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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1z2zB_

Fold library idPDB HeaderMoleculeTitle
c1z2zB_PDB header: lyaseChain: B: PDB Molecule: probable trna pseudouridine synthase d;PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1


Added to library: Tue Mar 16 13:13:09 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XEVPEIEKQIGINLYSTDTTGLGGQLRQEIEDFIVKEITNREEGEEGKYLIVELTKRDWDTHHLTRTLSR
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TT



S

S




BS
SSGGGS


BS
SSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence ILQVSQKRISVAGTKDKRALTTQKISIFDTDASEIEKIHLKDIELKVLGRSRKSVELGDLWGNDFRITVR
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TTTS



SSSS

TT


TTSS


TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NIENSPEETEALLKKTTDEILAQGGVPNFFGIQRFGSVRPVTHLVGKAIVEGNFEKAALLYIAEPFPEEP
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Known secondary structure (DSSP) SS
TS



GGGG
SS


T
S


TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence EETKNARQFVKDTLDFKEGLKTYPLRLGHERAXXNHLIANPEDYSGSFRVLPQNLYRXFVHGYQSYIYNI
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Known secondary structure (DSSP)

S
GGGSTT
STTS
SGGGT
 .........290.........300.........310.........320.........330.........340.........350
Sequence ILCRRIEAGIPLNRAVEGDIVCFRNEVGLPDSSKTEKVTSETVNAXNRLLKLGRAFITAPLPGYNTEFAS
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Known secondary structure (DSSP) S


TT


SS


TTS



TTTTTS


SS




 .........360.........370.........380.........390.........400.........410.........420
Sequence GIPGEIENGVLKELGVSLEGFNIEKFPEXSSKGTRREVLLEVKPKFEAGEDELNPGKSKAVLEFXLPKGS
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Known secondary structure (DSSP) TT

GGGGS
SS
GGG



S



B



SSSTTSTT
 .........430.......
Sequence YATTVLREYXKVNPLQX
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Known secondary structure (DSSP)
T
S
GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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