Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP45420
DateThu Jan 5 12:02:33 GMT 2012
Unique Job ID513205e7e701c3a6

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3rfzB_
Top template information
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
Confidence and coverage
Confidence:100.0% Coverage: 92%
729 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLKKTLLAYTIGFAFSPPANADGIEIAAVDFDRETLKSLGVDPNISHYFSRSARFLPGEY
Secondary structure 
SS confidence 
Disorder  ?????
??????
?
?????????
???????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  SLIVSVNGEKKGNIATRFDENGDICLDQAFLQQAGLKIPSEEKNGCYDYILSYPGTTITP
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LPNQEALDIIVSPQAIIPIGLDLTNAATGGTAALLNYSLMSSRAEFSNGSSDYSQAALEG
Secondary structure 
SS confidence 
Disorder 
?
???????????????
?????????
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  GININDWMLRSHQFLTQTNGTFSNQNSSTYLQRTFTDLKTLMRAGEVNLNNSVLEGASIY
Secondary structure 
SS confidence 
Disorder 
?????????
?
?
????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  GIEIAPDNALQTSGSGVQVTGIANTSQARVEIRQQGVLIHSILVPAGAFTIPDVPVRNGN
Secondary structure 
SS confidence 
Disorder 
???????????
??
??????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  SDLNVTVVETDGSSHNYIVPSTLFNQHVESFQGYRFAIGRVDDDYDESPWVISASSGWNL
Secondary structure 
SS confidence 
Disorder 
???????????
?????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  TRWSAMNGGVIVAENYQAASIRSSLVPLPDLTVSSQISTSQDTKDSLQGQKYRLDANYNL
Secondary structure 
SS confidence 
Disorder 
?
??????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  PFSLGLTTSLTRSDRHYRELSEAIDDDYTDPTKSTYALGLNWSNSILGGFNISGYKTYSY
Secondary structure 
SS confidence 
Disorder  ??
?
???
??
?????????
???
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  DGDNDSSNLNINWNKAFKHATVSVNWQHQLSASENNEDDGDLFYVNISIPFGRSNTATLY
Secondary structure 
SS confidence 
Disorder  ??????
??????????
???
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  TRHDDHKTHYGTGVMGVVSDEMSYYVNAERDHDERETSLNGSISSNLHYTQVSLAAGASG
Secondary structure 
SS confidence 
Disorder 
??????
???
?
????????
?
??
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  SDSRTYNGTMSGGIAVHDQGVTFSPWTINDTFAIAKMDNNIAGVRITSQAGPVWTDFRGN
Secondary structure 
SS confidence 
Disorder  ???
????
??????
??????
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  AVIPSIQPWRTSGVEIDTASLPKNVDIGNGTKMIKQGRGAVGKVGFSAITQRRALLNITL
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  SDGKKLPRGVAIEDSEGNYLTTSVDDGVVFLNNIKPDMVLDIKDEQQSCRIHLTFPEDAP
Secondary structure 
SS confidence 
Disorder 
???
????
Disorder confidence 
 
   .........790...
Sequence  KDVFYETATGECQ
Secondary structure 
SS confidence 
Disorder  ????
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3rfz chain B

3D model

Region: 54 - 793
Aligned: 729
Modelled: 740
Confidence: 100.0%
Identity: 22%
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate

Phyre2

PDB 3ohn chain A

3D model

Region: 152 - 614
Aligned: 450
Modelled: 463
Confidence: 100.0%
Identity: 22%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain

Phyre2

PDB 2vqi chain A

3D model

Region: 153 - 618
Aligned: 458
Modelled: 461
Confidence: 100.0%
Identity: 22%
PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore

Phyre2

PDB 3bwu chain D domain 1

3D model

Region: 29 - 138
Aligned: 110
Modelled: 110
Confidence: 99.9%
Identity: 17%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 1zdv chain A domain 1

3D model

Region: 52 - 152
Aligned: 101
Modelled: 101
Confidence: 99.9%
Identity: 18%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3fcg chain B

3D model

Region: 251 - 326
Aligned: 69
Modelled: 76
Confidence: 99.9%
Identity: 33%
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher

Phyre2

PDB 1zdx chain A domain 1

3D model

Region: 52 - 140
Aligned: 89
Modelled: 89
Confidence: 99.8%
Identity: 18%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 2xet chain B

3D model

Region: 713 - 792
Aligned: 79
Modelled: 80
Confidence: 99.8%
Identity: 24%
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly

Phyre2

PDB 3l48 chain B

3D model

Region: 711 - 793
Aligned: 78
Modelled: 83
Confidence: 99.7%
Identity: 19%
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher

Phyre2

PDB 1h8l chain A domain 1

3D model

Region: 714 - 787
Aligned: 73
Modelled: 74
Confidence: 95.8%
Identity: 11%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 1h8l chain A

3D model

Region: 712 - 787
Aligned: 74
Modelled: 76
Confidence: 95.8%
Identity: 12%
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa

Phyre2

PDB 2nsm chain A

3D model

Region: 714 - 789
Aligned: 75
Modelled: 76
Confidence: 95.6%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain

Phyre2

PDB 1w0n chain A

3D model

Region: 236 - 313
Aligned: 78
Modelled: 78
Confidence: 93.5%
Identity: 18%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 36 carbohydrate binding module, CBM36

Phyre2

PDB 3pdg chain A

3D model

Region: 268 - 316
Aligned: 47
Modelled: 49
Confidence: 93.4%
Identity: 26%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1uwy chain A

3D model

Region: 714 - 786
Aligned: 72
Modelled: 73
Confidence: 92.4%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m

Phyre2

PDB 1uwy chain A domain 1

3D model

Region: 714 - 786
Aligned: 73
Modelled: 73
Confidence: 91.3%
Identity: 8%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 3pe9 chain B

3D model

Region: 258 - 314
Aligned: 53
Modelled: 57
Confidence: 90.8%
Identity: 21%
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 2x5p chain A

3D model

Region: 699 - 763
Aligned: 60
Modelled: 65
Confidence: 89.4%
Identity: 27%
PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b

Phyre2

PDB 3mn8 chain A

3D model

Region: 714 - 790
Aligned: 76
Modelled: 77
Confidence: 88.3%
Identity: 8%
PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short

Phyre2

PDB 3pe9 chain D

3D model

Region: 258 - 314
Aligned: 54
Modelled: 57
Confidence: 88.2%
Identity: 19%
PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2
1
c3rfzB_
2
c3ohnA_
3
c2vqiA_
4
d3bwud1
5
d1zdva1
6
c3fcgB_
7
d1zdxa1
8
c2xetB_
9
c3l48B_
10
d1h8la1
11
c1h8lA_
12
c2nsmA_
13
d1w0na_
14
c3pdgA_
15
c1uwyA_
16
d1uwya1
17
c3pe9B_
18
c2x5pA_
19
c3mn8A_
20
c3pe9D_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3rfzB_
100.0 22 PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
2c3ohnA_
100.0 22 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
3c2vqiA_
100.0 22 PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore
4d3bwud1
99.9 17 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
5d1zdva1
99.9 18 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
6c3fcgB_
99.9 33 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
7d1zdxa1
99.8 18 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
8c2xetB_
99.8 24 PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
9c3l48B_
99.7 19 PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
10d1h8la1
95.8 11 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
11c1h8lA_
95.8 12 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
12c2nsmA_
95.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
13d1w0na_
93.5 18 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 36 carbohydrate binding module, CBM36
14c3pdgA_
93.4 26 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
15c1uwyA_
92.4 13 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
16d1uwya1
91.3 8 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
17c3pe9B_
90.8 21 PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
18c2x5pA_
89.4 27 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
19c3mn8A_
88.3 8 PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
20c3pe9D_
88.2 19 PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
21d1nkga1
not modelled 86.6 11 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Rhamnogalacturonase B, RhgB, middle domain
22c3pe9A_
not modelled 84.4 23 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
23c3pe9C_
not modelled 84.4 23 PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
24d1t16a_
not modelled 83.3 9 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
25c1d2pA_
not modelled 80.7 15 PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus
26d2burb1
not modelled 78.2 22 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
27d3pccm_
not modelled 76.6 26 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
28c3c12A_
not modelled 71.4 19 PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
29c2boyC_
not modelled 70.2 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp
30d3pcca_
not modelled 67.5 21 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
31c2azqA_
not modelled 64.9 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla2 c-1
32c3n9tA_
not modelled 63.9 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:pnpc;
PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4
33d1s9aa_
not modelled 63.3 16 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
34c2xsuA_
not modelled 62.2 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2 dioxygenase;
PDBTitle: crystal structure of the a72g mutant of acinetobacter2 radioresistens catechol 1,2 dioxygenase
35c3e8vA_
not modelled 61.9 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis
36c3hj8A_
not modelled 57.2 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure determination of catechol 1,2-dioxygenase from2 rhodococcus opacus 1cp in complex with 4-chlorocatechol
37c1tmxA_
not modelled 52.7 39 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase;
PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from2 nocardioides simplex 3e
38d2bura1
not modelled 46.2 33 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
39c2bpbA_
not modelled 44.8 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit a;
PDBTitle: sulfite dehydrogenase from starkeya novella
40c2r32A_
not modelled 44.8 29 PDB header:immune system
Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand
PDBTitle: crystal structure of human gitrl variant
41d1v8ha1
not modelled 44.5 14 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SoxZ-like
42c2ww8A_
not modelled 43.5 11 PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae
43c3cmgA_
not modelled 37.3 13 PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
44d1ulva2
not modelled 36.0 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
45c1bprA_
not modelled 35.8 16 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
46c3dwoX_
not modelled 35.3 11 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
47c3dpqE_
not modelled 35.2 15 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
48c1u00A_
not modelled 35.1 16 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
49c2vnvC_
not modelled 34.9 8 PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution
50d1ci3m2
not modelled 34.2 14 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
51d1dmha_
not modelled 33.1 24 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
52c3fn9B_
not modelled 31.9 13 PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
53c3n8eA_
not modelled 31.9 20 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
54d2dj4a1
not modelled 31.0 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
55c2xr4A_
not modelled 30.9 19 PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin;
PDBTitle: c-terminal domain of bc2l-c lectin from burkholderia cenocepacia
56c3rghA_
not modelled 29.9 27 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
57c3d33B_
not modelled 29.4 12 PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution
58d1dkza2
not modelled 28.2 17 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
59d1wlha1
not modelled 27.0 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
60c2op6A_
not modelled 26.8 15 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
61d2bp3a1
not modelled 26.7 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
62c3iswA_
not modelled 25.0 40 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
63d2vzsa4
not modelled 24.8 14 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
64d1edqa1
not modelled 24.8 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
65c3b9eA_
not modelled 24.6 11 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
66d2e9ia1
not modelled 23.9 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
67d2a9da1
not modelled 23.8 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Molybdenum-containing oxidoreductases-like dimerisation domain
68d2je8a4
not modelled 23.2 18 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
69c3pddA_
not modelled 22.6 21 PDB header:unknown function
Chain: A: PDB Molecule:glycoside hydrolase, family 9;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
70c2oxgE_
not modelled 22.3 18 PDB header:transport protein
Chain: E: PDB Molecule:soxz protein;
PDBTitle: the soxyz complex of paracoccus pantotrophus
71d1e2wa2
not modelled 21.7 22 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
72d2dmca1
not modelled 20.7 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
73c2ds4A_
not modelled 20.6 27 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 45;
PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45
74c1ug9A_
not modelled 20.5 26 PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
75c3dqgC_
not modelled 20.4 14 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
76d1uura3
not modelled 20.0 23 Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
77d2d7oa1
not modelled 19.8 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
78d1yuwa1
not modelled 19.7 14 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
79d2j3sa2
not modelled 19.7 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
80c2brqB_
not modelled 19.6 40 PDB header:structural protein
Chain: B: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
81d1smpi_
not modelled 19.5 13 Fold:Streptavidin-like
Superfamily:beta-Barrel protease inhibitors
Family:Metalloprotease inhibitor
82d2dmba1
not modelled 19.1 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
83c2qh8A_
not modelled 18.8 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961
84d1v05a_
not modelled 18.6 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
85d1qfha2
not modelled 18.2 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
86d1jz8a3
not modelled 18.2 16 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
87d2d7na1
not modelled 18.1 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
88d2diba1
not modelled 18.0 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
89d2diaa1
not modelled 17.8 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
90c2jxmB_
not modelled 17.8 21 PDB header:electron transport
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex
91d2w0pa1
not modelled 17.5 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
92d2cfea1
not modelled 17.4 14 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
93c1nkgA_
not modelled 16.9 14 PDB header:lyase
Chain: A: PDB Molecule:rhamnogalacturonase b;
PDBTitle: rhamnogalacturonan lyase from aspergillus aculeatus
94d2di9a1
not modelled 16.8 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
95c2jf1A_
not modelled 16.8 40 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide
96c3iswB_
not modelled 16.5 40 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
97c2w0pB_
not modelled 16.5 40 PDB header:cell adhesion
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide
98c2brqA_
not modelled 16.5 40 PDB header:structural protein
Chain: A: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
99d1qfha1
not modelled 16.2 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0