Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	V	K	S	I	T	R	E	S	W	I	L	S	T	F	P	E	W	G	S	W	L	N	E	E	I	E	Q	E	Q	V	A	P	G	T	F	A	M	W	W	L	G	C	T	G	I	W	L	K	S	E	G	G	T	N	V	C	V
Secondary structure
SS confidence
Disorder		?	?											?	?	?				?						?		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	F	W	C	G	T	G	K	Q	S	H	G	N	P	L	M	K	Q	G	H	Q	M	Q	R	M	A	G	V	K	K	L	Q	P	N	L	R	T	T	P	F	V	L	D	P	F	A	I	R	Q	I	D	A	V	L	A	T	H	D	H	N
Secondary structure
SS confidence
Disorder									?	?	?	?						?	?	?	?	?		?	?					?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	H	I	D	V	N	V	A	A	A	V	M	Q	N	C	A	D	D	V	P	F	I	G	P	K	T	C	V	D	L	W	I	G	W	G	V	P	K	E	R	C	I	V	V	K	P	G	D	V	V	K	V	K	D	I	E	I	H	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	A	F	D	R	T	A	L	I	T	L	P	A	D	Q	K	A	A	G	V	L	P	D	G	M	D	D	R	A	V	N	Y	L	F	K	T	P	G	G	S	L	Y	H	S	G	D	S	H	Y	S	N	Y	Y	A	K	H	G	N	E	H
Secondary structure
SS confidence
Disorder																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	I	D	V	A	L	G	S	Y	G	E	N	P	R	G	I	T	D	K	M	T	S	A	D	M	L	R	M	G	E	A	L	N	A	K	V	V	I	P	F	H	H	D	I	W	S	N	F	Q	A	D	P	Q	E	I	R	V	L	W	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Sequence		M	K	K	D	R	L	K	Y	G	F	K	P	F	I	W	Q	V	G	G	K	F	T	W	P	L	D	K	D	N	F	E	Y	H	Y	P	R	G	F	D	D	C	F	T	I	E	P	D	L	P	F	K	S	F	L
Secondary structure
SS confidence
Disorder						?																							?																						?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3bv6 chain D Region: 2 - 354 Aligned: 353 Modelled: 353 Confidence: 100.0% Identity: 70% PDB header:hydrolase Chain: D: PDB Molecule:metal-dependent hydrolase; PDBTitle: crystal structure of uncharacterized metallo protein from vibrio2 cholerae with beta-lactamase like fold Phyre2 PDB 2wyl chain F Region: 1 - 338 Aligned: 302 Modelled: 300 Confidence: 100.0% Identity: 98% PDB header:hydrolase Chain: F: PDB Molecule:l-ascorbate-6-phosphate lactonase ulag; PDBTitle: apo structure of a metallo-b-lactamase Phyre2 PDB 3rpc chain D Region: 37 - 323 Aligned: 246 Modelled: 257 Confidence: 100.0% Identity: 13% PDB header:hydrolase Chain: D: PDB Molecule:possible metal-dependent hydrolase; PDBTitle: the crystal structure of a possible metal-dependent hydrolase from2 veillonella parvula dsm 2008 Phyre2 PDB 1vjn chain A Region: 39 - 303 Aligned: 167 Modelled: 173 Confidence: 100.0% Identity: 26% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Hypothetical protein TM0207 Phyre2 PDB 3kl7 chain A Region: 31 - 302 Aligned: 203 Modelled: 227 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent hydrolase; PDBTitle: crystal structure of putative metal-dependent hydrolase2 (yp_001302908.1) from parabacteroides distasonis atcc 8503 at 2.30 a3 resolution Phyre2 PDB 1zkp chain D Region: 33 - 322 Aligned: 226 Modelled: 238 Confidence: 99.9% Identity: 19% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ba1088; PDBTitle: 1.5a resolution crystal structure of a metallo beta lactamase family2 protein, the elac homolgue of bacillus anthracis, a putative3 ribonuclease Phyre2 PDB 1zkp chain A domain 1 Region: 39 - 322 Aligned: 220 Modelled: 232 Confidence: 99.9% Identity: 19% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: YhfI-like Phyre2 PDB 3g1p chain A Region: 37 - 283 Aligned: 189 Modelled: 191 Confidence: 99.9% Identity: 19% PDB header:lyase Chain: A: PDB Molecule:protein phnp; PDBTitle: crystals structure of phnp from e.coli k-12 Phyre2 PDB 1y44 chain A domain 1 Region: 40 - 325 Aligned: 238 Modelled: 256 Confidence: 99.9% Identity: 19% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: RNase Z-like Phyre2 PDB 3zwf chain A Region: 39 - 283 Aligned: 193 Modelled: 194 Confidence: 99.8% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:zinc phosphodiesterase elac protein 1; PDBTitle: crystal structure of human trnase z, short form (elac1). Phyre2 PDB 3md7 chain A Region: 34 - 302 Aligned: 207 Modelled: 217 Confidence: 99.8% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase-like; PDBTitle: crystal structure of a beta-lactamase-like protein bound to gmp from2 brucella melitensis Phyre2 PDB 2cbn chain A domain 1 Region: 39 - 303 Aligned: 230 Modelled: 235 Confidence: 99.7% Identity: 17% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: RNase Z-like Phyre2 PDB 2i7t chain A domain 1 Region: 37 - 280 Aligned: 193 Modelled: 198 Confidence: 99.7% Identity: 18% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: beta-CASP RNA-metabolising hydrolases Phyre2 PDB 3zq4 chain C Region: 44 - 309 Aligned: 217 Modelled: 237 Confidence: 99.7% Identity: 17% PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 Phyre2 PDB 2az4 chain A Region: 36 - 283 Aligned: 222 Modelled: 228 Confidence: 99.7% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ef2904; PDBTitle: crystal structure of a protein of unknown function from enterococcus2 faecalis v583 Phyre2 PDB 3bk2 chain A Region: 44 - 309 Aligned: 221 Modelled: 245 Confidence: 99.6% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:metal dependent hydrolase; PDBTitle: crystal structure analysis of the rnase j/ump complex Phyre2 PDB 1k07 chain A Region: 40 - 307 Aligned: 207 Modelled: 213 Confidence: 99.6% Identity: 14% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Zn metallo-beta-lactamase Phyre2 PDB 2dkf chain A domain 1 Region: 44 - 280 Aligned: 185 Modelled: 190 Confidence: 99.6% Identity: 22% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: beta-CASP RNA-metabolising hydrolases Phyre2 PDB 2xr1 chain A Region: 28 - 280 Aligned: 202 Modelled: 208 Confidence: 99.6% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Phyre2 PDB 2xr1 chain B Region: 28 - 280 Aligned: 206 Modelled: 211 Confidence: 99.6% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Phyre2 1 c3bv6D_ 2 c2wylF_ 3 c3rpcD_ 4 d1vjna_ 5 c3kl7A_ 6 c1zkpD_ 7 d1zkpa1 8 c3g1pA_ 9 d1y44a1 10 c3zwfA_ 11 c3md7A_ 12 d2cbna1 13 d2i7ta1 14 c3zq4C_ 15 c2az4A_ 16 c3bk2A_ 17 d1k07a_ 18 d2dkfa1 19 c2xr1A_ 20 c2xr1B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3bv6D_ 100.0 70 PDB header:hydrolase Chain: D: PDB Molecule:metal-dependent hydrolase; PDBTitle: crystal structure of uncharacterized metallo protein from vibrio2 cholerae with beta-lactamase like fold 2 c2wylF_ 100.0 98 PDB header:hydrolase Chain: F: PDB Molecule:l-ascorbate-6-phosphate lactonase ulag; PDBTitle: apo structure of a metallo-b-lactamase 3 c3rpcD_ 100.0 13 PDB header:hydrolase Chain: D: PDB Molecule:possible metal-dependent hydrolase; PDBTitle: the crystal structure of a possible metal-dependent hydrolase from2 veillonella parvula dsm 2008 4 d1vjna_ 100.0 26 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Hypothetical protein TM0207 5 c3kl7A_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent hydrolase; PDBTitle: crystal structure of putative metal-dependent hydrolase2 (yp_001302908.1) from parabacteroides distasonis atcc 8503 at 2.30 a3 resolution 6 c1zkpD_ 99.9 19 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ba1088; PDBTitle: 1.5a resolution crystal structure of a metallo beta lactamase family2 protein, the elac homolgue of bacillus anthracis, a putative3 ribonuclease 7 d1zkpa1 99.9 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:YhfI-like 8 c3g1pA_ 99.9 19 PDB header:lyase Chain: A: PDB Molecule:protein phnp; PDBTitle: crystals structure of phnp from e.coli k-12 9 d1y44a1 99.9 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:RNase Z-like 10 c3zwfA_ 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:zinc phosphodiesterase elac protein 1; PDBTitle: crystal structure of human trnase z, short form (elac1). 11 c3md7A_ 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase-like; PDBTitle: crystal structure of a beta-lactamase-like protein bound to gmp from2 brucella melitensis 12 d2cbna1 99.7 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:RNase Z-like 13 d2i7ta1 99.7 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 14 c3zq4C_ 99.7 17 PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 15 c2az4A_ 99.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ef2904; PDBTitle: crystal structure of a protein of unknown function from enterococcus2 faecalis v583 16 c3bk2A_ 99.6 17 PDB header:hydrolase Chain: A: PDB Molecule:metal dependent hydrolase; PDBTitle: crystal structure analysis of the rnase j/ump complex 17 d1k07a_ 99.6 14 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 18 d2dkfa1 99.6 22 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 19 c2xr1A_ 99.6 20 PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei 20 c2xr1B_ 99.6 18 PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei 21 d1xtoa_ not modelled 99.6 13 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Coenzyme PQQ synthesis protein B, PqqB 22 c3af5A_ not modelled 99.5 17 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii 23 d2e7ya1 not modelled 99.5 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:RNase Z-like 24 c2ycbA_ not modelled 99.5 18 PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor; PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus 25 c2p4zA_ not modelled 99.5 21 PDB header:hydrolase Chain: A: PDB Molecule:metal-dependent hydrolases of the beta-lactamase PDBTitle: a ferredoxin-like metallo-beta-lactamase superfamily protein from2 thermoanaerobacter tengcongensis 26 c1vmeB_ not modelled 99.5 25 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 27 c3adrA_ not modelled 99.4 18 PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein st1585; PDBTitle: the first crystal structure of an archaeal metallo-beta-lactamase2 superfamily protein; st1585 from sulfolobus tokodaii 28 c2q9uB_ not modelled 99.3 18 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 29 d2az4a1 not modelled 99.3 23 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 30 c1ychD_ not modelled 99.3 19 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 31 c1p9eA_ not modelled 99.3 17 PDB header:hydrolase Chain: A: PDB Molecule:methyl parathion hydrolase; PDBTitle: crystal structure analysis of methyl parathion hydrolase from2 pseudomonas sp wbc-3 32 d1p9ea_ not modelled 99.3 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Methyl parathion hydrolase 33 d1vmea2 not modelled 99.3 25 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 34 c2ohiB_ not modelled 99.3 19 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 35 d2aioa1 not modelled 99.3 15 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 36 c1e5dA_ not modelled 99.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 37 c3lvzA_ not modelled 99.3 14 PDB header:hydrolase Chain: A: PDB Molecule:blr6230 protein; PDBTitle: new refinement of the crystal structure of bjp-1, a subclass b32 metallo-beta-lactamase of bradyrhizobium japonicum 38 d1m2xa_ not modelled 99.2 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 39 d2gmna1 not modelled 99.2 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 40 c3hnnD_ not modelled 99.2 13 PDB header:oxidoreductase Chain: D: PDB Molecule:putative diflavin flavoprotein a 5; PDBTitle: crystal structure of putative diflavin flavoprotein a 5 (fragment 1-2 254) from nostoc sp. pcc 7120, northeast structural genomics3 consortium target nsr435a 41 d1znba_ not modelled 99.2 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 42 d1ycga2 not modelled 99.2 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 43 d2i7xa1 not modelled 99.1 13 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 44 c2i7xA_ not modelled 99.1 13 PDB header:rna binding protein, protein binding Chain: A: PDB Molecule:protein cft2; PDBTitle: structure of yeast cpsf-100 (ydh1p) 45 c3tp9B_ not modelled 99.1 21 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein; PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains 46 c2r2dC_ not modelled 99.1 14 PDB header:hydrolase Chain: C: PDB Molecule:zn-dependent hydrolases; PDBTitle: structure of a quorum-quenching lactonase (aiib) from agrobacterium2 tumefaciens 47 c2br6A_ not modelled 99.1 15 PDB header:hydrolase Chain: A: PDB Molecule:aiia-like protein; PDBTitle: crystal structure of quorum-quenching n-acyl homoserine2 lactone lactonase 48 c3l6nA_ not modelled 99.0 18 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystal structure of metallo-beta-lactamase ind-7 49 c2zo4A_ not modelled 99.0 18 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase family protein; PDBTitle: crystal structure of metallo-beta-lactamase family protein ttha14292 from thermus thermophilus hb8 50 c3r2uC_ not modelled 99.0 15 PDB header:hydrolase Chain: C: PDB Molecule:metallo-beta-lactamase family protein; PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col 51 c3eshB_ not modelled 99.0 17 PDB header:hydrolase Chain: B: PDB Molecule:protein similar to metal-dependent hydrolase; PDBTitle: crystal structure of a probable metal-dependent hydrolase2 from staphylococcus aureus. northeast structural genomics3 target zr314 52 c2bibA_ not modelled 99.0 16 PDB header:hydrolase Chain: A: PDB Molecule:teichoic acid phosphorylcholine esterase/ choline binding PDBTitle: crystal structure of the complete modular teichioic acid2 phosphorylcholine esterase pce (cbpe) from streptococcus3 pneumoniae 53 d1ko3a_ not modelled 99.0 23 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 54 d2q0ia1 not modelled 99.0 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:PqsE-like 55 c2fhxB_ not modelled 99.0 16 PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:spm-1; PDBTitle: pseudomonas aeruginosa spm-1 metallo-beta-lactamase 56 d2cfua2 not modelled 98.9 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like 57 c2gcuD_ not modelled 98.9 21 PDB header:hydrolase Chain: D: PDB Molecule:putative hydroxyacylglutathione hydrolase 3; PDBTitle: x-ray structure of gene product from arabidopsis thaliana2 at1g53580 58 c3aj3A_ not modelled 98.9 13 PDB header:hydrolase Chain: A: PDB Molecule:4-pyridoxolactonase; PDBTitle: crystal structure of selenomethionine substituted 4-pyridoxolactonase2 from mesorhizobium loti 59 d1xm8a_ not modelled 98.9 24 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 60 c3spuB_ not modelled 98.8 16 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure 61 c2cfuA_ not modelled 98.8 17 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 62 c2yz3B_ not modelled 98.8 23 PDB header:hydrolase Chain: B: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystallographic investigation of inhibition mode of the2 vim-2 metallo-beta-lactamase from pseudomonas aeruginosa3 with mercaptocarboxylate inhibitor 63 d1e5da2 not modelled 98.8 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 64 d1qh5a_ not modelled 98.8 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 65 d1mqoa_ not modelled 98.8 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 66 c2p18A_ not modelled 98.8 19 PDB header:hydrolase Chain: A: PDB Molecule:glyoxalase ii; PDBTitle: crystal structure of the leishmania infantum glyoxalase ii 67 d2qeda1 not modelled 98.8 23 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 68 c3h3eA_ not modelled 98.7 12 PDB header:structural genomics, metal binding prote Chain: A: PDB Molecule:uncharacterized protein tm1679; PDBTitle: crystal structure of tm1679, a metal-dependent hydrolase of2 the beta-lactamase superfamily 69 c3rkjA_ not modelled 98.7 17 PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase ndm-1; PDBTitle: crystal structure of new delhi metallo-beta-lactamase-1 from2 klebsiella pnueumoniae 70 d1jjta_ not modelled 98.7 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 71 d1wraa1 not modelled 98.5 14 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Pce catalytic domain-like 72 c3sd9B_ not modelled 98.5 15 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of serratia fonticola sfh-i: source of the2 nucleophile in the catalytic mechanism of mono-zinc metallo-beta-3 lactamases 73 d1x8ha_ not modelled 98.4 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 74 d1ztca1 not modelled 98.4 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:TM0894-like 75 c2zwrA_ not modelled 98.2 23 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase superfamily protein; PDBTitle: crystal structure of ttha1623 from thermus thermophilus hb8 76 c2xf4A_ not modelled 98.2 23 PDB header:hydrolase Chain: A: PDB Molecule:hydroxyacylglutathione hydrolase; PDBTitle: crystal structure of salmonella enterica serovar2 typhimurium ycbl 77 d2p97a1 not modelled 97.8 14 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Ava3068-like 78 c3no4A_ not modelled 79.4 19 PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution 79 d1vjza_ not modelled 61.7 23 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 80 c2wvsD_ not modelled 59.2 21 PDB header:hydrolase Chain: D: PDB Molecule:alpha-l-fucosidase; PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant 81 c3gzaB_ not modelled 55.4 11 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution 82 c3lubE_ not modelled 55.2 15 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 83 c1hl8B_ not modelled 54.5 28 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase 84 c3qi7A_ not modelled 54.2 11 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 85 c3mo4B_ not modelled 52.7 20 PDB header:hydrolase Chain: B: PDB Molecule:alpha-1,3/4-fucosidase; PDBTitle: the crystal structure of an alpha-(1-3,4)-fucosidase from2 bifidobacterium longum subsp. infantis atcc 15697 86 c3eypB_ not modelled 52.6 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase from bacteroides2 thetaiotaomicron 87 c3m0zD_ not modelled 51.4 19 PDB header:lyase Chain: D: PDB Molecule:putative aldolase; PDBTitle: crystal structure of putative aldolase from klebsiella2 pneumoniae. 88 d7a3ha_ not modelled 50.1 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 89 d1hl9a2 not modelled 50.0 29 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Putative alpha-L-fucosidase, catalytic domain 90 d1ccwa_ not modelled 49.8 16 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 91 d1v7za_ not modelled 42.0 15 Fold:Creatininase Superfamily:Creatininase Family:Creatininase 92 d2qrra1 not modelled 37.8 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 93 c2we7A_ not modelled 37.4 24 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis rv0376c2 homologue from mycobacterium smegmatis 94 d2qswa1 not modelled 34.6 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 95 d1t0ba_ not modelled 30.0 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like 96 c3m6yA_ not modelled 29.9 19 PDB header:lyase Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase; PDBTitle: structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at2 1.45 a resolution. 97 c3muxB_ not modelled 29.8 20 PDB header:lyase Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase; PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a 98 d2a21a1 not modelled 28.7 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 99 c3cqkB_ not modelled 28.1 12 PDB header:isomerase Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae; PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate 100 d1tdha3 not modelled 25.9 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 101 c1zz0C_ not modelled 25.3 13 PDB header:hydrolase Chain: C: PDB Molecule:histone deacetylase-like amidohydrolase; PDBTitle: crystal structure of a hdac-like protein with acetate bound 102 c1xuzA_ not modelled 22.0 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 103 c3qr3B_ not modelled 21.9 11 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase eg-ii; PDBTitle: crystal structure of cel5a (eg2) from hypocrea jecorina (trichoderma2 reesei) 104 c2jepB_ not modelled 20.5 12 PDB header:hydrolase Chain: B: PDB Molecule:xyloglucanase; PDBTitle: native family 5 xyloglucanase from paenibacillus pabuli

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0