PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2i82D_

Fold library id	PDB Header	Molecule	Title
c2i82D_	PDB header: lyase/rna	Chain: D: PDB Molecule: ribosomal large subunit pseudouridine synthase a;	PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure

Links to external resources
Added to library: Tue Mar 16 14:01:04 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E N Y N P P Q E P W L V I L Y Q D D H I X V V N K P S G L L S V P G R L E E H K D S V X T R I Q R D Y P Q A E S V H R L D X A T S G V I V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
T T S B S S
S S G G G
B T T T S T T
S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A L T K A A E R E L K R Q F R E R E P K K Q Y V A R V W G H P S P A E G L V D L P L I C D W P N R P K Q K V C Y E T G K P A Q T E Y E V V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T
S S
S S S
G G G T T
T T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y A A D N T A R V V L K P I T G R S H Q L R V H X L A L G H P I L G D R F Y A S P E A R A X A P R L L L H A E X L T I T H P A Y G N S X T F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S
T T T
B T T
T T T S
T T
S S
T T T

. . . . . .

Sequence K A P A D F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	N	Y	N	P	P	Q	E	P	W	L	V	I	L	Y	Q	D	D	H	I	X	V	V	N	K	P	S	G	L	L	S	V	P	G	R	L	E	E	H	K	D	S	V	X	T	R	I	Q	R	D	Y	P	Q	A	E	S	V	H	R	L	D	X	A	T	S	G	V	I	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	S									S	S								T	T	S	B	S	S			S	S	G	G	G			B						T	T	T	S	T	T				S	S				S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	L	T	K	A	A	E	R	E	L	K	R	Q	F	R	E	R	E	P	K	K	Q	Y	V	A	R	V	W	G	H	P	S	P	A	E	G	L	V	D	L	P	L	I	C	D	W	P	N	R	P	K	Q	K	V	C	Y	E	T	G	K	P	A	Q	T	E	Y	E	V	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S													T	T		S										S			S	S	S												G	G	G	T	T						T	T	T		B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	A	A	D	N	T	A	R	V	V	L	K	P	I	T	G	R	S	H	Q	L	R	V	H	X	L	A	L	G	H	P	I	L	G	D	R	F	Y	A	S	P	E	A	R	A	X	A	P	R	L	L	L	H	A	E	X	L	T	I	T	H	P	A	Y	G	N	S	X	T	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T									S	S			T	T										T			B	T	T		T	T	T	S						T	T		S	S													T	T	T
	.	.	.	.	.	.
Sequence	K	A	P	A	D	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)