg7A_



not modelled 89.6 20 PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2)
89c3bruA_



not modelled 89.6 15 PDB header:transcription
Chain: A: PDB Molecule:regulatory protein, tetr family;
PDBTitle: crystal structure of regulatory protein tetr from rhodobacter2 sphaeroides
90d1vi0a1



not modelled 89.5 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
91c3dcfB_



not modelled 89.5 23 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr
PDBTitle: crystal structure of transcriptional regulator of the2 tetr/acrr family (yp_290855.1) from thermobifida fusca yx-3 er1 at 2.50 a resolution
92c3c07B_



not modelled 89.5 18 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator from2 streptomyces coelicolor a3(2)
93c2wuiA_



not modelled 89.4 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa.
94c2of7A_



not modelled 89.4 15 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a tetr-family2 transcriptional regulator from streptomyces coelicolor a3
95c2np5A_



not modelled 89.3 23 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator (rha1_ro04179) from2 rhodococcus sp. rha1.
96c3f0cA_



not modelled 89.3 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406
97c2gfnA_



not modelled 89.3 12 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein;
PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1
98c3he0A_



not modelled 89.3 23 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative transcriptional regulator tetr family2 protein from vibrio parahaemolyticus.
99c2yvhA_



not modelled 89.3 27 PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of the operator-binding form of the multi-drug2 binding transcriptional repressor cgmr
100c2raeA_



not modelled 89.2 25 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, acrr family protein;
PDBTitle: crystal structure of a tetr/acrr family transcriptional regulator from2 rhodococcus sp. rha1
101d2g7la1



not modelled 89.2 7 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
102c3on4D_



not modelled 89.2 9 PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila
103d1rkta1



not modelled 89.2 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
104d2o7ta1



not modelled 89.2 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
105c3iuvA_



not modelled 89.1 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized tetr family protein;
PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3
106c3cwrA_



not modelled 89.1 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator of tetr2 family (yp_425770.1) from rhodospirillum rubrum atcc 111703 at 1.50 a resolution
107c2pbxB_



not modelled 89.1 13 PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr
108c3fiwB_



not modelled 89.0 19 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor
109c3npiB_



not modelled 88.9 19 PDB header:gene regulation
Chain: B: PDB Molecule:tetr family regulatory protein;
PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution
110c2ibdB_



not modelled 88.9 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:possible transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900
111d1rp3a1



not modelled 88.9 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
112c3mvpA_



not modelled 88.7 17 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr/acrr transcriptional regulator;
PDBTitle: the crystal structure of a tetr/acrr transcriptional regulator from2 streptococcus mutans to 1.85a
113c3c2bA_



not modelled 88.7 25 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from agrobacterium2 tumefaciens
114c2zb9A_



not modelled 88.6 23 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of tetr family transcription regulator2 sco0332
115c2jk3A_



not modelled 88.5 12 PDB header:transcription
Chain: A: PDB Molecule:hemolysin ii regulatory protein;
PDBTitle: crystal structure of the hlyiir mutant protein with2 residues 169-186 substituted by gssgssg linker
116c3colB_



not modelled 88.4 18 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcription regulator;
PDBTitle: crystal structure of putative transcription regulator from2 lactobacillus plantarum
117c3cdlA_



not modelled 88.4 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator aefr;
PDBTitle: crystal structure of a tetr family transcriptional regulator from2 pseudomonas syringae pv. tomato str. dc3000
118c2guhA_



not modelled 88.4 18 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of the putative tetr-family transcriptional2 regulator from rhodococcus sp. rha1
119c3ljlB_



not modelled 88.4 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator luxt;
PDBTitle: the crystal structure of the full-length transcriptional regulator2 luxt from vibrio parahaemolyticus rimd 2210633.
120d1uxda_



not modelled 88.4 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0