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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2xr1A_

Fold library idPDB HeaderMoleculeTitle
c2xr1A_PDB header: hydrolaseChain: A: PDB Molecule: cleavage and polyadenylation specificity factor 100 kdPDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei


Added to library: Thu Oct 21 16:24:29 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IEDVLLDLKHKIEKNLPAGVTITDVEFEGPQLVLYTEEPRKFADDGNIIRNLAKELRTRIAMRPDPRVLA
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Known secondary structure (DSSP)
S
TT




TTS

TTS

GGG

 .........80.........90.........100.........110.........120.........130.........140
Sequence TPEDSISIIEEVVPKESVISSYYFDPDSGEVIIEAEKPGLVIGKHGATLREITKQIGWIPKVVRTPPIKS
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Known secondary structure (DSSP)
S
GGG

TTTSSS
SSS
S

SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence RTVKNIREFMRNNLKERKEILKTVGRKIHRECTSKDQWVRVTALGGCKEVGRSCFLLSTPESRILIDCGV
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Known secondary structure (DSSP) TTS



S




SSSSB


SS




 .........220.........230.........240.........250.........260.........270.........280
Sequence NVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYID
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Known secondary structure (DSSP) B
SS
SS



TTSTTT
SGGG



SS
TTTT

S

 .........290.........300.........310.........320.........330.........340.........350
Sequence VAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGD
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Known secondary structure (DSSP) T



S
T

TT

TT
SSSTT
TTTT

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence YKYEKTRLFDPAVNKFPRVETVISEATYGNANAFQPALKDAEKHLQMVVIAVIPAFAVGRSQEVMIVLEE
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Known secondary structure (DSSP)

SS

SS





B
S

S
TT
STT








TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence SIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNNDLRKLIPFLSECFKPVDHEARQKIQPCVILATSGMM
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Known secondary structure (DSSP) TSS



SS
GGGS


TT
TT





S
TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence NGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEMLKMNMEVQVVDGFSGHSDRRQLMEYVKR
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Known secondary structure (DSSP) SSSSS
TT

S


TT
TT







S



S
S

T
 .........570.........580.........590.........600.....
Sequence MQPRPERVFTEHGDEKACVDLASSVYKKLKIETRALTNLETVRLL
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Known secondary structure (DSSP)
BS

SSS




TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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