Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	S	W	Y	L	L	Y	C	K	R	G	Q	L	Q	R	A	Q	E	H	L	E	R	Q	A	V	N	C	L	A	P	M	I	T	L	E	K	I	V	R	G	K	R	T	A	V	S	E	P	L	F	P	N	Y	L	F	V	E	F	D
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	E	V	I	H	T	T	T	I	N	A	T	R	G	V	S	H	F	V	R	F	G	A	S	P	A	I	V	P	S	A	V	I	H	Q	L	S	V	Y	K	P	K	D	I	V	D	P	A	T	P	Y	P	G	D	K	V	I	I	T	E
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Sequence		G	A	F	E	G	F	Q	A	I	F	T	E	P	D	G	E	A	R	S	M	L	L	L	N	L	I	N	K	E	I	K	H	S	V	K	N	T	E	F	R	K	L
Secondary structure
SS confidence
Disorder																																							?				?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1m1g chain B Region: 2 - 162 Aligned: 161 Modelled: 161 Confidence: 100.0% Identity: 21% PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) Phyre2 PDB 2oug chain C Region: 2 - 155 Aligned: 140 Modelled: 140 Confidence: 100.0% Identity: 98% PDB header:transcription Chain: C: PDB Molecule:transcriptional activator rfah; PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution Phyre2 PDB 2xhc chain A Region: 27 - 162 Aligned: 131 Modelled: 135 Confidence: 100.0% Identity: 23% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) Phyre2 PDB 3p8b chain B Region: 3 - 162 Aligned: 141 Modelled: 160 Confidence: 99.9% Identity: 21% PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Phyre2 PDB 2k06 chain A Region: 2 - 107 Aligned: 106 Modelled: 106 Confidence: 99.9% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg Phyre2 PDB 1nz8 chain A Region: 2 - 101 Aligned: 100 Modelled: 100 Confidence: 99.9% Identity: 26% Fold: Ferredoxin-like Superfamily: N-utilization substance G protein NusG, N-terminal domain Family: N-utilization substance G protein NusG, N-terminal domain Phyre2 PDB 1m1h chain A domain 2 Region: 2 - 102 Aligned: 95 Modelled: 95 Confidence: 99.9% Identity: 18% Fold: Ferredoxin-like Superfamily: N-utilization substance G protein NusG, N-terminal domain Family: N-utilization substance G protein NusG, N-terminal domain Phyre2 PDB 1npp chain A domain 2 Region: 109 - 162 Aligned: 54 Modelled: 54 Confidence: 99.4% Identity: 19% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 1nz9 chain A Region: 109 - 161 Aligned: 53 Modelled: 53 Confidence: 99.4% Identity: 21% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 2jvv chain A Region: 106 - 161 Aligned: 56 Modelled: 56 Confidence: 99.4% Identity: 20% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain Phyre2 PDB 2kvq chain G Region: 106 - 161 Aligned: 56 Modelled: 56 Confidence: 99.4% Identity: 20% PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex Phyre2 PDB 3ewg chain A Region: 5 - 96 Aligned: 77 Modelled: 92 Confidence: 97.2% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:putative transcription antitermination protein nusg; PDBTitle: crystal structure of the n-terminal domain of nusg (ngn) from2 methanocaldococcus jannaschii Phyre2 PDB 2e6z chain A Region: 103 - 161 Aligned: 56 Modelled: 58 Confidence: 97.0% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 2exu chain A Region: 5 - 98 Aligned: 72 Modelled: 77 Confidence: 96.6% Identity: 11% PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain Phyre2 PDB 2do3 chain A domain 1 Region: 109 - 152 Aligned: 43 Modelled: 44 Confidence: 96.1% Identity: 26% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: SPT5 KOW domain-like Phyre2 PDB 3h7h chain B Region: 5 - 99 Aligned: 75 Modelled: 78 Confidence: 95.9% Identity: 23% PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt5; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) Phyre2 PDB 2ckk chain A Region: 101 - 162 Aligned: 62 Modelled: 62 Confidence: 95.8% Identity: 11% PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. Phyre2 PDB 2e70 chain A Region: 112 - 153 Aligned: 41 Modelled: 42 Confidence: 95.6% Identity: 20% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 1vqo chain T domain 1 Region: 109 - 159 Aligned: 51 Modelled: 51 Confidence: 95.5% Identity: 20% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal proteins L24p and L21e Phyre2 PDB 3iz5 chain Y Region: 109 - 159 Aligned: 51 Modelled: 51 Confidence: 95.3% Identity: 8% PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 1 c1m1gB_ 2 c2ougC_ 3 c2xhcA_ 4 c3p8bB_ 5 c2k06A_ 6 d1nz8a_ 7 d1m1ha2 8 d1nppa2 9 d1nz9a_ 10 c2jvvA_ 11 c2kvqG_ 12 c3ewgA_ 13 c2e6zA_ 14 c2exuA_ 15 d2do3a1 16 c3h7hB_ 17 c2ckkA_ 18 c2e70A_ 19 d1vqot1 20 c3iz5Y_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1m1gB_ 100.0 21 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 2 c2ougC_ 100.0 98 PDB header:transcription Chain: C: PDB Molecule:transcriptional activator rfah; PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution 3 c2xhcA_ 100.0 23 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 4 c3p8bB_ 99.9 21 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 5 c2k06A_ 99.9 17 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg 6 d1nz8a_ 99.9 26 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 7 d1m1ha2 99.9 18 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 8 d1nppa2 99.4 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 9 d1nz9a_ 99.4 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 10 c2jvvA_ 99.4 20 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 11 c2kvqG_ 99.4 20 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 12 c3ewgA_ 97.2 17 PDB header:transcription Chain: A: PDB Molecule:putative transcription antitermination protein nusg; PDBTitle: crystal structure of the n-terminal domain of nusg (ngn) from2 methanocaldococcus jannaschii 13 c2e6zA_ 97.0 21 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 14 c2exuA_ 96.6 11 PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain 15 d2do3a1 96.1 26 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 16 c3h7hB_ 95.9 23 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt5; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 17 c2ckkA_ 95.8 11 PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. 18 c2e70A_ 95.6 20 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 19 d1vqot1 95.5 20 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 20 c3iz5Y_ 95.3 8 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 21 c2zkrt_ not modelled 95.3 10 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 22 c4a1cS_ not modelled 95.1 16 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 23 d2gycs1 not modelled 93.3 16 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 24 d2zjrr1 not modelled 93.2 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 25 c2jz2A_ not modelled 90.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ssl0352 protein; PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42 26 c1s1iU_ not modelled 85.9 14 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 27 c3bboW_ not modelled 83.7 17 PDB header:ribosome Chain: W: PDB Molecule:ribosomal protein l24; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 28 c3iz5N_ not modelled 81.4 13 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 29 d2j01y1 not modelled 79.1 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 30 c3izcN_ not modelled 79.0 23 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 31 d2joya1 not modelled 77.8 9 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L14e 32 c4a19F_ not modelled 69.9 17 PDB header:ribosome Chain: F: PDB Molecule:rpl14; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 33 c2ftcN_ not modelled 67.9 32 PDB header:ribosome Chain: N: PDB Molecule:mitochondrial ribosomal protein l24; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 34 d1ib8a1 not modelled 63.0 10 Fold:Sm-like fold Superfamily:YhbC-like, C-terminal domain Family:YhbC-like, C-terminal domain 35 d1nxza1 not modelled 51.0 9 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 36 d1vqoq1 not modelled 46.4 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 37 c3kbgA_ not modelled 37.8 18 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 38 c4a18N_ not modelled 36.9 17 PDB header:ribosome Chain: N: PDB Molecule:rpl27; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1 39 c3qiiA_ not modelled 36.5 10 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 40 d1rkia1 not modelled 31.3 10 Fold:THUMP domain Superfamily:THUMP domain-like Family:PAE0736-like 41 d2vv5a1 not modelled 29.8 14 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 42 d2pu9b1 not modelled 29.0 18 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain 43 d1vhka1 not modelled 28.0 14 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 44 d2zgwa1 not modelled 27.9 34 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 45 d1h3ga1 not modelled 25.2 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 46 c2dxcG_ not modelled 24.0 19 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 47 c3ikmD_ not modelled 23.0 27 PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme 48 c3iz6D_ not modelled 22.5 16 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 49 c3pifD_ not modelled 21.4 17 PDB header:hydrolase Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1); PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese 50 c2gpzC_ not modelled 21.1 17 PDB header:hydrolase Chain: C: PDB Molecule:transthyretin-like protein; PDBTitle: transthyretin-like protein from salmonella dublin 51 c3j04A_ not modelled 17.9 13 PDB header:structural protein Chain: A: PDB Molecule:myosin-11; PDBTitle: em structure of the heavy meromyosin subfragment of chick smooth2 muscle myosin with regulatory light chain in phosphorylated state 52 d1a8pa1 not modelled 17.7 13 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 53 c3d8tB_ not modelled 17.5 17 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: thermus thermophilus uroporphyrinogen iii synthase 54 c2h1xB_ not modelled 17.3 11 PDB header:hydrolase Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein) 55 c2vc8A_ not modelled 16.6 20 PDB header:protein-binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of the lsm domain of human edc3 (enhancer2 of decapping 3) 56 d1yt8a4 not modelled 16.6 12 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 57 d1ugpb_ not modelled 15.5 24 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 58 d1wd7a_ not modelled 15.4 17 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 59 c2k3aA_ not modelled 15.2 18 PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 60 c2equA_ not modelled 14.9 10 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 61 d1v29b_ not modelled 14.7 10 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 62 c2xzmW_ not modelled 14.2 14 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 63 d2hqha1 not modelled 14.0 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 64 c3izcG_ not modelled 13.9 18 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein rpl6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 65 c2vv5D_ not modelled 13.6 14 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 66 c3p8dB_ not modelled 13.4 7 PDB header:protein binding Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72; PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form) 67 d1jr2a_ not modelled 12.3 24 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 68 c1jr2A_ not modelled 12.3 24 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 69 d1ixda_ not modelled 12.3 20 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 70 c1x60A_ not modelled 12.1 3 PDB header:hydrolase Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc 71 d1f86a_ not modelled 12.1 0 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 72 d2qdyb1 not modelled 12.0 15 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 73 d1s7ia_ not modelled 11.9 29 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946) 74 d1kgia_ not modelled 11.5 0 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 75 d2coya1 not modelled 11.3 11 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 76 c2hqxB_ not modelled 10.7 11 PDB header:transcription Chain: B: PDB Molecule:p100 co-activator tudor domain; PDBTitle: crystal structure of human p100 tudor domain conserved2 region 77 d2hqxa1 not modelled 10.7 11 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 78 c2rm4A_ not modelled 10.6 20 PDB header:protein binding Chain: A: PDB Molecule:cg6311-pb; PDBTitle: solution structure of the lsm domain of dm edc3 (enhancer2 of decapping 3) 79 d1e0ta3 not modelled 10.5 12 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 80 d2diqa1 not modelled 10.3 11 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 81 c2ky9A_ not modelled 10.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ydhk; PDBTitle: solution nmr structure of ydhk c-terminal domain from b.subtilis,2 northeast structural genomics consortium target target sr518 82 c3qz9D_ not modelled 10.1 20 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 83 d2p3ha1 not modelled 10.1 10 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 84 d2hlja1 not modelled 10.0 11 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 85 c1nwxN_ not modelled 9.5 20 PDB header:ribosome Chain: N: PDB Molecule:ribosomal protein l19; PDBTitle: complex of the large ribosomal subunit from deinococcus2 radiodurans with abt-773 86 c3izca_ not modelled 9.4 18 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein rpl1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 87 d1fdra1 not modelled 9.4 33 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 88 d1ttaa_ not modelled 9.3 0 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 89 d2zjrm1 not modelled 9.2 13 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 90 c3izbD_ not modelled 9.1 16 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 91 c1vhkA_ not modelled 9.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 92 c2eqmA_ not modelled 9.0 11 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 93 d1rw1a_ not modelled 8.9 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 94 c1i84V_ not modelled 8.9 14 PDB header:contractile protein Chain: V: PDB Molecule:smooth muscle myosin heavy chain; PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment. 95 d1oo2a_ not modelled 8.8 6 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 96 c3nnhA_ not modelled 8.5 17 PDB header:rna binding protein/rna Chain: A: PDB Molecule:cugbp elav-like family member 1; PDBTitle: crystal structure of the cugbp1 rrm1 with guuguuuuguuu rna 97 c3q1jA_ not modelled 8.4 10 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20 98 c2k3yA_ not modelled 8.4 14 PDB header:transcription regulator Chain: A: PDB Molecule:chromatin modification-related protein eaf3; PDBTitle: solution structure of eaf3 chromo barrel domain bound to2 histone h3 with a dimethyllysine analog h3k36me2 99 c2pmzV_ not modelled 8.3 13 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0