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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2xr1B_

Fold library idPDB HeaderMoleculeTitle
c2xr1B_PDB header: hydrolaseChain: B: PDB Molecule: cleavage and polyadenylation specificity factor 100 kdPDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei


Added to library: Tue Oct 19 11:49:20 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MPIEDVLLDLKHKIEKNLPAGVTITDVEFEGPQLVLYTEEPRKFADDGNIIRNLAKELRTRIAMRPDPPE
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Known secondary structure (DSSP)
TTTTS
TT




TTS

TTS



 .........80.........90.........100.........110.........120.........130.........140
Sequence DSISIIEEVVSVISSYYFDSGEVIIEAEKPGLVIGATLREITKQIGWIPKVVRTPPIKSRTVKNIREFMR
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SS


S

SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence NNLKERKEILKTVGRKIHRECTSKDQWVRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPY
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Known secondary structure (DSSP) TTS



S




SSSSS


SS






SS
SS



 .........220.........230.........240.........250.........260.........270.........280
Sequence LYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPY
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Known secondary structure (DSSP) TTSTTT
SGGG



SS
TTTT

S

T



S
 .........290.........300.........310.........320.........330.........340.........350
Sequence ESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDP
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Known secondary structure (DSSP)
TT

TT

TT
SSSTT
TTTT

S


S

SS


 .........360.........370.........380.........390.........400.........410.........420
Sequence AVNKFPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVIPAFAVGRSQEVMIVLEESIR
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Known secondary structure (DSSP)


B
S

S
TT
STT




TT



TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence KGLIPEVPVYLDGMIWEATAIHATHPEYLNNDLRKLINPFLSECFKPVDSHEARQKIIQNPQPCVILATS
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Known secondary structure (DSSP) TTSS
S

SS
GGGS


GGG
TT
SS

S
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence GMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEIPMMLKMNMEVQVVDGFSGHSDRRQL
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Known secondary structure (DSSP) TTSSSSTT
TT

S


TT
TT






S



S
S

 .........570.........580.........590.........600.........610.
Sequence MEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRALTNLETVRLL
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Known secondary structure (DSSP) T
BS

SSS




TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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