PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3rkjA_

Fold library id	PDB Header	Molecule	Title
c3rkjA_	PDB header: hydrolase	Chain: A: PDB Molecule: beta-lactamase ndm-1;	PDBTitle: crystal structure of new delhi metallo-beta-lactamase-1 from2 klebsiella pnueumoniae

Links to external resources
Added to library: Sat May 21 09:58:02 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R F G D L V F R Q L A P N V W Q H T S Y L D M P G F G A V A S N G L I V R D G G R V L V V D T A W T D D Q T A Q I L N W I K Q E I N L P V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T S
T T
S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L A V V T H A H Q D K M G G M D A L H A A G I A T Y A N A L S N Q L A P Q E G M V A A Q H S L T F A A N G W V E P A T A P N F G P L K V F Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S T T T T
G G G G T
S
B
T T S B B
T T T S T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P G P G H T S D N I T V G I D G T D I A F G G C L I K D S K A K S L G N L G D A D T E H Y A A S A R A F G A A F P K A S M I V M S H S A P D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S S
T T T T T S
T T
S S
T T
T T T S T T
S S S
B

. . . . . . . . . 220 . . . . . .

Sequence S R A A I T H T A R M A D K L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	F	G	D	L	V	F	R	Q	L	A	P	N	V	W	Q	H	T	S	Y	L	D	M	P	G	F	G	A	V	A	S	N	G	L	I	V	R	D	G	G	R	V	L	V	V	D	T	A	W	T	D	D	Q	T	A	Q	I	L	N	W	I	K	Q	E	I	N	L	P	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S								T	T											T	T	S													T	T									S	S															T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	A	V	V	T	H	A	H	Q	D	K	M	G	G	M	D	A	L	H	A	A	G	I	A	T	Y	A	N	A	L	S	N	Q	L	A	P	Q	E	G	M	V	A	A	Q	H	S	L	T	F	A	A	N	G	W	V	E	P	A	T	A	P	N	F	G	P	L	K	V	F	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S	S					T	T							T	T													G	G	G	G	T					S					B		T	T	S	B	B		T	T	T	S	T	T		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	G	P	G	H	T	S	D	N	I	T	V	G	I	D	G	T	D	I	A	F	G	G	C	L	I	K	D	S	K	A	K	S	L	G	N	L	G	D	A	D	T	E	H	Y	A	A	S	A	R	A	F	G	A	A	F	P	K	A	S	M	I	V	M	S	H	S	A	P	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S	S	S	S							T	T	T	T						T	S				T	T		S	S					T	T			T	T	T												S	T	T							S	S	S			B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	S	R	A	A	I	T	H	T	A	R	M	A	D	K	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T												T	T