Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	I	I	L	G	I	D	P	G	S	R	V	T	G	Y	G	V	I	R	Q	V	G	R	Q	L	S	Y	L	G	S	G	C	I	R	T	K	V	D	D	L	P	S	R	L	K	L	I	Y	A	G	V	T	E	I	I	T	Q	F	Q
Secondary structure
SS confidence
Disorder		?	?																																				?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	D	Y	F	A	I	E	Q	V	F	M	A	K	N	A	D	S	A	L	K	L	G	Q	A	R	G	V	A	I	V	A	A	V	N	Q	E	L	P	V	F	E	Y	A	A	R	Q	V	K	Q	T	V	V	G	I	G	S	A	E	K	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Sequence		Q	V	Q	H	M	V	R	T	L	L	K	L	P	A	N	P	Q	A	D	A	A	D	A	L	A	I	A	I	T	H	C	H	V	S	Q	N	A	M	Q	M	S	E	S	R	L	N	L	A	R	G	R	L	R
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1hjr chain A Region: 2 - 159 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 100% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: RuvC resolvase Phyre2 PDB 1kcf chain A domain 2 Region: 2 - 156 Aligned: 152 Modelled: 155 Confidence: 98.5% Identity: 18% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Mitochondrial resolvase ydc2 catalytic domain Phyre2 PDB 3bzk chain A domain 5 Region: 3 - 80 Aligned: 73 Modelled: 75 Confidence: 98.3% Identity: 18% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Tex RuvX-like domain-like Phyre2 PDB 1nu0 chain A Region: 3 - 126 Aligned: 115 Modelled: 121 Confidence: 98.1% Identity: 17% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Putative Holliday junction resolvase RuvX Phyre2 PDB 1kcf chain B Region: 4 - 157 Aligned: 146 Modelled: 154 Confidence: 98.1% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2 Phyre2 PDB 1vhx chain A Region: 3 - 102 Aligned: 93 Modelled: 100 Confidence: 97.7% Identity: 17% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Putative Holliday junction resolvase RuvX Phyre2 PDB 2oce chain A Region: 3 - 66 Aligned: 58 Modelled: 61 Confidence: 97.5% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa Phyre2 PDB 1iv0 chain A Region: 3 - 66 Aligned: 56 Modelled: 64 Confidence: 96.9% Identity: 13% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Putative Holliday junction resolvase RuvX Phyre2 PDB 3r6m chain D Region: 2 - 103 Aligned: 93 Modelled: 102 Confidence: 95.4% Identity: 18% PDB header:hydrolase Chain: D: PDB Molecule:yeaz, resuscitation promoting factor; PDBTitle: crystal structure of vibrio parahaemolyticus yeaz Phyre2 PDB 3psi chain A Region: 4 - 66 Aligned: 59 Modelled: 63 Confidence: 95.4% Identity: 22% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) Phyre2 PDB 1zc6 chain A domain 1 Region: 1 - 62 Aligned: 59 Modelled: 62 Confidence: 95.3% Identity: 12% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 1okj chain A domain 1 Region: 4 - 107 Aligned: 95 Modelled: 104 Confidence: 95.2% Identity: 19% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: YeaZ-like Phyre2 PDB 3psf chain A Region: 4 - 66 Aligned: 59 Modelled: 63 Confidence: 95.2% Identity: 22% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) Phyre2 PDB 2ch5 chain D Region: 1 - 62 Aligned: 62 Modelled: 62 Confidence: 95.2% Identity: 18% PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine Phyre2 PDB 2e2p chain A Region: 1 - 69 Aligned: 65 Modelled: 69 Confidence: 94.9% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp Phyre2 PDB 1zc6 chain A Region: 1 - 62 Aligned: 61 Modelled: 62 Confidence: 94.3% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. Phyre2 PDB 2aa4 chain B Region: 1 - 72 Aligned: 65 Modelled: 71 Confidence: 94.3% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium Phyre2 PDB 3htv chain A Region: 2 - 66 Aligned: 62 Modelled: 65 Confidence: 93.6% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution Phyre2 PDB 2ch5 chain A domain 2 Region: 1 - 62 Aligned: 62 Modelled: 62 Confidence: 93.4% Identity: 18% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 1okj chain B Region: 3 - 103 Aligned: 92 Modelled: 101 Confidence: 93.2% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protease yeaz; PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma" Phyre2 1 d1hjra_ 2 d1kcfa2 3 d3bzka5 4 d1nu0a_ 5 c1kcfB_ 6 d1vhxa_ 7 c2oceA_ 8 d1iv0a_ 9 c3r6mD_ 10 c3psiA_ 11 d1zc6a1 12 d1okja1 13 c3psfA_ 14 c2ch5D_ 15 c2e2pA_ 16 c1zc6A_ 17 c2aa4B_ 18 c3htvA_ 19 d2ch5a2 20 c1okjB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1hjra_ 100.0 100 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:RuvC resolvase 2 d1kcfa2 98.5 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Mitochondrial resolvase ydc2 catalytic domain 3 d3bzka5 98.3 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 4 d1nu0a_ 98.1 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 5 c1kcfB_ 98.1 18 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2 6 d1vhxa_ 97.7 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 7 c2oceA_ 97.5 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 8 d1iv0a_ 96.9 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 9 c3r6mD_ 95.4 18 PDB header:hydrolase Chain: D: PDB Molecule:yeaz, resuscitation promoting factor; PDBTitle: crystal structure of vibrio parahaemolyticus yeaz 10 c3psiA_ 95.4 22 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 11 d1zc6a1 95.3 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 12 d1okja1 95.2 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 13 c3psfA_ 95.2 22 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) 14 c2ch5D_ 95.2 18 PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine 15 c2e2pA_ 94.9 20 PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp 16 c1zc6A_ 94.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. 17 c2aa4B_ 94.3 15 PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium 18 c3htvA_ 93.6 18 PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution 19 d2ch5a2 93.4 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 20 c1okjB_ 93.2 20 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protease yeaz; PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma" 21 c1xc3A_ not modelled 93.1 23 PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis 22 c3gbtA_ not modelled 93.0 21 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 23 c2qm1D_ not modelled 92.1 16 PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis 24 c3eo3B_ not modelled 91.5 15 PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein 25 d1saza1 not modelled 91.0 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 26 c2ivoC_ not modelled 90.1 15 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 27 c1zbsA_ not modelled 89.4 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg1100; PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18 28 c3mcpA_ not modelled 89.3 18 PDB header:transferase Chain: A: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution 29 c2w40C_ not modelled 89.1 16 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 30 c1e4gT_ not modelled 89.0 17 PDB header:bacterial cell division Chain: T: PDB Molecule:cell division protein ftsa; PDBTitle: ftsa (atp-bound form) from thermotoga maritima 31 c1z05A_ not modelled 89.0 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 32 d2aa4a1 not modelled 88.8 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 33 d1z05a3 not modelled 88.8 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 34 c2a6aB_ not modelled 88.5 11 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein tm0874; PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution 35 d2a6aa1 not modelled 88.5 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 36 c3enoB_ not modelled 88.4 17 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 37 d1z6ra2 not modelled 88.2 9 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 38 c2gupA_ not modelled 88.1 20 PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose 39 c2v7yA_ not modelled 87.9 30 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state 40 d2e1za1 not modelled 87.8 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 41 c3i8bA_ not modelled 87.5 9 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis 42 d2e8aa1 not modelled 87.3 31 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 43 d1huxa_ not modelled 86.8 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 44 c1z6rC_ not modelled 85.5 8 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 45 d2ap1a2 not modelled 83.9 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 46 c3r8eA_ not modelled 83.7 18 PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution 47 c3vgkB_ not modelled 83.7 20 PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus 48 c2ap1A_ not modelled 82.2 19 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 49 d2hoea3 not modelled 82.2 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 50 c3ezkB_ not modelled 82.1 15 PDB header:hydrolase Chain: B: PDB Molecule:dna packaging protein gp17; PDBTitle: bacteriophage t4 gp17 motor assembly based on crystal2 structures and cryo-em reconstructions 51 d2gupa1 not modelled 80.5 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 52 c3ifrB_ not modelled 77.0 15 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 53 c3gg4B_ not modelled 76.5 17 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 54 d1woqa1 not modelled 76.3 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 55 c1x3nA_ not modelled 75.8 18 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 56 c3h6eB_ not modelled 75.5 13 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans 57 c1woqB_ not modelled 74.0 15 PDB header:transferase Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase; PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution 58 d1dkgd1 not modelled 73.4 26 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 59 c2q2rA_ not modelled 73.1 11 PDB header:transferase Chain: A: PDB Molecule:glucokinase 1, putative; PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp 60 d1bupa1 not modelled 70.3 37 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 61 c3iucC_ not modelled 67.8 27 PDB header:chaperone Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp 62 c3p4iA_ not modelled 67.6 13 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium 63 c2zf5O_ not modelled 64.9 14 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 64 d1xc3a1 not modelled 63.3 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 65 c3hz6A_ not modelled 62.2 11 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 66 c1zxoB_ not modelled 59.9 19 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1; PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25. 67 c3en9B_ not modelled 59.5 18 PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein 68 c2d4wA_ not modelled 59.1 18 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 69 c2dpnB_ not modelled 58.7 14 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 70 c3flcX_ not modelled 55.7 10 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 71 c1hpmA_ not modelled 54.8 29 PDB header:hydrolase (acting on acid anhydrides) Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site 72 c2nlxA_ not modelled 53.8 14 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase 73 c2cgkB_ not modelled 53.5 17 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 74 c1xupO_ not modelled 52.8 16 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol 75 c2v7zA_ not modelled 52.7 29 PDB header:chaperone Chain: A: PDB Molecule:heat shock cognate 71 kda protein; PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state 76 c3g25B_ not modelled 52.5 20 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 77 c3ezwD_ not modelled 51.0 13 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 78 c1glbG_ not modelled 51.0 13 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 79 d1q18a1 not modelled 50.2 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 80 c3c6aA_ not modelled 47.8 12 PDB header:viral protein Chain: A: PDB Molecule:terminase large subunit; PDBTitle: crystal structure of the rb49 gp17 nuclease domain 81 c2x3mA_ not modelled 47.5 25 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein orf239; PDBTitle: crystal structure of hypothetical protein orf239 from pyrobaculum2 spherical virus 82 c1dkgD_ not modelled 47.0 22 PDB header:complex (hsp24/hsp70) Chain: D: PDB Molecule:molecular chaperone dnak; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak 83 c1jcgA_ not modelled 46.6 28 PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp 84 c2khoA_ not modelled 46.2 25 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate 85 c3h1qB_ not modelled 46.1 13 PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans 86 d2p3ra1 not modelled 45.9 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 87 d1g99a1 not modelled 45.1 31 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 88 c1mwmA_ not modelled 44.5 14 PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form 89 d1u6za2 not modelled 42.4 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 90 c2hoeA_ not modelled 41.4 15 PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution 91 c3jvpA_ not modelled 40.6 15 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 92 d1ig8a1 not modelled 39.3 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 93 d1bdga1 not modelled 39.1 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 94 c3n4pA_ not modelled 38.7 15 PDB header:dna binding protein Chain: A: PDB Molecule:terminase subunit ul89 protein; PDBTitle: human cytomegalovirus terminase nuclease domain 95 d1t6ca1 not modelled 34.9 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 96 c2fsnB_ not modelled 33.9 27 PDB header:structural protein Chain: B: PDB Molecule:hypothetical protein ta0583; PDBTitle: crystal structure of ta0583, an archaeal actin homolog, complex with2 adp 97 d1zbsa2 not modelled 33.3 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 98 d1r59o1 not modelled 32.5 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 99 c3khyA_ not modelled 31.7 13 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 100 d1sz2a1 not modelled 31.2 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 101 d2ewsa1 not modelled 29.4 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 102 c1t6dB_ not modelled 28.6 17 PDB header:hydrolase Chain: B: PDB Molecule:exopolyphosphatase; PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant 103 c3n4qA_ not modelled 28.6 15 PDB header:dna binding protein Chain: A: PDB Molecule:terminase subunit ul89 protein; PDBTitle: human cytomegalovirus terminase nuclease domain, mn soaked 104 c1bdgA_ not modelled 28.2 11 PDB header:hexokinase Chain: A: PDB Molecule:hexokinase; PDBTitle: hexokinase from schistosoma mansoni complexed with glucose 105 c2d0oA_ not modelled 27.1 14 PDB header:chaperone Chain: A: PDB Molecule:diol dehydratase-reactivating factor large PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+ 106 c1tuuA_ not modelled 25.9 31 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 107 d1jcea1 not modelled 25.8 36 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 108 c1sazA_ not modelled 25.0 16 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 109 c2iirJ_ not modelled 24.4 36 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 110 c3bf1C_ not modelled 24.2 19 PDB header:transferase Chain: C: PDB Molecule:type iii pantothenate kinase; PDBTitle: type iii pantothenate kinase from thermotoga maritima2 complexed with pantothenate and adp 111 c2ychA_ not modelled 23.9 11 PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0