PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3kaeC_

Fold library id	PDB Header	Molecule	Title
c3kaeC_	PDB header: protein binding	Chain: C: PDB Molecule: possible protein of nuclear scaffold;	PDBTitle: cdc27 n-terminus

Links to external resources
Added to library: Sat Aug 28 22:34:07 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K L I G K I C K S I R Y R D Y E T A I F L A A C L L P C K P E Y R M L M S I V L Y L N G E Y T R A L F H L H K L N T C T S K Y Y E S L C Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T T T
T
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K K K D Y K K A I K S L E S I L E G K V E R D P D V D A R I Q E M F V D P G D E E F F E S L L G D L C T L S G Y R E E G I G H Y V R S F G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S B
T T S
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S F L F S P V E N L L L E N K V P Q K R D R R G I E E E Y V S D S I E F H E S L S P S L V K K Y M E H V P G I G S Y F I S N A A R R Y F N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T T T T T

. . . . . . . . . 220 . . . . . . . . . 230 .

Sequence G M N D K S K A C F E L V R R K D P M F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	L	I	G	K	I	C	K	S	I	R	Y	R	D	Y	E	T	A	I	F	L	A	A	C	L	L	P	C	K	P	E	Y	R	M	L	M	S	I	V	L	Y	L	N	G	E	Y	T	R	A	L	F	H	L	H	K	L	N	T	C	T	S	K	Y	Y	E	S	L	C	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T																	S	T	T											T	T											T			B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	K	K	D	Y	K	K	A	I	K	S	L	E	S	I	L	E	G	K	V	E	R	D	P	D	V	D	A	R	I	Q	E	M	F	V	D	P	G	D	E	E	F	F	E	S	L	L	G	D	L	C	T	L	S	G	Y	R	E	E	G	I	G	H	Y	V	R	S	F	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T														T	T		S	B											T	T	S			T	T																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	F	L	F	S	P	V	E	N	L	L	L	E	N	K	V	P	Q	K	R	D	R	R	G	I	E	E	E	Y	V	S	D	S	I	E	F	H	E	S	L	S	P	S	L	V	K	K	Y	M	E	H	V	P	G	I	G	S	Y	F	I	S	N	A	A	R	R	Y	F	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T										S																										T	T	T	T	T																T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence	G	M	N	D	K	S	K	A	C	F	E	L	V	R	R	K	D	P	M	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																S	T	T	T