Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	L	L	I	L	G	N	H	T	C	G	N	R	G	D	S	A	I	L	R	G	L	L	D	A	I	N	I	L	N	P	H	A	E	V	D	V	M	S	R	Y	P	V	S	S	S	W	L	L	N	R	P	V	M	G	D	P	L	F
Secondary structure
SS confidence
Disorder		?																																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	Q	M	K	Q	H	N	S	A	A	G	V	V	G	R	V	K	K	V	L	R	R	R	Y	Q	H	Q	V	L	L	S	R	V	T	D	T	G	K	L	R	N	I	A	I	A	Q	G	F	T	D	F	V	R	L	L	S	G	Y	D	A
Secondary structure
SS confidence
Disorder			?		?	?	?	?	?		?	?			?				?	?	?			?	?	?	?		?		?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	I	Q	V	G	G	S	F	F	V	D	L	Y	G	V	P	Q	F	E	H	A	L	C	T	F	M	A	K	K	P	L	F	M	I	G	H	S	V	G	P	F	Q	D	E	Q	F	N	Q	L	A	N	Y	V	F	G	H	C	D	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	L	R	E	S	V	S	F	D	L	M	K	R	S	N	I	T	T	A	K	V	E	H	G	V	D	T	A	W	L	V	D	H	H	T	E	D	F	T	A	S	Y	A	V	Q	H	W	L	D	V	A	A	Q	Q	K	T	V	A	I	T
Secondary structure
SS confidence
Disorder																																			?	?	?	?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	R	E	L	A	P	F	D	K	R	L	G	T	T	Q	Q	A	Y	E	K	A	F	A	G	V	V	N	R	I	L	D	E	G	Y	Q	V	I	A	L	S	T	C	T	G	I	D	S	Y	N	K	D	D	R	M	V	A	L	N	L	R
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?	?	?																													?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Q	H	I	S	D	P	A	R	Y	H	V	V	M	D	E	L	N	D	L	E	M	G	K	I	L	G	A	C	E	L	T	V	G	T	R	L	H	S	A	I	I	S	M	N	F	A	T	P	A	I	A	I	N	Y	E	H	K	S	A	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	M	Q	Q	L	G	L	P	E	M	A	I	D	I	R	H	L	L	D	G	S	L	Q	A	M	V	A	D	T	L	G	Q	L	P	A	L	N	A	R	L	S	E	A	V	S	R	E	R	Q	T	G	M	Q	M	V	Q	S	V	L	E
Secondary structure
SS confidence
Disorder																		?
Disorder confidence
		.	.	.	.	.	.
Sequence		R	I	G	E	V	K
Secondary structure
SS confidence
Disorder			?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1psw chain A Region: 1 - 394 Aligned: 318 Modelled: 343 Confidence: 99.5% Identity: 16% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: ADP-heptose LPS heptosyltransferase II Phyre2 PDB 3tov chain B Region: 2 - 392 Aligned: 295 Modelled: 315 Confidence: 99.4% Identity: 10% PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 Phyre2 PDB 1o6c chain A Region: 1 - 426 Aligned: 342 Modelled: 377 Confidence: 99.4% Identity: 13% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 3ot5 chain D Region: 1 - 421 Aligned: 353 Modelled: 382 Confidence: 99.2% Identity: 11% PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes Phyre2 PDB 2h1f chain B Region: 1 - 352 Aligned: 260 Modelled: 296 Confidence: 99.2% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp Phyre2 PDB 1v4v chain A Region: 2 - 402 Aligned: 334 Modelled: 352 Confidence: 99.1% Identity: 10% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 2x6r chain A Region: 1 - 422 Aligned: 359 Modelled: 370 Confidence: 99.1% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose Phyre2 PDB 3c4v chain B Region: 1 - 422 Aligned: 367 Modelled: 387 Confidence: 99.1% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. Phyre2 PDB 2xmp chain B Region: 1 - 422 Aligned: 358 Modelled: 372 Confidence: 99.0% Identity: 13% PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp Phyre2 PDB 1f6d chain A Region: 1 - 421 Aligned: 362 Modelled: 379 Confidence: 98.9% Identity: 10% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 3oy2 chain A Region: 1 - 422 Aligned: 359 Modelled: 379 Confidence: 98.9% Identity: 11% PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a Phyre2 PDB 2xcu chain C Region: 20 - 420 Aligned: 306 Modelled: 337 Confidence: 98.8% Identity: 11% PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Phyre2 PDB 2jjm chain H Region: 1 - 422 Aligned: 344 Modelled: 360 Confidence: 98.6% Identity: 12% PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. Phyre2 PDB 2bis chain A domain 1 Region: 1 - 422 Aligned: 396 Modelled: 417 Confidence: 98.6% Identity: 13% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Glycosyl transferases group 1 Phyre2 PDB 2gej chain A Region: 1 - 422 Aligned: 338 Modelled: 354 Confidence: 98.5% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man Phyre2 PDB 3dzc chain A Region: 1 - 421 Aligned: 362 Modelled: 387 Confidence: 98.3% Identity: 11% PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. Phyre2 PDB 3oka chain A Region: 2 - 422 Aligned: 354 Modelled: 369 Confidence: 98.2% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) Phyre2 PDB 3l7m chain C Region: 2 - 424 Aligned: 353 Modelled: 359 Confidence: 98.1% Identity: 10% PDB header:structural protein Chain: C: PDB Molecule:teichoic acid biosynthesis protein f; PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a Phyre2 PDB 2r60 chain A Region: 1 - 422 Aligned: 384 Modelled: 398 Confidence: 98.1% Identity: 10% PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii Phyre2 PDB 1pn3 chain A Region: 1 - 426 Aligned: 363 Modelled: 391 Confidence: 98.0% Identity: 16% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Gtf glycosyltransferase Phyre2 PDB 1rrv chain A Region: 321 - 422 Aligned: 99 Modelled: 99 Confidence: 96.8% Identity: 16% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Gtf glycosyltransferase Phyre2 1 d1pswa_ 2 c3tovB_ 3 d1o6ca_ 4 c3ot5D_ 5 c2h1fB_ 6 d1v4va_ 7 c2x6rA_ 8 c3c4vB_ 9 c2xmpB_ 10 d1f6da_ 11 c3oy2A_ 12 c2xcuC_ 13 c2jjmH_ 14 d2bisa1 15 c2gejA_ 16 c3dzcA_ 17 c3okaA_ 18 c3l7mC_ 19 c2r60A_ 20 d1pn3a_ 21 22 23 d1rrva_ 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pswa_ 99.5 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II 2 c3tovB_ 99.4 10 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 3 d1o6ca_ 99.4 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 4 c3ot5D_ 99.2 11 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes 5 c2h1fB_ 99.2 14 PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp 6 d1v4va_ 99.1 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 7 c2x6rA_ 99.1 13 PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose 8 c3c4vB_ 99.1 14 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 9 c2xmpB_ 99.0 13 PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp 10 d1f6da_ 98.9 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 11 c3oy2A_ 98.9 11 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 12 c2xcuC_ 98.8 11 PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp 13 c2jjmH_ 98.6 12 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 14 d2bisa1 98.6 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 15 c2gejA_ 98.5 13 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 16 c3dzcA_ 98.3 11 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 17 c3okaA_ 98.2 11 PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) 18 c3l7mC_ 98.1 10 PDB header:structural protein Chain: C: PDB Molecule:teichoic acid biosynthesis protein f; PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a 19 c2r60A_ 98.1 10 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 20 d1pn3a_ 98.0 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 21 c3rhzB_ not modelled 97.9 10 PDB header:transferase Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein; PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions 22 d1iira_ not modelled 97.2 18 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 23 d1rrva_ 96.8 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 24 d1uqta_ not modelled 96.7 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Trehalose-6-phosphate synthase, OtsA 25 d1rzua_ not modelled 96.6 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 26 c2iyaB_ not modelled 96.3 10 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 27 c2p6pB_ not modelled 95.9 11 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 28 c1uquB_ not modelled 95.9 11 PDB header:synthase Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase; PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose. 29 c3d0qB_ not modelled 95.7 14 PDB header:transferase Chain: B: PDB Molecule:protein calg3; PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222 30 c3othB_ not modelled 95.5 12 PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form 31 d1t0ia_ not modelled 95.4 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 32 c3pe3D_ not modelled 95.3 14 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 33 d2c1xa1 not modelled 95.0 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 34 c2fzvC_ not modelled 94.9 10 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 35 c2o6lA_ not modelled 94.8 8 PDB header:transferase Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7; PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7 36 c2qzsA_ not modelled 94.6 12 PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) 37 c2vsnB_ not modelled 94.2 14 PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation 38 c3hbjA_ not modelled 94.0 8 PDB header:transferase Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase; PDBTitle: structure of ugt78g1 complexed with udp 39 d2vcha1 not modelled 93.8 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 40 d2fzva1 not modelled 93.6 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 41 d2pq6a1 not modelled 93.3 6 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 42 c3iaaB_ not modelled 93.2 14 PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form 43 d1rtta_ not modelled 93.1 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 44 d1ka9h_ not modelled 93.1 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 45 c2x0dA_ not modelled 93.0 9 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 46 c2q62A_ not modelled 92.7 12 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 47 d2acva1 not modelled 92.2 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 48 d1fyea_ not modelled 91.8 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 49 c3q3hA_ not modelled 91.2 14 PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc 50 d2a9va1 not modelled 90.5 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 51 d2f9fa1 not modelled 90.3 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 52 d1k9vf_ not modelled 90.2 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 53 d2iw1a1 not modelled 89.5 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 54 d1ydga_ not modelled 89.4 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 55 d1hyea1 not modelled 89.4 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 56 c3ic5A_ not modelled 89.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative saccharopine dehydrogenase; PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi. 57 c2vrcD_ not modelled 88.5 14 PDB header:oxidoreductase Chain: D: PDB Molecule:triphenylmethane reductase; PDBTitle: crystal structure of the citrobacter sp. triphenylmethane2 reductase complexed with nadp(h) 58 c3pu6A_ not modelled 85.9 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of an uncharacterized protein from wolinella2 succinogenes 59 c3lcmB_ not modelled 85.9 20 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 60 c3hbmA_ not modelled 85.7 11 PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni 61 c3p0rA_ not modelled 85.1 8 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 62 c3eywA_ not modelled 84.5 15 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 63 c3m2pD_ not modelled 83.9 11 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase; PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus 64 c3k1yE_ not modelled 83.6 11 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 65 d1cfza_ not modelled 83.4 21 Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Hydrogenase maturating endopeptidase HybD 66 c2e85B_ not modelled 83.2 14 PDB header:hydrolase Chain: B: PDB Molecule:hydrogenase 3 maturation protease; PDBTitle: crystal structure of the hydrogenase 3 maturation protease 67 c2issF_ not modelled 82.8 29 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 68 c2pk3B_ not modelled 82.4 26 PDB header:oxidoreductase Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase; PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase 69 c3icpA_ not modelled 82.1 26 PDB header:isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of udp-galactose 4-epimerase 70 d1f0ka_ not modelled 81.8 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 71 d1up7a1 not modelled 81.7 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 72 c2pzlB_ not modelled 80.9 21 PDB header:sugar binding protein Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp 73 c2zkiH_ not modelled 80.4 12 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 74 d2cmda1 not modelled 80.1 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 75 c3s29C_ not modelled 79.8 11 PDB header:transferase Chain: C: PDB Molecule:sucrose synthase 1; PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications. 76 c2zklA_ not modelled 79.4 20 PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus 77 d1t5ba_ not modelled 79.3 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 78 d1s6ya1 not modelled 79.2 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 79 c2p5uC_ not modelled 78.5 20 PDB header:isomerase Chain: C: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad 80 c1a5zA_ not modelled 78.3 24 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: lactate dehydrogenase from thermotoga maritima (tmldh) 81 d1udca_ not modelled 78.2 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 82 d2z98a1 not modelled 78.2 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 83 d2blla1 not modelled 77.5 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 84 c2hunB_ not modelled 77.2 27 PDB header:lyase Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase; PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3 85 c2x4gA_ not modelled 77.0 18 PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa 86 d1obba1 not modelled 77.0 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 87 c2ggsB_ not modelled 75.2 20 PDB header:oxidoreductase Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii 88 d1qyia_ not modelled 72.6 14 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein MW1667 (SA1546) 89 c3l4eA_ not modelled 72.5 19 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 90 d1txga2 not modelled 71.4 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 91 d1vl0a_ not modelled 71.3 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 92 c3l4bG_ not modelled 70.9 15 PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima 93 d1b8pa1 not modelled 70.7 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 94 d7mdha1 not modelled 70.3 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 95 d1a5za1 not modelled 70.3 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 96 c7mdhA_ not modelled 70.1 8 PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form 97 d2c5aa1 not modelled 70.1 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 98 c3fniA_ not modelled 69.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 99 c3c7cB_ not modelled 68.9 18 PDB header:oxidoreductase Chain: B: PDB Molecule:octopine dehydrogenase; PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine) 100 c5mdhB_ not modelled 68.2 13 PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of ternary complex of porcine cytoplasmic malate2 dehydrogenase alpha-ketomalonate and tnad at 2.4 angstroms resolution 101 c2v9cA_ not modelled 67.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 102 c2z2vA_ not modelled 66.7 27 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1688; PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii 103 c2jzcA_ not modelled 66.3 14 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1 104 c3l7nA_ not modelled 66.1 28 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 105 c1gv1D_ not modelled 66.0 14 PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for thermophilic protein stability:2 structures of thermophilic and mesophilic malate3 dehydrogenases 106 c2vzhA_ not modelled 64.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-dependent fmn reductase; PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex 107 c2pr7A_ not modelled 64.4 9 PDB header:hydrolase Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family; PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution 108 c2q1wC_ not modelled 63.6 20 PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ 109 c2ywjA_ not modelled 63.2 23 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii 110 d1y7ta1 not modelled 62.7 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 111 c3fvwA_ not modelled 62.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 112 c1obbB_ not modelled 62.0 16 PDB header:hydrolase Chain: B: PDB Molecule:alpha-glucosidase; PDBTitle: alpha-glucosidase a, agla, from thermotoga maritima in2 complex with maltose and nad+ 113 c1b8vA_ not modelled 60.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: malate dehydrogenase from aquaspirillum arcticum 114 c3edoA_ not modelled 60.4 11 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 115 d1n2sa_ not modelled 60.1 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 116 c3qhpB_ not modelled 59.9 13 PDB header:transferase Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori 117 d1o1ya_ not modelled 59.7 28 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 118 d1e5da1 not modelled 59.4 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 119 c3cwcB_ not modelled 59.0 20 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 120 d1kewa_ not modelled 58.8 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0