Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	A	F	I	R	F	L	F	A	G	L	L	L	V	I	S	H	A	F	A	A	T	V	Q	D	E	H	G	T	F	T	L	E	K	T	P	Q	R	I	V	V	L	E	L	S	F	A	D	A	L	A	A	V	D	V	I	P	I	G
Secondary structure
SS confidence
Disorder		?															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	A	D	D	N	D	A	K	R	I	L	P	E	V	R	A	H	L	K	P	W	Q	S	V	G	T	R	A	Q	P	S	L	E	A	I	A	A	L	K	P	D	L	I	I	A	D	S	S	R	H	A	G	V	Y	I	A	L	Q	Q	I
Secondary structure
SS confidence
Disorder																									?		?																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	P	V	L	L	L	K	S	R	N	E	T	Y	A	E	N	L	Q	S	A	A	I	I	G	E	M	V	G	K	K	R	E	M	Q	A	R	L	E	Q	H	K	E	R	M	A	Q	W	A	S	Q	L	P	K	G	T	R	V	A	F	G
Secondary structure
SS confidence
Disorder																																																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	S	R	E	Q	Q	F	N	L	H	T	Q	E	T	W	T	G	S	V	L	A	S	L	G	L	N	V	P	A	A	M	A	G	A	S	M	P	S	I	G	L	E	Q	L	L	A	V	N	P	A	W	L	L	V	A	H	Y	R	E	E
Secondary structure
SS confidence
Disorder																																?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	I	V	K	R	W	Q	Q	D	P	L	W	Q	M	L	T	A	A	Q	K	Q	Q	V	A	S	V	D	S	N	T	W	A	R	M	R	G	I	F	A	A	E	R	I	A	A	D	T	V	K	I	F	H	H	Q	P	L	T	V	V	K
Secondary structure
SS confidence
Disorder																														?	?	?	?	?																						?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3eiw chain A Region: 19 - 294 Aligned: 276 Modelled: 276 Confidence: 100.0% Identity: 37% PDB header:transport protein Chain: A: PDB Molecule:htsa protein; PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa Phyre2 PDB 2chu chain A domain 1 Region: 17 - 291 Aligned: 269 Modelled: 275 Confidence: 100.0% Identity: 22% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 3psh chain A Region: 22 - 300 Aligned: 278 Modelled: 279 Confidence: 100.0% Identity: 18% PDB header:metal transport Chain: A: PDB Molecule:protein hi_1472; PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate) Phyre2 PDB 3gfv chain A Region: 21 - 294 Aligned: 272 Modelled: 274 Confidence: 100.0% Identity: 19% PDB header:transport protein Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding PDBTitle: crystal structure of petrobactin-binding protein yclq from2 bacillu subtilis Phyre2 PDB 3be5 chain D Region: 22 - 296 Aligned: 269 Modelled: 275 Confidence: 100.0% Identity: 20% PDB header:metal transport Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein Phyre2 PDB 2phz chain A domain 1 Region: 22 - 292 Aligned: 266 Modelled: 271 Confidence: 100.0% Identity: 14% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 2phz chain A Region: 22 - 292 Aligned: 266 Modelled: 271 Confidence: 100.0% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:iron-uptake system-binding protein; PDBTitle: crystal structure of iron-uptake system-binding protein2 feua from bacillus subtilis. northeast structural genomics3 target sr580. Phyre2 PDB 2q8p chain A Region: 39 - 292 Aligned: 246 Modelled: 254 Confidence: 100.0% Identity: 17% PDB header:metal transport Chain: A: PDB Molecule:iron-regulated surface determinant e; PDBTitle: crystal structure of selenomethionine labelled s. aureus isde2 complexed with heme Phyre2 PDB 2r79 chain A Region: 37 - 296 Aligned: 250 Modelled: 260 Confidence: 100.0% Identity: 19% PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa Phyre2 PDB 3mwg chain A Region: 38 - 294 Aligned: 253 Modelled: 257 Confidence: 100.0% Identity: 22% PDB header:transport protein Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein PDBTitle: crystal structure of staphylococcus aureus sira Phyre2 PDB 1esz chain A Region: 36 - 291 Aligned: 252 Modelled: 256 Confidence: 100.0% Identity: 17% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Periplasmic ferric siderophore binding protein FhuD Phyre2 PDB 3md9 chain A Region: 38 - 293 Aligned: 248 Modelled: 251 Confidence: 100.0% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut; PDBTitle: structure of apo form of a periplasmic heme binding protein Phyre2 PDB 2r7a chain C Region: 38 - 294 Aligned: 246 Modelled: 257 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae Phyre2 PDB 2x4l chain A Region: 21 - 293 Aligned: 268 Modelled: 273 Confidence: 100.0% Identity: 17% PDB header:transport Chain: A: PDB Molecule:ferric-siderophore receptor protein; PDBTitle: crystal structure of dese, a ferric-siderophore receptor2 protein from streptomyces coelicolor Phyre2 PDB 1n2z chain A Region: 36 - 293 Aligned: 241 Modelled: 258 Confidence: 100.0% Identity: 17% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TroA-like Phyre2 PDB 3g9q chain A Region: 33 - 292 Aligned: 244 Modelled: 255 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:ferrichrome-binding protein; PDBTitle: crystal structure of the fhud fold-family bsu3320, a periplasmic2 binding protein component of a fep/fec-like ferrichrome abc3 transporter from bacillus subtilis. northeast structural genomics4 consortium target sr577a Phyre2 PDB 2etv chain A domain 1 Region: 26 - 297 Aligned: 266 Modelled: 272 Confidence: 100.0% Identity: 14% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 1qh8 chain A Region: 45 - 293 Aligned: 214 Modelled: 221 Confidence: 96.3% Identity: 14% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 1m1n chain A Region: 45 - 293 Aligned: 214 Modelled: 224 Confidence: 96.1% Identity: 11% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 3aer chain C Region: 45 - 291 Aligned: 217 Modelled: 223 Confidence: 95.6% Identity: 12% PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark Phyre2 1 c3eiwA_ 2 d2chua1 3 c3pshA_ 4 c3gfvA_ 5 c3be5D_ 6 d2phza1 7 c2phzA_ 8 c2q8pA_ 9 c2r79A_ 10 c3mwgA_ 11 d1esza_ 12 c3md9A_ 13 c2r7aC_ 14 c2x4lA_ 15 d1n2za_ 16 c3g9qA_ 17 d2etva1 18 d1qh8a_ 19 d1m1na_ 20 c3aerC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3eiwA_ 100.0 37 PDB header:transport protein Chain: A: PDB Molecule:htsa protein; PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa 2 d2chua1 100.0 22 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 3 c3pshA_ 100.0 18 PDB header:metal transport Chain: A: PDB Molecule:protein hi_1472; PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate) 4 c3gfvA_ 100.0 19 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding PDBTitle: crystal structure of petrobactin-binding protein yclq from2 bacillu subtilis 5 c3be5D_ 100.0 20 PDB header:metal transport Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein 6 d2phza1 100.0 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 7 c2phzA_ 100.0 14 PDB header:transport protein Chain: A: PDB Molecule:iron-uptake system-binding protein; PDBTitle: crystal structure of iron-uptake system-binding protein2 feua from bacillus subtilis. northeast structural genomics3 target sr580. 8 c2q8pA_ 100.0 17 PDB header:metal transport Chain: A: PDB Molecule:iron-regulated surface determinant e; PDBTitle: crystal structure of selenomethionine labelled s. aureus isde2 complexed with heme 9 c2r79A_ 100.0 19 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa 10 c3mwgA_ 100.0 22 PDB header:transport protein Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein PDBTitle: crystal structure of staphylococcus aureus sira 11 d1esza_ 100.0 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Periplasmic ferric siderophore binding protein FhuD 12 c3md9A_ 100.0 13 PDB header:transport protein Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut; PDBTitle: structure of apo form of a periplasmic heme binding protein 13 c2r7aC_ 100.0 17 PDB header:transport protein Chain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae 14 c2x4lA_ 100.0 17 PDB header:transport Chain: A: PDB Molecule:ferric-siderophore receptor protein; PDBTitle: crystal structure of dese, a ferric-siderophore receptor2 protein from streptomyces coelicolor 15 d1n2za_ 100.0 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 16 c3g9qA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:ferrichrome-binding protein; PDBTitle: crystal structure of the fhud fold-family bsu3320, a periplasmic2 binding protein component of a fep/fec-like ferrichrome abc3 transporter from bacillus subtilis. northeast structural genomics4 consortium target sr577a 17 d2etva1 100.0 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 18 d1qh8a_ 96.3 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 19 d1m1na_ 96.1 11 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 20 c3aerC_ 95.6 12 PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 21 c3pdiG_ not modelled 94.9 13 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 22 d1mioa_ not modelled 93.4 12 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 23 d1qh8b_ not modelled 93.0 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 24 c3eywA_ not modelled 91.8 17 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 25 d1m1nb_ not modelled 91.7 24 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 26 d1miob_ not modelled 89.0 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 27 c2xdqB_ not modelled 88.8 8 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 28 c3pdiB_ not modelled 73.6 15 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 29 d1gmla_ not modelled 66.5 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 30 d7reqa2 not modelled 65.4 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 31 c3aerB_ not modelled 65.2 21 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 32 c2xdqA_ not modelled 64.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 33 d1q3qa2 not modelled 64.5 8 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 34 c3obiC_ not modelled 62.4 17 PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution 35 c1z7eC_ not modelled 62.1 24 PDB header:hydrolase Chain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna 36 d1assa_ not modelled 61.0 8 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 37 d1a6db2 not modelled 58.8 8 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 38 d2blna2 not modelled 52.4 24 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 39 c1yrwA_ not modelled 45.4 24 PDB header:transferase Chain: A: PDB Molecule:protein arna; PDBTitle: crystal structure of e.coli arna transformylase domain 40 d1a9xb2 not modelled 43.4 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 41 c3k8zD_ not modelled 39.7 11 PDB header:oxidoreductase Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis 42 c2r8rB_ not modelled 38.5 14 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000 43 c3cx3A_ not modelled 37.3 10 PDB header:metal binding protein Chain: A: PDB Molecule:lipoprotein; PDBTitle: crystal structure analysis of the streptococcus pneumoniae2 adcaii protein 44 c2ov3A_ not modelled 37.1 14 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein component of an abc PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc2 bound 45 c3hg7A_ not modelled 34.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:d-isomer specific 2-hydroxyacid dehydrogenase family PDBTitle: crystal structure of d-isomer specific 2-hydroxyacid dehydrogenase2 family protein from aeromonas salmonicida subsp. salmonicida a449 46 c3q0iA_ not modelled 32.5 19 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: methionyl-trna formyltransferase from vibrio cholerae 47 d1fyea_ not modelled 32.3 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 48 c2yxbA_ not modelled 31.8 11 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 49 d1fmta2 not modelled 29.0 18 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 50 c3tqrA_ not modelled 28.9 20 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii 51 c3hjtB_ not modelled 27.8 16 PDB header:cell adhesion, transport protein Chain: B: PDB Molecule:lmb; PDBTitle: structure of laminin binding protein (lmb) of streptococcus2 agalactiae a bifunctional protein with adhesin and metal3 transporting activity 52 c3tqqA_ not modelled 26.7 13 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: structure of the methionyl-trna formyltransferase (fmt) from coxiella2 burnetii 53 c1fmtA_ not modelled 26.1 18 PDB header:formyltransferase Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase; PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli 54 c2waoA_ not modelled 24.7 5 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase e; PDBTitle: structure of a family two carbohydrate esterase from2 clostridium thermocellum in complex with cellohexaose 55 c3p9xB_ not modelled 23.8 12 PDB header:transferase Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans 56 d1s3ia2 not modelled 22.8 17 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 57 d1zgha2 not modelled 22.6 10 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 58 c3o1lB_ not modelled 21.8 10 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 59 c3lo3E_ not modelled 21.5 9 PDB header:structure genomics, unknown function Chain: E: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown2 protein from colwellia psychrerythraea 34h. 60 d1psza_ not modelled 21.2 11 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 61 c1s3iA_ not modelled 21.1 15 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the n terminal hydrolase domain of 10-2 formyltetrahydrofolate dehydrogenase 62 d1bvua1 not modelled 20.6 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 63 d2bw0a2 not modelled 19.2 15 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 64 c2ywrA_ not modelled 18.8 17 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of gar transformylase from aquifex2 aeolicus 65 c1bvuF_ not modelled 18.7 11 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: glutamate dehydrogenase from thermococcus litoralis 66 c3ndjA_ not modelled 18.2 13 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product 67 c3en0A_ not modelled 17.9 6 PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase 68 c3louB_ not modelled 17.6 12 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 69 c1ulzA_ not modelled 17.0 10 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain; PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase 70 c3cu5B_ not modelled 16.5 7 PDB header:transcription regulator Chain: B: PDB Molecule:two component transcriptional regulator, arac family; PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg 71 c3rfoA_ not modelled 15.9 18 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: crystal structure of methyionyl-trna formyltransferase from bacillus2 anthracis 72 c1keeH_ not modelled 15.6 23 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 73 d1fmfa_ not modelled 15.2 16 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 74 c2gm2A_ not modelled 15.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 75 c2okxB_ not modelled 15.0 12 PDB header:hydrolase Chain: B: PDB Molecule:rhamnosidase b; PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a 76 c3nrbD_ not modelled 15.0 17 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 77 d2q4qa1 not modelled 14.9 6 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 78 c1zghA_ not modelled 14.6 24 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: methionyl-trna formyltransferase from clostridium thermocellum 79 c3n0vD_ not modelled 14.2 14 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 80 d2fiua1 not modelled 13.4 12 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Atu0297-like 81 d1b26a1 not modelled 13.3 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 82 d2ji7a1 not modelled 12.5 9 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 83 c1bmtB_ not modelled 12.2 14 PDB header:methyltransferase Chain: B: PDB Molecule:methionine synthase; PDBTitle: how a protein binds b12: a 3.o angstrom x-ray structure of2 the b12-binding domains of methionine synthase 84 c2ps3A_ not modelled 12.0 10 PDB header:metal transport Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: structure and metal binding properties of znua, a2 periplasmic zinc transporter from escherichia coli 85 c3gg9C_ not modelled 11.9 14 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase oxidoreductase protein; PDBTitle: crystal structure of putative d-3-phosphoglycerate dehydrogenase2 oxidoreductase from ralstonia solanacearum 86 c3aogA_ not modelled 11.8 9 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: crystal structure of glutamate dehydrogenase (gdhb) from thermus2 thermophilus (glu bound form) 87 d1pq4a_ not modelled 11.7 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 88 d2cyja1 not modelled 10.9 15 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 89 c3dcjA_ not modelled 10.7 22 PDB header:transferase Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative 90 c2zwrA_ not modelled 10.5 15 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase superfamily protein; PDBTitle: crystal structure of ttha1623 from thermus thermophilus hb8 91 c1y80A_ not modelled 9.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 92 c2j6iC_ not modelled 9.6 13 PDB header:oxidoreductase Chain: C: PDB Molecule:formate dehydrogenase; PDBTitle: candida boidinii formate dehydrogenase (fdh) c-terminal2 mutant 93 c3chgB_ not modelled 9.1 20 PDB header:ligand binding protein Chain: B: PDB Molecule:glycine betaine-binding protein; PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa 94 c3l4eA_ not modelled 9.0 12 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 95 c2w2kB_ not modelled 9.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:d-mandelate dehydrogenase; PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a. 96 d1ihna_ not modelled 9.0 40 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 97 c2dzdB_ not modelled 8.8 10 PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of the biotin carboxylase domain of2 pyruvate carboxylase 98 c3cihA_ not modelled 8.8 21 PDB header:hydrolase Chain: A: PDB Molecule:putative alpha-rhamnosidase; PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron 99 d2a9pa1 not modelled 8.6 20 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0