Email l.a.kelley@imperial.ac.uk Description P00961 Date Wed Jan 25 15:20:10 GMT 2012 Unique Job ID 46276fdd3490e129

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1f7ua1 99.4 20 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 2 c1f7uA_ 98.4 20 PDB header:ligase/rna Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of the arginyl-trna synthetase complexed with the2 trna(arg) and l-arg 3 c2zufA_ 98.0 17 PDB header:ligase/rna Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii arginyl-trna2 synthetase complexed with trna(arg) 4 c1iq0A_ 97.9 20 PDB header:ligase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: thermus thermophilus arginyl-trna synthetase 5 c3gw7A_ 97.9 19 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein yedj; PDBTitle: crystal structure of a metal-dependent phosphohydrolase2 with conserved hd domain (yedj) from escherichia coli in3 complex with nickel ions. northeast structural genomics4 consortium target er63 6 d1iq0a1 97.6 19 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 7 c2o08B_ 97.5 23 PDB header:hydrolase Chain: B: PDB Molecule:bh1327 protein; PDBTitle: crystal structure of a putative hd superfamily hydrolase (bh1327) from2 bacillus halodurans at 1.90 a resolution 8 d2pq7a1 97.3 20 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 9 d2pjqa1 97.3 16 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 10 d2qgsa1 97.2 14 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 11 c3ccgA_ 97.2 20 PDB header:hydrolase Chain: A: PDB Molecule:hd superfamily hydrolase; PDBTitle: crystal structure of predicted hd superfamily hydrolase involved in2 nad metabolism (np_347894.1) from clostridium acetobutylicum at 1.503 a resolution 12 c3fnrA_ 97.2 14 PDB header:transferase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of putative arginyl t-rna synthetase from2 campylobacter jejuni; 13 c2ogiA_ 96.8 20 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein sag1661; PDBTitle: crystal structure of a putative metal dependent phosphohydrolase2 (sag1661) from streptococcus agalactiae serogroup v at 1.85 a3 resolution 14 d1r89a3 96.7 12 Fold:Ferredoxin-like Superfamily:PAP/Archaeal CCA-adding enzyme, C-terminal domain Family:Archaeal tRNA CCA-adding enzyme 15 d3djba1 96.3 16 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 16 c3hc1A_ 95.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized hdod domain protein; PDBTitle: crystal structure of hdod domain protein with unknown function2 (np_953345.1) from geobacter sulfurreducens at 1.90 a resolution 17 c3m1tA_ 95.8 19 PDB header:hydrolase Chain: A: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of putative phosphohydrolase (yp_929327.1) from2 shewanella amazonensis sb2b at 1.62 a resolution 18 c2x1lC_ 95.6 16 PDB header:ligase Chain: C: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of mycobacterium smegmatis methionyl-trna2 synthetase in complex with methionine and adenosine 19 d3dtoa1 95.6 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 20 c1sz1A_ 94.4 13 PDB header:transferase/rna Chain: A: PDB Molecule:trna nucleotidyltransferase; PDBTitle: mechanism of cca-adding enzymes specificity revealed by crystal2 structures of ternary complexes 21 c3kflA_ not modelled 94.3 13 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: leishmania major methionyl-trna synthetase in complex with2 methionyladenylate and pyrophosphate 22 d3b57a1 not modelled 94.2 13 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 23 c1pfuA_ not modelled 93.6 13 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: methionyl-trna synthetase from escherichia coli complexed2 with methionine phosphinate 24 c2ct8A_ not modelled 92.3 18 PDB header:ligase/rna Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of aquifex aeolicus methionyl-trna2 synthetase complexed with trna(met) and methionyl-adenylate3 anologue 25 c1rqgA_ not modelled 91.2 11 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: methionyl-trna synthetase from pyrococcus abyssi 26 c1woyA_ not modelled 88.8 17 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of methionyl trna synthetase y225f mutant2 from thermus thermophilus 27 c2ztgA_ not modelled 87.8 21 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase lacking the c-terminal dimerization domain in3 complex with ala-sa 28 d1ynba1 not modelled 87.6 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 29 c2cqzA_ not modelled 85.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:177aa long hypothetical protein; PDBTitle: crystal structure of ph0347 protein from pyrococcus horikoshii ot3 30 c3i7aA_ not modelled 82.0 15 PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent phosphohydrolase; PDBTitle: crystal structure of putative metal-dependent phosphohydrolase2 (yp_926882.1) from shewanella amazonensis sb2b at 2.06 a resolution 31 d1pfva1 not modelled 79.0 12 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32 c2zzfA_ not modelled 73.5 17 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of alanyl-trna synthetase without2 oligomerization domain 33 d2paqa1 not modelled 72.1 9 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 34 d1rqga1 not modelled 67.7 11 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 35 d1vqra_ not modelled 67.4 15 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:modified HD domain 36 c3d5lA_ not modelled 63.9 5 PDB header:signaling protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of regulatory protein recx 37 d1xx7a_ not modelled 63.0 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 38 d1riqa1 not modelled 54.4 15 Fold:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Superfamily:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Family:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 39 c3mzoA_ not modelled 51.7 16 PDB header:hydrolase Chain: A: PDB Molecule:lin2634 protein; PDBTitle: crystal structure of a hd-domain phosphohydrolase (lin2634) from2 listeria innocua at 1.98 a resolution 40 c3sp1B_ not modelled 48.2 19 PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: crystal structure of cysteinyl-trna synthetase (cyss) from borrelia2 burgdorferi 41 c1yfsB_ not modelled 45.0 15 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine 42 c2k89A_ not modelled 38.4 10 PDB header:protein binding Chain: A: PDB Molecule:phospholipase a-2-activating protein; PDBTitle: solution structure of a novel ubiquitin-binding domain from2 human plaa (pfuc, gly76-pro77 cis isomer) 43 c1sb7A_ not modelled 38.4 10 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase d; PDBTitle: crystal structure of the e.coli pseudouridine synthase trud 44 c1z2zB_ not modelled 38.0 9 PDB header:lyase Chain: B: PDB Molecule:probable trna pseudouridine synthase d; PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1 45 c2gfnA_ not modelled 37.9 21 PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein; PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1 46 d1pkxa1 not modelled 36.7 27 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Inosicase 47 c3kh1B_ not modelled 36.0 12 PDB header:hydrolase Chain: B: PDB Molecule:predicted metal-dependent phosphohydrolase; PDBTitle: crystal structure of predicted metal-dependent2 phosphohydrolase (zp_00055740.2) from magnetospirillum3 magnetotacticum ms-1 at 1.37 a resolution 48 d2d5ba1 not modelled 35.5 17 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 49 c1hynQ_ not modelled 34.0 15 PDB header:membrane protein Chain: Q: PDB Molecule:band 3 anion transport protein; PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein 50 c3l3fX_ not modelled 33.5 19 PDB header:protein binding Chain: X: PDB Molecule:protein doa1; PDBTitle: crystal structure of a pfu-pul domain pair of saccharomyces cerevisiae2 doa1/ufd3 51 c3ljvA_ not modelled 33.3 21 PDB header:transcription Chain: A: PDB Molecule:mmoq response regulator; PDBTitle: crystal structure of mmoq response regulator (fragment 29-302) from2 methylococcus capsulatus str. bath, northeast structural genomics3 consortium target mcr175m 52 c3dfgA_ not modelled 31.0 11 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx: a potent inhibitor protein of2 reca from xanthomonas campestris 53 d2gfna1 not modelled 30.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 54 c3hxxA_ not modelled 28.8 17 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp 55 c1ileA_ not modelled 27.3 10 PDB header:aminoacyl-trna synthetase Chain: A: PDB Molecule:isoleucyl-trna synthetase; PDBTitle: isoleucyl-trna synthetase 56 c3pstA_ not modelled 26.4 19 PDB header:nuclear protein Chain: A: PDB Molecule:protein doa1; PDBTitle: crystal structure of pul and pfu(mutate) domain 57 c3b81A_ not modelled 25.4 4 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, acrr family; PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution 58 c2zihC_ not modelled 23.9 16 PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 74; PDBTitle: crystal structure of yeast vps74 59 c2o59B_ not modelled 23.9 16 PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase 3; PDBTitle: structure of e. coli topoisomerase iii in complex with an 8-2 base single stranded oligonucleotide. frozen in glycerol3 ph 8.0 60 d1szwa_ not modelled 23.4 13 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:tRNA pseudouridine synthase TruD 61 c2ziiA_ not modelled 23.2 16 PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 74; PDBTitle: crystal structure of yeast vps74-n-term truncation variant 62 d1hynp_ not modelled 22.9 17 Fold:Phoshotransferase/anion transport protein Superfamily:Phoshotransferase/anion transport protein Family:Anion transport protein, cytoplasmic domain 63 d2guma1 not modelled 22.5 10 Fold:Viral glycoprotein ectodomain-like Superfamily:Viral glycoprotein ectodomain-like Family:Glycoprotein B-like 64 c3kpbA_ not modelled 22.2 12 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0100; PDBTitle: crystal structure of the cbs domain pair of protein mj01002 in complex with 5 -methylthioadenosine and s-adenosyl-l-3 methionine. 65 c3orgB_ not modelled 21.0 31 PDB header:transport protein Chain: B: PDB Molecule:cmclc; PDBTitle: crystal structure of a eukaryotic clc transporter 66 c2qv5A_ not modelled 20.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 67 c3nw8B_ not modelled 20.4 10 PDB header:viral protein Chain: B: PDB Molecule:envelope glycoprotein b; PDBTitle: glycoprotein b from herpes simplex virus type 1, y179s mutant, high-ph 68 c3e3vA_ not modelled 19.9 21 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx from lactobacillus salivarius 69 d1i7da_ not modelled 19.4 19 Fold:Prokaryotic type I DNA topoisomerase Superfamily:Prokaryotic type I DNA topoisomerase Family:Prokaryotic type I DNA topoisomerase 70 d2j0sc1 not modelled 19.1 63 Fold:Mago nashi protein Superfamily:Mago nashi protein Family:Mago nashi protein 71 c1nyjC_ not modelled 18.7 26 PDB header:viral protein Chain: C: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 72 c1nyjD_ not modelled 18.7 26 PDB header:viral protein Chain: D: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 73 c2kqtC_ not modelled 18.7 26 PDB header:transport protein Chain: C: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 74 c2kqtA_ not modelled 18.7 26 PDB header:transport protein Chain: A: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 75 c2kqtB_ not modelled 18.7 26 PDB header:transport protein Chain: B: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 76 c1nyjB_ not modelled 18.7 26 PDB header:viral protein Chain: B: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 77 c1mp6A_ not modelled 18.7 26 PDB header:membrane protein Chain: A: PDB Molecule:matrix protein m2; PDBTitle: structure of the transmembrane region of the m2 protein h+2 channel by solid state nmr spectroscopy 78 c2kqtD_ not modelled 18.7 26 PDB header:transport protein Chain: D: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 79 c1nyjA_ not modelled 18.7 26 PDB header:viral protein Chain: A: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 80 c3ooxA_ not modelled 18.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein; PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution 81 c2ph7B_ not modelled 18.0 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein af_2093; PDBTitle: crystal structure of af2093 from archaeoglobus fulgidus 82 c3memA_ not modelled 17.5 21 PDB header:signaling protein Chain: A: PDB Molecule:putative signal transduction protein; PDBTitle: crystal structure of a putative signal transduction protein2 (maqu_0641) from marinobacter aquaeolei vt8 at 2.25 a resolution 83 c2gajA_ not modelled 17.2 13 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form 84 c2kadA_ not modelled 15.3 26 PDB header:membrane protein Chain: A: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 85 c2kadD_ not modelled 15.3 26 PDB header:membrane protein Chain: D: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 86 c2kadC_ not modelled 15.3 26 PDB header:membrane protein Chain: C: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 87 c2kadB_ not modelled 15.3 26 PDB header:membrane protein Chain: B: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 88 d2gycw1 not modelled 14.2 14 Fold:Long alpha-hairpin Superfamily:Ribosomal protein L29 (L29p) Family:Ribosomal protein L29 (L29p) 89 c2jmxA_ not modelled 14.0 15 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase o subunit, mitochondrial; PDBTitle: oscp-nt (1-120) in complex with n-terminal (1-25) alpha2 subunit from f1-atpase 90 d1x9na2 not modelled 13.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 91 c2zkrv_ not modelled 13.7 20 PDB header:ribosomal protein/rna Chain: V: PDB Molecule:rna expansion segment es9 part2; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 92 d1gw5b_ not modelled 13.5 16 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Clathrin adaptor core protein 93 c3kaeC_ not modelled 13.3 28 PDB header:protein binding Chain: C: PDB Molecule:possible protein of nuclear scaffold; PDBTitle: cdc27 n-terminus 94 c3c9jD_ not modelled 12.8 21 PDB header:membrane protein Chain: D: PDB Molecule:proton channel protein m2, transmembrane segment; PDBTitle: the crystal structure of transmembrane domain of m2 protein and2 amantadine complex 95 c3c9jA_ not modelled 12.8 21 PDB header:membrane protein Chain: A: PDB Molecule:proton channel protein m2, transmembrane segment; PDBTitle: the crystal structure of transmembrane domain of m2 protein and2 amantadine complex 96 c3c9jB_ not modelled 12.8 21 PDB header:membrane protein Chain: B: PDB Molecule:proton channel protein m2, transmembrane segment; PDBTitle: the crystal structure of transmembrane domain of m2 protein and2 amantadine complex 97 c3c9jC_ not modelled 12.8 21 PDB header:membrane protein Chain: C: PDB Molecule:proton channel protein m2, transmembrane segment; PDBTitle: the crystal structure of transmembrane domain of m2 protein and2 amantadine complex 98 c2g9tT_ not modelled 12.6 54 PDB header:viral protein Chain: T: PDB Molecule: PDBTitle: crystal structure of the sars coronavirus nsp10 at 2.1a 99 d1wgla_ not modelled 12.4 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain