PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1kcfB_

Fold library id	PDB Header	Molecule	Title
c1kcfB_	PDB header: hydrolase	Chain: B: PDB Molecule: hypothetical 30.2 kd protein c25g10.02 in	PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2

Links to external resources
Added to library: Tue Mar 16 13:48:21 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K L S F L Q H I C K L T G L S R S E L L R R I V D S P I Y P T S R V L G I D L G I K N F S Y C F A S Q N E D S K V I I H N W S V E N L T E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T S
S S
S S S
T T S
T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N G L D I Q W T E D F Q P S S M A D L S I Q L F N T L H E K F N P H V I L M E R Q R Y E W T L R V N M L E S M L Y A L H Y A E K R N S I E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K I Q Y P F L L S L S P K S T Y S Y W A S V L N S R V Q M V K E L I D G Q K I L F E N E E A L Y K W N N G E F K K D D M A D S A L I A S G W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T S S S

. . . . . . . . . 220 . . . . . . . .

Sequence M R W Q A Q L K H Y R N F C K Q F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	L	S	F	L	Q	H	I	C	K	L	T	G	L	S	R	S	E	L	L	R	R	I	V	D	S	P	I	Y	P	T	S	R	V	L	G	I	D	L	G	I	K	N	F	S	Y	C	F	A	S	Q	N	E	D	S	K	V	I	I	H	N	W	S	V	E	N	L	T	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T												T	S						S	S								S	S	S										T	T	S												T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	G	L	D	I	Q	W	T	E	D	F	Q	P	S	S	M	A	D	L	S	I	Q	L	F	N	T	L	H	E	K	F	N	P	H	V	I	L	M	E	R	Q	R	Y	E	W	T	L	R	V	N	M	L	E	S	M	L	Y	A	L	H	Y	A	E	K	R	N	S	I	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T									S																						S																																				T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	I	Q	Y	P	F	L	L	S	L	S	P	K	S	T	Y	S	Y	W	A	S	V	L	N	S	R	V	Q	M	V	K	E	L	I	D	G	Q	K	I	L	F	E	N	E	E	A	L	Y	K	W	N	N	G	E	F	K	K	D	D	M	A	D	S	A	L	I	A	S	G	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T											T	T																							T	T	S				S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Sequence	M	R	W	Q	A	Q	L	K	H	Y	R	N	F	C	K	Q	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T