Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP30866
DateThu Jan 5 11:46:42 GMT 2012
Unique Job ID451ba3ed64418a6f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1vl5a_
Top template information
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
Confidence and coverage
Confidence:100.0% Coverage: 98%
203 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSGLPQGRPTFGAAQNVSAVVAYDLSAHMLDVVAQAAEARQLKNITTRQGYAESLPFADN
Secondary structure 























SS confidence 



























































Disorder  ????


































?



















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   .........70.........80.........90.........100.........110.........120
Sequence  AFDIVISRYSAHHWHDVGAALREVNRILKPGGRLIVMDVMSPGHPVRDIWLQTVEALRDT
Secondary structure 















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   .........130.........140.........150.........160.........170.........180
Sequence  SHVRNYASGEWLTLINEANLIVDNLITDKLPLEFSSWVARMRTPEALVDAIRIYQQSAST
Secondary structure 


















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   .........190.........200.......
Sequence  EVRTYFALQNDGFFTSDIIMVDAHKAA
Secondary structure 













SS confidence 


























Disorder 























???
Disorder confidence 


























 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1vl5 chain A

3D model

Region: 3 - 205
Aligned: 203
Modelled: 203
Confidence: 100.0%
Identity: 30%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: UbiE/COQ5-like

Phyre2

PDB 1vl5 chain B

3D model

Region: 3 - 205
Aligned: 203
Modelled: 203
Confidence: 100.0%
Identity: 30%
PDB header:transferase
Chain: B: PDB Molecule:unknown conserved protein bh2331;
PDBTitle: crystal structure of a putative methyltransferase (bh2331) from2 bacillus halodurans c-125 at 1.95 a resolution

Phyre2

PDB 1xxl chain A

3D model

Region: 3 - 206
Aligned: 204
Modelled: 204
Confidence: 100.0%
Identity: 33%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: UbiE/COQ5-like

Phyre2

PDB 2o57 chain A domain 1

3D model

Region: 3 - 205
Aligned: 198
Modelled: 203
Confidence: 99.9%
Identity: 16%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Mycolic acid cyclopropane synthase

Phyre2

PDB 3mgg chain B

3D model

Region: 3 - 206
Aligned: 204
Modelled: 204
Confidence: 99.9%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of methyl transferase from methanosarcina2 mazei

Phyre2

PDB 3ccf chain B

3D model

Region: 3 - 206
Aligned: 198
Modelled: 204
Confidence: 99.9%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:cyclopropane-fatty-acyl-phospholipid synthase;
PDBTitle: crystal structure of putative methyltransferase (yp_321342.1) from2 anabaena variabilis atcc 29413 at 1.90 a resolution

Phyre2

PDB 2yr0 chain A

3D model

Region: 3 - 203
Aligned: 199
Modelled: 201
Confidence: 99.9%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha0223;
PDBTitle: crystal structure of hypothetical methyltransferase ttha0223 from2 thermus thermophilus hb8

Phyre2

PDB 3e7p chain A

3D model

Region: 3 - 205
Aligned: 198
Modelled: 203
Confidence: 99.8%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482

Phyre2

PDB 3ujc chain A

3D model

Region: 3 - 205
Aligned: 198
Modelled: 203
Confidence: 99.8%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:phosphoethanolamine n-methyltransferase;
PDBTitle: phosphoethanolamine methyltransferase mutant (h132a) from plasmodium2 falciparum in complex with phosphocholine

Phyre2

PDB 2fk8 chain A

3D model

Region: 3 - 205
Aligned: 199
Modelled: 203
Confidence: 99.8%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine

Phyre2

PDB 3f4k chain A

3D model

Region: 3 - 206
Aligned: 195
Modelled: 204
Confidence: 99.8%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a probable methyltransferase from2 bacteroides thetaiotaomicron. northeast structural3 genomics target btr309.

Phyre2

PDB 3g5t chain A

3D model

Region: 3 - 205
Aligned: 202
Modelled: 203
Confidence: 99.8%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast

Phyre2

PDB 1kpi chain A

3D model

Region: 3 - 205
Aligned: 200
Modelled: 203
Confidence: 99.8%
Identity: 12%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Mycolic acid cyclopropane synthase

Phyre2

PDB 3cc8 chain A

3D model

Region: 3 - 206
Aligned: 182
Modelled: 187
Confidence: 99.8%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a putative methyltransferase (bce_1332) from2 bacillus cereus atcc 10987 at 1.64 a resolution

Phyre2

PDB 3bus chain B

3D model

Region: 3 - 205
Aligned: 200
Modelled: 203
Confidence: 99.8%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of rebm

Phyre2

PDB 1jqe chain A

3D model

Region: 3 - 147
Aligned: 144
Modelled: 145
Confidence: 99.8%
Identity: 9%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Histamine methyltransferase

Phyre2

PDB 2p7i chain B

3D model

Region: 3 - 206
Aligned: 189
Modelled: 204
Confidence: 99.8%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a sam dependent methyl-transferase type 12 family2 protein (eca1738) from pectobacterium atrosepticum scri1043 at 1.74 a3 resolution

Phyre2

PDB 2gh1 chain A domain 1

3D model

Region: 3 - 204
Aligned: 199
Modelled: 202
Confidence: 99.8%
Identity: 14%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: BC2162-like

Phyre2

PDB 1kpg chain A

3D model

Region: 3 - 205
Aligned: 198
Modelled: 203
Confidence: 99.8%
Identity: 15%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Mycolic acid cyclopropane synthase

Phyre2

PDB 2fk8 chain A domain 1

3D model

Region: 3 - 205
Aligned: 200
Modelled: 203
Confidence: 99.8%
Identity: 11%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Mycolic acid cyclopropane synthase

Phyre2
1

d1vl5a_
2

c1vl5B_
3

d1xxla_
4

d2o57a1
5

c3mggB_
6

c3ccfB_
7

c2yr0A_
8

c3e7pA_
9

c3ujcA_
10

c2fk8A_
11

c3f4kA_
12

c3g5tA_
13

d1kpia_
14

c3cc8A_
15

c3busB_
16

d1jqea_
17

c2p7iB_
18

d2gh1a1
19

d1kpga_
20

d2fk8a1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1vl5a_



100.0 30 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
2c1vl5B_



100.0 30 PDB header:transferase
Chain: B: PDB Molecule:unknown conserved protein bh2331;
PDBTitle: crystal structure of a putative methyltransferase (bh2331) from2 bacillus halodurans c-125 at 1.95 a resolution
3d1xxla_



100.0 33 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
4d2o57a1



99.9 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
5c3mggB_



99.9 18 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of methyl transferase from methanosarcina2 mazei
6c3ccfB_



99.9 17 PDB header:transferase
Chain: B: PDB Molecule:cyclopropane-fatty-acyl-phospholipid synthase;
PDBTitle: crystal structure of putative methyltransferase (yp_321342.1) from2 anabaena variabilis atcc 29413 at 1.90 a resolution
7c2yr0A_



99.9 17 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha0223;
PDBTitle: crystal structure of hypothetical methyltransferase ttha0223 from2 thermus thermophilus hb8
8c3e7pA_



99.8 16 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482
9c3ujcA_



99.8 13 PDB header:transferase
Chain: A: PDB Molecule:phosphoethanolamine n-methyltransferase;
PDBTitle: phosphoethanolamine methyltransferase mutant (h132a) from plasmodium2 falciparum in complex with phosphocholine
10c2fk8A_



99.8 11 PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine
11c3f4kA_



99.8 12 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a probable methyltransferase from2 bacteroides thetaiotaomicron. northeast structural3 genomics target btr309.
12c3g5tA_



99.8 20 PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast
13d1kpia_



99.8 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
14c3cc8A_



99.8 16 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a putative methyltransferase (bce_1332) from2 bacillus cereus atcc 10987 at 1.64 a resolution
15c3busB_



99.8 20 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of rebm
16d1jqea_



99.8 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Histamine methyltransferase
17c2p7iB_



99.8 16 PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a sam dependent methyl-transferase type 12 family2 protein (eca1738) from pectobacterium atrosepticum scri1043 at 1.74 a3 resolution
18d2gh1a1



99.8 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:BC2162-like
19d1kpga_



99.8 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
20d2fk8a1



99.8 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
21d2p7ia1



not modelled 99.8 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
22c2p35A_



not modelled 99.8 16 PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 2-methyltransferase;
PDBTitle: crystal structure of trans-aconitate methyltransferase from2 agrobacterium tumefaciens
23d1nkva_



not modelled 99.8 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical Protein YjhP
24d2ex4a1



not modelled 99.8 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
25d1tpya_



not modelled 99.8 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
26c3dliB_



not modelled 99.8 10 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of a sam dependent methyltransferase from2 archaeoglobus fulgidus
27d1l1ea_



not modelled 99.8 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
28c3bkxB_



not modelled 99.8 15 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of cyclopropane-fatty-acyl-phospholipid synthase-2 like protein (yp_807781.1) from lactobacillus casei atcc 334 at 1.853 a resolution
29c3lccA_



not modelled 99.8 14 PDB header:transferase
Chain: A: PDB Molecule:putative methyl chloride transferase;
PDBTitle: structure of a sam-dependent halide methyltransferase from arabidopsis2 thaliana
30c3h2bB_



not modelled 99.8 16 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of the sam-dependent methyltransferase2 cg3271 from corynebacterium glutamicum in complex with s-3 adenosyl-l-homocysteine and pyrophosphate. northeast4 structural genomics consortium target cgr113a
31c3ocjA_



not modelled 99.8 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis
32c3l8dA_



not modelled 99.8 19 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of methyltransferase from bacillus2 thuringiensis
33c3dlcA_



not modelled 99.8 23 PDB header:transferase
Chain: A: PDB Molecule:putative s-adenosyl-l-methionine-dependent
PDBTitle: crystal structure of a putative s-adenosyl-l-methionine-dependent2 methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 a3 resolution
34d1r74a_



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
35d1xtpa_



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
36c3g2qA_



not modelled 99.7 21 PDB header:transferase
Chain: A: PDB Molecule:pcza361.24;
PDBTitle: crystal structure of the glycopeptide n-methyltransferase mtfa2 complexed with sinefungin
37d1yzha1



not modelled 99.7 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
38d1im8a_



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical protein HI0319 (YecO)
39d1xvaa_



not modelled 99.7 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
40d2a14a1



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arylamine N-methyltransferase
41c3mq2A_



not modelled 99.7 19 PDB header:transferase
Chain: A: PDB Molecule:16s rrna methyltransferase;
PDBTitle: crystal structure of 16s rrna methyltranferase kamb
42c3bgvC_



not modelled 99.7 18 PDB header:transferase
Chain: C: PDB Molecule:mrna cap guanine-n7 methyltransferase;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase2 in complex with sah
43d2avna1



not modelled 99.7 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
44d2fcaa1



not modelled 99.7 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
45c2gs9A_



not modelled 99.7 21 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein tt1324;
PDBTitle: crystal structure of tt1324 from thermus thermophilis hb8
46d1ri5a_



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:mRNA cap (Guanine N-7) methyltransferase
47c3sm3A_



not modelled 99.7 19 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferases;
PDBTitle: crystal structure of sam-dependent methyltransferases q8puk2_metma2 from methanosarcina mazei. northeast structural genomics consortium3 target mar262.
48c3e23A_



not modelled 99.7 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rpa2492;
PDBTitle: crystal structure of the rpa2492 protein in complex with2 sam from rhodopseudomonas palustris, northeast structural3 genomics consortium target rpr299
49c1z3cA_



not modelled 99.7 15 PDB header:transferase
Chain: A: PDB Molecule:mrna capping enzyme;
PDBTitle: encephalitozooan cuniculi mrna cap (guanine-n7)2 methyltransferasein complexed with azoadomet
50c3m70A_



not modelled 99.7 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein tehb homolog;
PDBTitle: crystal structure of tehb from haemophilus influenzae
51c3e8sA_



not modelled 99.7 17 PDB header:transferase
Chain: A: PDB Molecule:putative sam dependent methyltransferase;
PDBTitle: crystal structure of putative sam dependent methyltransferase in2 complex with sah (np_744700.1) from pseudomonas putida kt2440 at 2.103 a resolution
52d1ve3a1



not modelled 99.7 29 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CAC2371-like
53c3ou7A_



not modelled 99.7 16 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: dhpi-sam-hep complex
54c3ku1E_



not modelled 99.7 14 PDB header:transferase
Chain: E: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of streptococcus pneumoniae sp1610, a2 putative trna (m1a22) methyltransferase, in complex with s-3 adenosyl-l-methionine
55c3lecA_



not modelled 99.7 11 PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:nadb-rossmann superfamily protein;
PDBTitle: the crystal structure of a protein in the nadb-rossmann2 superfamily from streptococcus agalactiae to 1.8a
56d1d2ha_



not modelled 99.7 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
57c2iipD_



not modelled 99.7 18 PDB header:transferase
Chain: D: PDB Molecule:nicotinamide n-methyltransferase;
PDBTitle: human nicotinamide n-methyltransferase
58c3hnrA_



not modelled 99.7 17 PDB header:transferase
Chain: A: PDB Molecule:probable methyltransferase bt9727_4108;
PDBTitle: crystal structure of a probable methyltransferase2 bt9727_4108 from bacillus thuringiensis subsp. northeast3 structural genomics consortium target id bur219
59c3mtiA_



not modelled 99.7 16 PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a
60c3g07C_



not modelled 99.7 15 PDB header:transferase
Chain: C: PDB Molecule:7sk snrna methylphosphate capping enzyme;
PDBTitle: methyltransferase domain of human bicoid-interacting protein2 3 homolog (drosophila)
61c3g5lA_



not modelled 99.6 18 PDB header:transferase
Chain: A: PDB Molecule:putative s-adenosylmethionine dependent
PDBTitle: crystal structure of putative s-adenosylmethionine2 dependent methyltransferase from listeria monocytogenes
62d1pjza_



not modelled 99.6 5 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
63d1xcla_



not modelled 99.6 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
64c3ofkA_



not modelled 99.6 16 PDB header:transferase
Chain: A: PDB Molecule:nodulation protein s;
PDBTitle: crystal structure of n-methyltransferase nods from bradyrhizobium2 japonicum wm9 in complex with s-adenosyl-l-homocysteine (sah)
65c3dtnA_



not modelled 99.6 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative methyltransferase mm_2633;
PDBTitle: crystal structure of putative methyltransferase-mm_26332 from methanosarcina mazei .
66d2bzga1



not modelled 99.6 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
67c3gnlB_



not modelled 99.6 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein, duf633, lmof2365_1472;
PDBTitle: structure of uncharacterized protein (lmof2365_1472) from2 listeria monocytogenes serotype 4b
68c3merA_



not modelled 99.6 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:slr1183 protein;
PDBTitle: crystal structure of the methyltransferase slr1183 from2 synechocystis sp. pcc 6803, northeast structural genomics3 consortium target sgr145
69c3bgdB_



not modelled 99.6 15 PDB header:transferase
Chain: B: PDB Molecule:thiopurine s-methyltransferase;
PDBTitle: thiopurine s-methyltransferase
70c3ndjA_



not modelled 99.6 12 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
71d1y8ca_



not modelled 99.6 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CAC2371-like
72c3ggdA_



not modelled 99.6 13 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase (yp_325210.1)2 from anabaena variabilis atcc 29413 at 2.11 a resolution
73d1zx0a1



not modelled 99.6 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
74c3dxyA_



not modelled 99.6 15 PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of ectrmb in complex with sam
75c2p8jA_



not modelled 99.6 22 PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine-dependent methyltransferase;
PDBTitle: crystal structure of s-adenosylmethionine-dependent methyltransferase2 (np_349143.1) from clostridium acetobutylicum at 2.00 a resolution
76c3pfhD_



not modelled 99.6 17 PDB header:transferase
Chain: D: PDB Molecule:n-methyltransferase;
PDBTitle: x-ray crystal structure the n,n-dimethyltransferase tylm1 from2 streptomyces fradiae in complex with sah and dtdp-quip3n
77c3egeA_



not modelled 99.6 22 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase from antibiotic biosynthesis
PDBTitle: crystal structure of putative methyltransferase from antibiotic2 biosynthesis pathway (yp_324569.1) from anabaena variabilis atcc3 29413 at 2.40 a resolution
78c3opnA_



not modelled 99.6 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hemolysin;
PDBTitle: the crystal structure of a putative hemolysin from lactococcus lactis
79c3cggB_



not modelled 99.6 20 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of tehb-like sam-dependent methyltransferase2 (np_600671.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.00 a resolution
80c3bxoA_



not modelled 99.6 20 PDB header:transferase
Chain: A: PDB Molecule:n,n-dimethyltransferase;
PDBTitle: crystal structure of streptomyces venezuelae desvi
81c2pxxA_



not modelled 99.6 24 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein mgc2408;
PDBTitle: human putative methyltransferase mgc2408
82c3m33B_



not modelled 99.6 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein from2 deinococcus radiodurans r1
83d1dusa_



not modelled 99.6 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical protein MJ0882
84c3jwgA_



not modelled 99.6 15 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase type 12;
PDBTitle: crystal structure analysis of the methyltransferase domain2 of bacterial-cthen1-c
85d1p91a_



not modelled 99.6 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA methyltransferase RlmA
86c3dh0B_



not modelled 99.6 20 PDB header:transferase
Chain: B: PDB Molecule:sam dependent methyltransferase;
PDBTitle: crystal structure of a sam dependent methyltransferase from2 aquifex aeolicus
87d1wzna1



not modelled 99.6 26 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CAC2371-like
88c3grzA_



not modelled 99.6 18 PDB header:transferase
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus
89d1vlma_



not modelled 99.6 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
90c3bkwB_



not modelled 99.5 20 PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine dependent methyltransferase;
PDBTitle: crystal structure of s-adenosylmethionine dependent methyltransferase2 (np_104914.1) from mesorhizobium loti at 1.60 a resolution
91c3d2lC_



not modelled 99.5 21 PDB header:transferase
Chain: C: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase (zp_00538691.1)2 from exiguobacterium sp. 255-15 at 1.90 a resolution
92c3eeyJ_



not modelled 99.5 14 PDB header:transferase
Chain: J: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of putative rrna-methylase from clostridium2 thermocellum
93c3p2kA_



not modelled 99.5 19 PDB header:transferase
Chain: A: PDB Molecule:16s rrna methylase;
PDBTitle: structure of an antibiotic related methyltransferase
94d1p1ca_



not modelled 99.5 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
95d1yb2a1



not modelled 99.5 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
96c1yb2A_



not modelled 99.5 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.
97d2g72a1



not modelled 99.5 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arylamine N-methyltransferase
98d1af7a2



not modelled 99.5 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Chemotaxis receptor methyltransferase CheR, C-terminal domain
99c3ckkA_



not modelled 99.5 15 PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of human methyltransferase-like protein 1
100d2nxca1



not modelled 99.5 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ribosomal protein L11 methyltransferase PrmA
101d1l3ia_



not modelled 99.5 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Precorrin-6Y methyltransferase (CbiT)
102c2g8nB_



not modelled 99.5 17 PDB header:transferase
Chain: B: PDB Molecule:phenylethanolamine n-methyltransferase;
PDBTitle: structure of hpnmt with inhibitor 3-hydroxymethyl-7-(n-4-2 chlorophenylaminosulfonyl)-thiq and adohcy
103c3e05B_



not modelled 99.5 16 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating);
PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15
104c2vduE_



not modelled 99.5 18 PDB header:transferase
Chain: E: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex
105d1m6ya2



not modelled 99.5 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
106c2yvlB_



not modelled 99.5 12 PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus
107d2i6ga1



not modelled 99.5 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TehB-like
108d1vbfa_



not modelled 99.5 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
109c3lbfC_



not modelled 99.5 20 PDB header:transferase
Chain: C: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of protein l-isoaspartyl methyltransferase from2 escherichia coli
110d2b3ta1



not modelled 99.5 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
111c3dmgA_



not modelled 99.5 17 PDB header:transferase
Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase;
PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy
112c3lpmA_



not modelled 99.5 16 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase small domain protein2 from listeria monocytogenes
113c2ip2B_



not modelled 99.5 11 PDB header:transferase
Chain: B: PDB Molecule:probable phenazine-specific methyltransferase;
PDBTitle: structure of the pyocyanin biosynthetic protein phzm
114d2igta1



not modelled 99.5 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
115c3gwzB_



not modelled 99.5 13 PDB header:transferase
Chain: B: PDB Molecule:mmcr;
PDBTitle: structure of the mitomycin 7-o-methyltransferase mmcr
116d1g8sa_



not modelled 99.5 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Fibrillarin homologue
117c3evzA_



not modelled 99.5 15 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus
118d1jg1a_



not modelled 99.5 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
119c3i9fB_



not modelled 99.4 20 PDB header:transferase
Chain: B: PDB Molecule:putative type 11 methyltransferase;
PDBTitle: crystal structure of a putative type 11 methyltransferase2 from sulfolobus solfataricus
120d1dl5a1



not modelled 99.4 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0