Email l.a.kelley@imperial.ac.uk Description P64423 Date Thu Jan 5 12:08:12 GMT 2012 Unique Job ID 41475b339d581a2e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2bbjB_ 100.0 15 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 2 c3nwiC_ 100.0 90 PDB header:transport protein Chain: C: PDB Molecule:zinc transport protein zntb; PDBTitle: the soluble domain structure of the zntb zn2+ efflux system 3 d2iuba1 100.0 15 Fold:CorA soluble domain-like Superfamily:CorA soluble domain-like Family:CorA soluble domain-like 4 c3ck6E_ 100.0 18 PDB header:structural protein Chain: E: PDB Molecule:putative membrane transport protein; PDBTitle: crystal structure of zntb cytoplasmic domain from vibrio2 parahaemolyticus rimd 2210633 5 c2hn1A_ 100.0 16 PDB header:metal transport Chain: A: PDB Molecule:magnesium and cobalt transporter; PDBTitle: crystal structure of a cora soluble domain from a. fulgidus in complex2 with co2+ 6 d2bbha1 100.0 17 Fold:CorA soluble domain-like Superfamily:CorA soluble domain-like Family:CorA soluble domain-like 7 d2iuba2 99.4 18 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 8 d3cx5d2 64.2 13 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 9 d1ppjd2 63.2 19 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 10 c3fseB_ 33.0 9 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 11 c1qcrD_ 29.7 19 PDB header: PDB COMPND: 12 c3cwbQ_ 27.8 19 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 13 c1p84D_ 27.3 13 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 14 c2yiuE_ 27.2 6 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution 15 c3dl8H_ 26.6 13 PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 16 c1eboE_ 25.1 16 PDB header:viral protein Chain: E: PDB Molecule:ebola virus envelope protein chimera consisting PDBTitle: crystal structure of the ebola virus membrane-fusion2 subunit, gp2, from the envelope glycoprotein ectodomain 17 c3j01A_ 24.7 18 PDB header:ribosome/ribosomal protein Chain: A: PDB Molecule:preprotein translocase secy subunit; PDBTitle: structure of the ribosome-secye complex in the membrane environment 18 c2fynH_ 23.7 6 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 19 c3ghgK_ 21.7 10 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 20 c3tu8A_ 21.7 27 PDB header:unknown function Chain: A: PDB Molecule:burkholderia lethal factor 1 (blf1); PDBTitle: crystal structure of the burkholderia lethal factor 1 (blf1) 21 c1zrtD_ not modelled 20.7 9 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 22 c3mkuA_ not modelled 18.7 13 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 23 c1s1iJ_ not modelled 18.6 43 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 24 c2akiY_ not modelled 17.9 18 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: normal mode-based flexible fitted coordinates of a2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli 25 c4a1cD_ not modelled 16.0 44 PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l11; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 26 d1iwga8 not modelled 15.2 11 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 27 c3rfuC_ not modelled 15.2 10 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 28 d1e52a_ not modelled 14.8 27 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 29 d2d69a2 not modelled 14.7 20 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 30 c1dkgB_ not modelled 14.4 18 PDB header:complex (hsp24/hsp70) Chain: B: PDB Molecule:nucleotide exchange factor grpe; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak 31 c1oy8A_ not modelled 13.6 24 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 32 d1svda2 not modelled 12.8 33 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 33 c1ei3E_ not modelled 12.8 11 PDB header: PDB COMPND: 34 c2ks1B_ not modelled 12.7 29 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 35 c2cpbA_ not modelled 12.4 9 PDB header:viral protein Chain: A: PDB Molecule:m13 major coat protein; PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures 36 c2akfC_ not modelled 11.6 12 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 37 c2akfB_ not modelled 11.6 12 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 38 c2akfA_ not modelled 11.6 12 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 39 d1bxna2 not modelled 11.5 13 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 40 d1tqga_ not modelled 11.5 14 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Chemotaxis protein CheA P1 domain 41 d1i6za_ not modelled 10.7 6 Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain 42 d1wh5a_ not modelled 9.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 43 d2p61a1 not modelled 9.6 12 Fold:Four-helical up-and-down bundle Superfamily:TM1646-like Family:TM1646-like 44 c2xzm7_ not modelled 9.4 20 PDB header:ribosome Chain: 7: PDB Molecule:plectin/s10 domain containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 45 c3qthA_ not modelled 9.3 14 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical dinb-like protein (cps_3021) from2 colwellia psychrerythraea 34h at 2.20 a resolution 46 c2p61A_ not modelled 9.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tm_1646; PDBTitle: crystal structure of protein tm1646 from thermotoga2 maritima, pfam duf327 47 c3dinF_ not modelled 8.8 18 PDB header:membrane protein, protein transport Chain: F: PDB Molecule:preprotein translocase subunit secy; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 48 c2zqpY_ not modelled 8.8 16 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus 49 c1w5kB_ not modelled 8.6 24 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 50 c1w5kC_ not modelled 8.6 24 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 51 c1w5kA_ not modelled 8.6 24 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 52 c1w5kD_ not modelled 8.6 24 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 53 c3kyiA_ not modelled 8.6 14 PDB header:transferase Chain: A: PDB Molecule:putative histidine protein kinase; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides 54 d1rzhh2 not modelled 8.5 36 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 55 d2c2aa1 not modelled 8.5 5 Fold:ROP-like Superfamily:Homodimeric domain of signal transducing histidine kinase Family:Homodimeric domain of signal transducing histidine kinase 56 c2qupA_ not modelled 8.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh1478 protein; PDBTitle: crystal structure of uncharacterized protein bh1478 from bacillus2 halodurans 57 c3u5gK_ not modelled 8.1 16 PDB header:ribosome Chain: K: PDB Molecule:40s ribosomal protein s10-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 58 d1l9bh2 not modelled 7.9 36 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 59 c2oszA_ not modelled 7.9 13 PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding 60 d1oe4a_ not modelled 7.9 43 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 61 d1qoja_ not modelled 7.7 28 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 62 c1htjF_ not modelled 7.6 12 PDB header:signaling protein Chain: F: PDB Molecule:kiaa0380; PDBTitle: structure of the rgs-like domain from pdz-rhogef 63 d1htjf_ not modelled 7.6 12 Fold:Regulator of G-protein signaling, RGS Superfamily:Regulator of G-protein signaling, RGS Family:Regulator of G-protein signaling, RGS 64 d1wpga4 not modelled 7.6 8 Fold:Calcium ATPase, transmembrane domain M Superfamily:Calcium ATPase, transmembrane domain M Family:Calcium ATPase, transmembrane domain M 65 c2oltB_ not modelled 7.6 13 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a phou-like protein (so_3770) from shewanella2 oneidensis mr-1 at 2.00 a resolution 66 d1wi3a_ not modelled 7.6 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 67 c2y69Y_ not modelled 7.6 13 PDB header:electron transport Chain: Y: PDB Molecule:cytochrome c oxidase subunit 7c; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 68 c3c0uA_ not modelled 7.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yaeq; PDBTitle: crystal structure of e.coli yaeq protein 69 d1u5pa1 not modelled 7.4 14 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 70 d1mh3a1 not modelled 7.4 4 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 71 c3ixzA_ not modelled 7.3 9 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 72 c2dceA_ not modelled 7.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kiaa1915 protein; PDBTitle: solution structure of the swirm domain of human kiaa19152 protein 73 d1i5na_ not modelled 7.3 14 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Chemotaxis protein CheA P1 domain 74 c2lchA_ not modelled 7.2 15 PDB header:de novo protein Chain: A: PDB Molecule:protein or38; PDBTitle: solution nmr structure of a protein with a redesigned hydrophobic2 core, northeast structural genomics consortium target or38 75 c1s94A_ not modelled 7.2 11 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei 76 d1s94a_ not modelled 7.2 11 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 77 d1h9aa2 not modelled 7.2 13 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Glucose 6-phosphate dehydrogenase-like 78 c1kmiZ_ not modelled 7.2 9 PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez 79 c3qnqD_ not modelled 7.1 20 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 80 c2wwbA_ not modelled 7.1 11 PDB header:ribosome Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 81 c3r1fO_ not modelled 7.1 11 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 82 d1uhsa_ not modelled 7.0 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 83 d9anta_ not modelled 7.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 84 d1e3oc1 not modelled 6.9 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 85 d1s35a2 not modelled 6.9 8 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 86 d1d6za4 not modelled 6.8 25 Fold:N domain of copper amine oxidase-like Superfamily:Copper amine oxidase, domain N Family:Copper amine oxidase, domain N 87 d8ruca2 not modelled 6.8 13 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 88 c2vi6F_ not modelled 6.7 17 PDB header:transcription Chain: F: PDB Molecule:homeobox protein nanog; PDBTitle: crystal structure of the nanog homeodomain 89 d2rcrh2 not modelled 6.7 36 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 90 c1nfoA_ not modelled 6.7 4 PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) 91 c3movB_ not modelled 6.7 24 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment 92 c3b8eC_ not modelled 6.6 13 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 93 d1eysh2 not modelled 6.6 25 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 94 c1gk4A_ not modelled 6.5 19 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 95 d1riqa1 not modelled 6.5 12 Fold:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Superfamily:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Family:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 96 d1le8a_ not modelled 6.4 4 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 97 c3a7pB_ not modelled 6.4 15 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 98 c2l2tA_ not modelled 6.4 21 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 99 d1du0a_ not modelled 6.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain