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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1i84V_

Fold library idPDB HeaderMoleculeTitle
c1i84V_PDB header: contractile proteinChain: V: PDB Molecule: smooth muscle myosin heavy chain;PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment.


Added to library: Tue Mar 16 12:34:21 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AQKPLSDDEKFLFVDKNFVNNPLAQADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLS
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Known secondary structure (DSSP)





TTGGGTS



S


TT
TT

TTTSSTTTTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence KDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMY
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Known secondary structure (DSSP) TTS



GGGTT
SBTTSSS


TTT

TT


S

S

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence KGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKQGPSFSY
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Known secondary structure (DSSP) SS

SSSS


T




STTSSTTSS

S


TT



 .........220.........230.........240.........250.........260.........270.........280
Sequence GELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTF
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Known secondary structure (DSSP)
STTTTTT
S

SSS





GGGS


TT



 .........290.........300.........310.........320.........330.........340.........350
Sequence HIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVS
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Known secondary structure (DSSP) T

TT


TTS
SS
TTSS


TT

T

 .........360.........370.........380.........390.........400.........410.........420
Sequence SVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAI
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Known secondary structure (DSSP) TTT


B

TTTS

B


STTS
S




TTS






 .........430.........440.........450.........460.........470.........480.........490
Sequence EALAKAKFERLFRWILTRVNKALDASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQE
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Known secondary structure (DSSP) TTT









SSB
T
 .........500.........510.........520.........530.........540.........550.........560
Sequence EYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSK
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Known secondary structure (DSSP) T
S









TTS

SSS

TTS
TT

TSS
TT
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence QLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLFRTVGQLYK
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Known secondary structure (DSSP) S
TTT

SS

TT



T
S
S

TT






 .........640.........650.........660.........670.........680.........690.........700
Sequence EQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRY
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Known secondary structure (DSSP) TTS




SS

SS


TTS

T
 .........710.........720.........730.........740.........750.........760.........770
Sequence EILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCR
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Known secondary structure (DSSP) TTT
TTTS
SS


TTT

TTT

B
SS
TTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence GYLARKAFAKRQQQLESIFCIQYNVRSFMNVHWPWMLFFIPLLKVTRQEEEMQAKDEELQRTKERQQKAE
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Known secondary structure (DSSP)


TT








ST
 .........850.........860.........870.........880.........890.........900.....
Sequence AELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER
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Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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