Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP32684
DateThu Jan 5 11:50:08 GMT 2012
Unique Job ID3ea15965f4458ded

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3dh3C_
Top template information
PDB header:isomerase/rna
Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f;
PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate
Confidence and coverage
Confidence:100.0% Coverage: 82%
239 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE
Secondary structure 



























SS confidence 



























































Disorder  ???????
































??

?














Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG
Secondary structure 

































SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT
Secondary structure 

















SS confidence 



























































Disorder 







?


















































Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS
Secondary structure 




















SS confidence 



























































Disorder 






























??






















????
Disorder confidence 



























































 
   .........250.........260.........270.........280.........290
Sequence  SEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR
Secondary structure 

















































SS confidence 

















































Disorder  ??????????????????????????????????????????????????
Disorder confidence 

















































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3dh3 chain C

3D model

Region: 4 - 242
Aligned: 239
Modelled: 239
Confidence: 100.0%
Identity: 100%
PDB header:isomerase/rna
Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f;
PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate

Phyre2

PDB 1ksk chain A

3D model

Region: 5 - 232
Aligned: 226
Modelled: 225
Confidence: 100.0%
Identity: 28%
PDB header:lyase
Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a;
PDBTitle: structure of rsua

Phyre2

PDB 1vio chain A

3D model

Region: 6 - 232
Aligned: 223
Modelled: 227
Confidence: 100.0%
Identity: 31%
PDB header:lyase
Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a;
PDBTitle: crystal structure of pseudouridylate synthase

Phyre2

PDB 2gml chain A

3D model

Region: 66 - 240
Aligned: 175
Modelled: 175
Confidence: 100.0%
Identity: 98%
PDB header:isomerase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f;
PDBTitle: crystal structure of catalytic domain of e.coli rluf

Phyre2

PDB 1ksk chain A domain 4

3D model

Region: 67 - 233
Aligned: 167
Modelled: 167
Confidence: 100.0%
Identity: 29%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase RsuA/RluD

Phyre2

PDB 1vio chain A domain 1

3D model

Region: 65 - 232
Aligned: 166
Modelled: 168
Confidence: 100.0%
Identity: 31%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase RsuA/RluD

Phyre2

PDB 2oml chain A

3D model

Region: 64 - 226
Aligned: 162
Modelled: 163
Confidence: 100.0%
Identity: 35%
PDB header:isomerase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e;
PDBTitle: crystal structure of e. coli pseudouridine synthase rlue

Phyre2

PDB 2olw chain B

3D model

Region: 66 - 226
Aligned: 160
Modelled: 161
Confidence: 100.0%
Identity: 33%
PDB header:isomerase
Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e;
PDBTitle: crystal structure of e. coli pseudouridine synthase rlue

Phyre2

PDB 1v9k chain A

3D model

Region: 60 - 201
Aligned: 142
Modelled: 142
Confidence: 100.0%
Identity: 19%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase RsuA/RluD

Phyre2

PDB 2i82 chain D

3D model

Region: 61 - 201
Aligned: 141
Modelled: 140
Confidence: 99.9%
Identity: 15%
PDB header:lyase/rna
Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a;
PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure

Phyre2

PDB 1v9f chain A

3D model

Region: 62 - 201
Aligned: 140
Modelled: 140
Confidence: 99.9%
Identity: 20%
PDB header:lyase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d;
PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli

Phyre2

PDB 1v9f chain A

3D model

Region: 62 - 201
Aligned: 140
Modelled: 140
Confidence: 99.9%
Identity: 20%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase RsuA/RluD

Phyre2

PDB 1qyu chain A

3D model

Region: 62 - 201
Aligned: 140
Modelled: 140
Confidence: 99.9%
Identity: 20%
PDB header:lyase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d;
PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud

Phyre2

PDB 1vio chain A domain 2

3D model

Region: 6 - 60
Aligned: 55
Modelled: 55
Confidence: 99.4%
Identity: 29%
Fold: Alpha-L RNA-binding motif
Superfamily: Alpha-L RNA-binding motif
Family: Pseudouridine synthase RsuA N-terminal domain

Phyre2

PDB 1p9k chain A

3D model

Region: 1 - 62
Aligned: 62
Modelled: 62
Confidence: 99.3%
Identity: 21%
Fold: Alpha-L RNA-binding motif
Superfamily: Alpha-L RNA-binding motif
Family: YbcJ-like

Phyre2

PDB 1dm9 chain A

3D model

Region: 3 - 54
Aligned: 52
Modelled: 52
Confidence: 99.2%
Identity: 29%
Fold: Alpha-L RNA-binding motif
Superfamily: Alpha-L RNA-binding motif
Family: Heat shock protein 15 kD

Phyre2

PDB 1dm9 chain A

3D model

Region: 3 - 54
Aligned: 52
Modelled: 52
Confidence: 99.2%
Identity: 29%
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka
PDBTitle: heat shock protein 15 kd

Phyre2

PDB 3bbn chain D

3D model

Region: 7 - 84
Aligned: 78
Modelled: 78
Confidence: 99.0%
Identity: 22%
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein s4;
PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.

Phyre2

PDB 2k6p chain A

3D model

Region: 7 - 76
Aligned: 70
Modelled: 68
Confidence: 99.0%
Identity: 27%
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein hp_1423;
PDBTitle: solution structure of hypothetical protein, hp1423

Phyre2

PDB 1c06 chain A

3D model

Region: 7 - 86
Aligned: 80
Modelled: 80
Confidence: 99.0%
Identity: 24%
Fold: Alpha-L RNA-binding motif
Superfamily: Alpha-L RNA-binding motif
Family: Ribosomal protein S4

Phyre2
1

c3dh3C_
2

c1kskA_
3

c1vioA_
4

c2gmlA_
5

d1kska4
6

d1vioa1
7

c2omlA_
8

c2olwB_
9

d1v9ka_
10

c2i82D_
11

c1v9fA_
12

d1v9fa_
13

c1qyuA_
14

d1vioa2
15

d1p9ka_
16

d1dm9a_
17

c1dm9A_
18

c3bbnD_
19

c2k6pA_
20

d1c06a_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3dh3C_



100.0 100 PDB header:isomerase/rna
Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f;
PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate
2c1kskA_



100.0 28 PDB header:lyase
Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a;
PDBTitle: structure of rsua
3c1vioA_



100.0 31 PDB header:lyase
Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a;
PDBTitle: crystal structure of pseudouridylate synthase
4c2gmlA_



100.0 98 PDB header:isomerase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f;
PDBTitle: crystal structure of catalytic domain of e.coli rluf
5d1kska4



100.0 29 Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase RsuA/RluD
6d1vioa1



100.0 31 Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase RsuA/RluD
7c2omlA_



100.0 35 PDB header:isomerase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e;
PDBTitle: crystal structure of e. coli pseudouridine synthase rlue
8c2olwB_



100.0 33 PDB header:isomerase
Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e;
PDBTitle: crystal structure of e. coli pseudouridine synthase rlue
9d1v9ka_



100.0 19 Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase RsuA/RluD
10c2i82D_



99.9 15 PDB header:lyase/rna
Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a;
PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure
11c1v9fA_



99.9 20 PDB header:lyase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d;
PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli
12d1v9fa_



99.9 20 Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase RsuA/RluD
13c1qyuA_



99.9 20 PDB header:lyase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d;
PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud
14d1vioa2



99.4 29 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
15d1p9ka_



99.3 21 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:YbcJ-like
16d1dm9a_



99.2 29 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Heat shock protein 15 kD
17c1dm9A_



99.2 29 PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka
PDBTitle: heat shock protein 15 kd
18c3bbnD_



99.0 22 PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein s4;
PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
19c2k6pA_



99.0 27 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein hp_1423;
PDBTitle: solution structure of hypothetical protein, hp1423
20d1c06a_



99.0 24 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Ribosomal protein S4
21c2cqjA_



not modelled 99.0 22 PDB header:rna binding protein
Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein
PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog
22d2uubd1



not modelled 98.9 31 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Ribosomal protein S4
23d2gy9d1



not modelled 98.7 27 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Ribosomal protein S4
24d2apoa2



not modelled 98.6 22 Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
25d2ey4a2



not modelled 98.6 21 Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
26c2ey4A_



not modelled 98.5 23 PDB header:isomerase/biosynthetic protein
Chain: A: PDB Molecule:probable trna pseudouridine synthase b;
PDBTitle: crystal structure of a cbf5-nop10-gar1 complex
27d1r3ea2



not modelled 98.5 27 Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
28d1k8wa5



not modelled 98.5 20 Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
29c2apoA_



not modelled 98.4 21 PDB header:isomerase/rna binding protein
Chain: A: PDB Molecule:probable trna pseudouridine synthase b;
PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex
30d1sgva2



not modelled 98.3 22 Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
31c1sgvA_



not modelled 98.2 22 PDB header:lyase
Chain: A: PDB Molecule:trna pseudouridine synthase b;
PDBTitle: structure of trna psi55 pseudouridine synthase (trub)
32c3uaiA_



not modelled 98.2 19 PDB header:isomerase/chaperone
Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4;
PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae
33c1k8wA_



not modelled 98.1 18 PDB header:lyase/rna
Chain: A: PDB Molecule:trna pseudouridine synthase b;
PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna
34c3hp7A_



not modelled 98.1 28 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hemolysin, putative;
PDBTitle: putative hemolysin from streptococcus thermophilus.
35d1kska3



not modelled 97.9 26 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
36c1s1hD_



not modelled 97.6 16 PDB header:ribosome
Chain: D: PDB Molecule:40s ribosomal protein s9-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
37c2xzmD_



not modelled 97.6 12 PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein s4 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
38d1jh3a_



not modelled 97.5 22 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
39d1h3fa2



not modelled 97.5 23 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
40c2janD_



not modelled 97.1 22 PDB header:ligase
Chain: D: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state
41c1h3eA_



not modelled 97.0 23 PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol
42c1ze2B_



not modelled 93.9 23 PDB header:lyase/rna
Chain: B: PDB Molecule:trna pseudouridine synthase b;
PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate
43c3iz6C_



not modelled 93.6 17 PDB header:ribosome
Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
44c3kbgA_



not modelled 93.5 26 PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s4e;
PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28.
45c2xzmW_



not modelled 92.8 23 PDB header:ribosome
Chain: W: PDB Molecule:40s ribosomal protein s4;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
46c3iz6D_



not modelled 91.2 23 PDB header:ribosome
Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
47c3izbD_



not modelled 91.0 24 PDB header:ribosome
Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
48d2g1la1



not modelled 70.3 24 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
49d1fm0d_



not modelled 64.5 19 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:MoaD
50c3fm8A_



not modelled 63.3 24 PDB header:transport protein/hydrolase activator
Chain: A: PDB Molecule:kinesin-like protein kif13b;
PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target)
51c3hvzB_



not modelled 59.6 29 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a
52c2eh0A_



not modelled 58.3 24 PDB header:transport protein
Chain: A: PDB Molecule:kinesin-like protein kif1b;
PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b
53c3h7hA_



not modelled 58.3 22 PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt4;
PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273)
54c3po0A_



not modelled 58.1 35 PDB header:protein binding
Chain: A: PDB Molecule:small archaeal modifier protein 1;
PDBTitle: crystal structure of samp1 from haloferax volcanii
55c2qieB_



not modelled 55.9 26 PDB header:transferase
Chain: B: PDB Molecule:molybdopterin synthase small subunit;
PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z
56d1rwsa_



not modelled 55.8 29 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
57c2kmmA_



not modelled 54.9 29 PDB header:hydrolase
Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'-
PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481)
58d1tkea1



not modelled 48.7 14 Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:TGS domain
59d2hzab1



not modelled 47.9 22 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
60d1wlna1



not modelled 47.3 12 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
61d1vjka_



not modelled 46.5 39 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:MoaD
62d2hzaa1



not modelled 44.9 23 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
63c1z4hA_



not modelled 43.9 27 PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
64d2affa1



not modelled 42.2 24 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
65c3gmgB_



not modelled 41.3 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873;
PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis
66c2exuA_



not modelled 39.0 17 PDB header:transcription
Chain: A: PDB Molecule:transcription initiation protein spt4/spt5;
PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain
67d2ff4a3



not modelled 35.4 11 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
68c3dwmA_



not modelled 34.4 18 PDB header:transferase
Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a;
PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen
69d1nyra2



not modelled 33.8 9 Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:TGS domain
70c1q5vB_



not modelled 33.4 24 PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
71c2bj3D_



not modelled 32.6 28 PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
72c1r21A_



not modelled 31.6 17 PDB header:cell cycle
Chain: A: PDB Molecule:antigen ki-67;
PDBTitle: solution structure of human ki67 fha domain
73c3rpfC_



not modelled 30.8 21 PDB header:transferase
Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad);
PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695
74d1wxqa2



not modelled 30.1 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:G domain-linked domain
75d1xo3a_



not modelled 27.5 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:C9orf74 homolog
76c2qjlA_



not modelled 27.1 20 PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin-related modifier 1;
PDBTitle: crystal structure of urm1
77c3gqsB_



not modelled 26.7 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:adenylate cyclase-like protein;
PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis
78d1zud21



not modelled 25.1 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
79d2cu3a1



not modelled 24.8 36 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
80c2g1eA_



not modelled 24.6 22 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ta0895;
PDBTitle: solution structure of ta0895
81d1v8ca1



not modelled 24.4 27 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:MoaD
82c1wwtA_



not modelled 24.3 5 PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic;
PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase
83d1c1za5



not modelled 24.0 21 Fold:Complement control module/SCR domain
Superfamily:Complement control module/SCR domain
Family:Complement control module/SCR domain
84c3poaA_



not modelled 23.9 20 PDB header:peptide binding protein
Chain: A: PDB Molecule:putative uncharacterized protein tb39.8;
PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions
85d2piea1



not modelled 23.4 21 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
86d2bj7a1



not modelled 23.1 38 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
87c2jqlA_



not modelled 22.2 28 PDB header:cell cycle
Chain: A: PDB Molecule:dna damage response protein kinase dun1;
PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1
88c3kt9A_



not modelled 22.1 14 PDB header:hydrolase
Chain: A: PDB Molecule:aprataxin;
PDBTitle: aprataxin fha domain
89c2kl0A_



not modelled 21.4 27 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
90c2ca9B_



not modelled 21.3 28 PDB header:transcriptional regulation
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
91c1yj5C_



not modelled 21.0 16 PDB header:transferase
Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain;
PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
92c3cwiA_



not modelled 20.7 41 PDB header:biosynthetic protein
Chain: A: PDB Molecule:thiamine-biosynthesis protein this;
PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137
93c2r9qD_



not modelled 20.5 9 PDB header:hydrolase
Chain: D: PDB Molecule:2'-deoxycytidine 5'-triphosphate deaminase;
PDBTitle: crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from2 agrobacterium tumefaciens
94c1tygG_



not modelled 20.2 9 PDB header:biosynthetic protein
Chain: G: PDB Molecule:yjbs;
PDBTitle: structure of the thiazole synthase/this complex
95c1f5nA_



not modelled 19.5 13 PDB header:signaling protein
Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1;
PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
96d1ryja_



not modelled 18.5 27 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
97d1xnea_



not modelled 18.2 19 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ProFAR isomerase associated domain
98c2l52A_



not modelled 18.1 22 PDB header:protein binding
Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog;
PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans
99d1wgka_



not modelled 18.0 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:C9orf74 homolog

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0