Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	L	Q	R	F	D	D	S	T	L	I	R	I	F	A	L	H	E	L	H	R	L	K	E	H	G	L	T	R	G	A	L	L	D	Y	H	S	R	Y	K	L	V	F	L	A	H	S	Q	P	E	Y	R	K	L	G	P	F	V	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?																				?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	I	H	Q	W	Q	N	L	D	D	Y	Y	N	Q	Y	R	Q	R	V	V	V	L	L	S	H	P	A	N	P	R	D	H	T	N	V	L	M	H	V	Q	G	Y	F	R	P	H	I	D	S	T	E	R	Q	Q	L	A	A	L	I	D
Secondary structure
SS confidence
Disorder			?	?	?		?	?																	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Sequence		S	Y	R	R	G	E	Q	P	L	L	A	P	L	M	R	I	K	H	Y	M	A	L	Y	P	D	A	W	L	S	G	Q	R	Y	F	E	L	W	P	R	V	I	N	L	R	H	S	G	V	L
Secondary structure
SS confidence
Disorder																																												?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ld7 chain B Region: 103 - 145 Aligned: 43 Modelled: 43 Confidence: 61.6% Identity: 5% PDB header:transcription Chain: B: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of the msin3a pah3-sap30 sid complex Phyre2 PDB 2khq chain A Region: 67 - 141 Aligned: 75 Modelled: 75 Confidence: 34.0% Identity: 13% PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b Phyre2 PDB 1gxy chain A Region: 16 - 90 Aligned: 71 Modelled: 75 Confidence: 31.7% Identity: 10% Fold: ADP-ribosylation Superfamily: ADP-ribosylation Family: Ecto-ART Phyre2 PDB 1puj chain A Region: 68 - 132 Aligned: 65 Modelled: 65 Confidence: 31.2% Identity: 14% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: G proteins Phyre2 PDB 3lys chain C Region: 68 - 141 Aligned: 74 Modelled: 74 Confidence: 30.8% Identity: 7% PDB header:recombination Chain: C: PDB Molecule:prophage pi2 protein 01, integrase; PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f Phyre2 PDB 3nkz chain D Region: 39 - 110 Aligned: 71 Modelled: 72 Confidence: 20.6% Identity: 15% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:flagellar protein flit; PDBTitle: the crystal structure of a flagella protein from yersinia2 enterocolitica subsp. enterocolitica 8081 Phyre2 PDB 2oxo chain A Region: 68 - 144 Aligned: 77 Modelled: 77 Confidence: 17.8% Identity: 8% PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase Phyre2 PDB 3zv0 chain A Region: 113 - 157 Aligned: 45 Modelled: 45 Confidence: 16.8% Identity: 9% PDB header:cell cycle Chain: A: PDB Molecule:protein shq1; PDBTitle: structure of the shq1p-cbf5p complex Phyre2 PDB 2dl1 chain A Region: 86 - 133 Aligned: 48 Modelled: 48 Confidence: 16.7% Identity: 17% PDB header:protein transport Chain: A: PDB Molecule:spartin; PDBTitle: solution structure of the mit domain from human spartin Phyre2 PDB 2rmr chain A Region: 85 - 145 Aligned: 59 Modelled: 61 Confidence: 16.5% Identity: 12% PDB header:transcription Chain: A: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of msin3a pah1 domain Phyre2 PDB 2x2i chain B Region: 114 - 168 Aligned: 46 Modelled: 55 Confidence: 14.1% Identity: 15% PDB header:lyase Chain: B: PDB Molecule:alpha-1,4-glucan lyase isozyme 1; PDBTitle: crystal structure of the gracilariopsis lemaneiformis alpha-2 1,4-glucan lyase with acarbose Phyre2 PDB 4a1e chain F Region: 53 - 125 Aligned: 57 Modelled: 73 Confidence: 13.6% Identity: 25% PDB header:ribosome Chain: F: PDB Molecule:rpl7a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 Phyre2 PDB 2v4x chain A Region: 18 - 51 Aligned: 34 Modelled: 34 Confidence: 13.6% Identity: 12% PDB header:viral protein Chain: A: PDB Molecule:capsid protein p27; PDBTitle: crystal structure of jaagsiekte sheep retrovirus capsid n-2 terminal domain Phyre2 PDB 1r0v chain A domain 1 Region: 9 - 22 Aligned: 14 Modelled: 14 Confidence: 12.1% Identity: 14% Fold: Restriction endonuclease-like Superfamily: tRNA-intron endonuclease catalytic domain-like Family: tRNA-intron endonuclease catalytic domain-like Phyre2 PDB 3cnl chain A Region: 67 - 128 Aligned: 62 Modelled: 62 Confidence: 12.0% Identity: 5% PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of gnp-bound ylqf from t. maritima Phyre2 PDB 2kgf chain A Region: 18 - 51 Aligned: 34 Modelled: 34 Confidence: 11.7% Identity: 15% PDB header:viral protein Chain: A: PDB Molecule:capsid protein p27; PDBTitle: n-terminal domain of capsid protein from the mason-pfizer2 monkey virus Phyre2 PDB 1sd4 chain A Region: 73 - 124 Aligned: 50 Modelled: 52 Confidence: 11.4% Identity: 6% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Penicillinase repressor Phyre2 PDB 1t11 chain A domain 2 Region: 122 - 153 Aligned: 32 Modelled: 32 Confidence: 11.3% Identity: 9% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 PDB 1in4 chain A domain 1 Region: 107 - 136 Aligned: 30 Modelled: 30 Confidence: 10.9% Identity: 30% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Helicase DNA-binding domain Phyre2 PDB 1p9y chain A Region: 122 - 153 Aligned: 32 Modelled: 32 Confidence: 10.5% Identity: 16% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 1 c2ld7B_ 2 c2khqA_ 3 d1gxya_ 4 d1puja_ 5 c3lysC_ 6 c3nkzD_ 7 c2oxoA_ 8 c3zv0A_ 9 c2dl1A_ 10 c2rmrA_ 11 c2x2iB_ 12 c4a1eF_ 13 c2v4xA_ 14 d1r0va1 15 c3cnlA_ 16 c2kgfA_ 17 d1sd4a_ 18 d1t11a2 19 d1in4a1 20 d1p9ya_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ld7B_ 61.6 5 PDB header:transcription Chain: B: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of the msin3a pah3-sap30 sid complex 2 c2khqA_ 34.0 13 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b 3 d1gxya_ 31.7 10 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:Ecto-ART 4 d1puja_ 31.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 5 c3lysC_ 30.8 7 PDB header:recombination Chain: C: PDB Molecule:prophage pi2 protein 01, integrase; PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f 6 c3nkzD_ 20.6 15 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:flagellar protein flit; PDBTitle: the crystal structure of a flagella protein from yersinia2 enterocolitica subsp. enterocolitica 8081 7 c2oxoA_ 17.8 8 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase 8 c3zv0A_ 16.8 9 PDB header:cell cycle Chain: A: PDB Molecule:protein shq1; PDBTitle: structure of the shq1p-cbf5p complex 9 c2dl1A_ 16.7 17 PDB header:protein transport Chain: A: PDB Molecule:spartin; PDBTitle: solution structure of the mit domain from human spartin 10 c2rmrA_ 16.5 12 PDB header:transcription Chain: A: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of msin3a pah1 domain 11 c2x2iB_ 14.1 15 PDB header:lyase Chain: B: PDB Molecule:alpha-1,4-glucan lyase isozyme 1; PDBTitle: crystal structure of the gracilariopsis lemaneiformis alpha-2 1,4-glucan lyase with acarbose 12 c4a1eF_ 13.6 25 PDB header:ribosome Chain: F: PDB Molecule:rpl7a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 13 c2v4xA_ 13.6 12 PDB header:viral protein Chain: A: PDB Molecule:capsid protein p27; PDBTitle: crystal structure of jaagsiekte sheep retrovirus capsid n-2 terminal domain 14 d1r0va1 12.1 14 Fold:Restriction endonuclease-like Superfamily:tRNA-intron endonuclease catalytic domain-like Family:tRNA-intron endonuclease catalytic domain-like 15 c3cnlA_ 12.0 5 PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of gnp-bound ylqf from t. maritima 16 c2kgfA_ 11.7 15 PDB header:viral protein Chain: A: PDB Molecule:capsid protein p27; PDBTitle: n-terminal domain of capsid protein from the mason-pfizer2 monkey virus 17 d1sd4a_ 11.4 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 18 d1t11a2 11.3 9 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 19 d1in4a1 10.9 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 20 d1p9ya_ 10.5 16 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 21 c2aaoA_ not modelled 10.2 13 PDB header:transferase Chain: A: PDB Molecule:calcium-dependent protein kinase, isoform ak1; PDBTitle: regulatory apparatus of calcium dependent protein kinase from2 arabidopsis thaliana 22 c2kbrA_ not modelled 10.0 12 PDB header:structural protein/cell adhesion Chain: A: PDB Molecule:harmonin; PDBTitle: solution structure of harmonin n terminal domain in complex2 with a internal peptide of cadherin23 23 c3cprB_ not modelled 9.6 16 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthetase; PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution 24 d2vbua1 not modelled 9.5 36 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like 25 d1t07a_ not modelled 9.4 9 Fold:YggX-like Superfamily:YggX-like Family:YggX-like 26 d1gkza1 not modelled 9.2 13 Fold:Bromodomain-like Superfamily:alpha-ketoacid dehydrogenase kinase, N-terminal domain Family:alpha-ketoacid dehydrogenase kinase, N-terminal domain 27 d1p7da_ not modelled 9.2 5 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 28 d1tlha_ not modelled 9.1 9 Fold:Anti-sigma factor AsiA Superfamily:Anti-sigma factor AsiA Family:Anti-sigma factor AsiA 29 d1nrva_ not modelled 9.1 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 30 c2c0kB_ not modelled 9.1 8 PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin; PDBTitle: the structure of hemoglobin from the botfly gasterophilus2 intestinalis 31 c2dlyA_ not modelled 9.0 14 PDB header:transferase Chain: A: PDB Molecule:fyn-related kinase; PDBTitle: solution structure of the sh2 domain of murine fyn-related2 kinase 32 d1xs8a_ not modelled 9.0 36 Fold:YggX-like Superfamily:YggX-like Family:YggX-like 33 c2ekxA_ not modelled 8.7 21 PDB header:signaling protein Chain: A: PDB Molecule:cytoplasmic tyrosine-protein kinase bmx; PDBTitle: solution structure of the human bmx sh2 domain 34 d1lkka_ not modelled 8.6 7 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 35 d1ixrc1 not modelled 8.6 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 36 c1w2wA_ not modelled 8.4 15 PDB header:isomerase Chain: A: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 37 c3fkkA_ not modelled 8.3 27 PDB header:lyase Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase; PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase 38 c2rhfA_ not modelled 8.0 14 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase recq; PDBTitle: d. radiodurans recq hrdc domain 3 39 c2kouA_ not modelled 8.0 14 PDB header:hydrolase Chain: A: PDB Molecule:dicer-like protein 4; PDBTitle: dicer like protein 40 c3knyA_ not modelled 7.9 11 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein bt_3535; PDBTitle: crystal structure of a two domain protein with unknown function2 (bt_3535) from bacteroides thetaiotaomicron vpi-5482 at 2.60 a3 resolution 41 c3lphD_ not modelled 7.9 17 PDB header:viral protein Chain: D: PDB Molecule:protein rev; PDBTitle: crystal structure of the hiv-1 rev dimer 42 d1g83a2 not modelled 7.6 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 43 c3a7mA_ not modelled 7.6 17 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:flagellar protein flit; PDBTitle: structure of flit, the flagellar type iii chaperone for flid 44 c2x7lP_ not modelled 7.6 16 PDB header:immune system Chain: P: PDB Molecule:hiv rev; PDBTitle: implications of the hiv-1 rev dimer structure at 3.2a2 resolution for multimeric binding to the rev response3 element 45 d1mila_ not modelled 7.6 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 46 d1jwoa_ not modelled 7.6 14 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 47 c3gxxB_ not modelled 7.5 11 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b 48 d1s5qb_ not modelled 7.4 12 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 49 d1pica_ not modelled 7.3 7 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 50 d1em9a_ not modelled 7.3 11 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 51 d2v9va2 not modelled 7.2 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 52 d1w53a_ not modelled 7.2 16 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Phosphoserine phosphatase RsbU, N-terminal domain 53 c2gsbA_ not modelled 7.2 14 PDB header:signaling protein Chain: A: PDB Molecule:ras gtpase-activating protein 1; PDBTitle: solution structure of the second sh2 domain of human ras2 gtpase-activating protein 1 54 c2dcrA_ not modelled 7.1 14 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fes/fps; PDBTitle: fully automated solution structure determination of the fes2 sh2 domain 55 d1f54a_ not modelled 7.1 4 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 56 d1blja_ not modelled 7.0 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 57 c2vhdB_ not modelled 6.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form 58 d1wz3a1 not modelled 6.9 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:APG12-like 59 d1d4ta_ not modelled 6.8 7 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 60 d1d1da2 not modelled 6.8 11 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 61 c2yqsA_ not modelled 6.8 9 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form 62 c2fa5B_ not modelled 6.8 20 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator marr/emrr family; PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris 63 d2qfka1 not modelled 6.7 12 Fold:Globin-like Superfamily:Globin-like Family:Globins 64 d2f05a1 not modelled 6.7 6 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 65 d1ayaa_ not modelled 6.6 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 66 c3pm8B_ not modelled 6.6 18 PDB header:transferase Chain: B: PDB Molecule:calcium-dependent protein kinase 2; PDBTitle: cad domain of pff0520w, calcium dependent protein kinase 67 c3a5dG_ not modelled 6.6 17 PDB header:hydrolase Chain: G: PDB Molecule:v-type atp synthase subunit d; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase 68 c3oxpA_ not modelled 6.6 14 PDB header:transferase Chain: A: PDB Molecule:phosphotransferase enzyme ii, a component; PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution 69 c3oxpB_ not modelled 6.6 14 PDB header:transferase Chain: B: PDB Molecule:phosphotransferase enzyme ii, a component; PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution 70 d1g4yb_ not modelled 6.6 19 Fold:Small-conductance potassium channel Superfamily:Small-conductance potassium channel Family:Small-conductance potassium channel 71 d1t5oa_ not modelled 6.5 7 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 72 c2lctA_ not modelled 6.5 12 PDB header:signaling protein Chain: A: PDB Molecule:proto-oncogene vav; PDBTitle: solution structure of the vav1 sh2 domain complexed with a syk-derived2 doubly phosphorylated peptide 73 d1cnt1_ not modelled 6.5 21 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines 74 c3n4dF_ not modelled 6.4 26 PDB header:hydrolase Chain: F: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of cg10062 inactivated by(r)-oxirane-2-carboxylate 75 c2kj8A_ not modelled 6.4 9 PDB header:dna binding protein Chain: A: PDB Molecule:putative prophage cps-53 integrase; PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2 76 d1rjaa_ not modelled 6.3 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 77 d1opka2 not modelled 6.3 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 78 d1a81e2 not modelled 6.2 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 79 c2ee7A_ not modelled 6.2 19 PDB header:structural protein Chain: A: PDB Molecule:sperm flagellar protein 1; PDBTitle: solution structure of the ch domain from human sperm2 flagellar protein 1 80 d2c9wa2 not modelled 6.2 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 81 d2qmsa1 not modelled 6.1 14 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 82 c3g0sA_ not modelled 6.1 15 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2 83 d2fcia1 not modelled 6.1 17 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 84 c3noeA_ not modelled 6.1 23 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa 85 d1nu9c1 not modelled 6.0 35 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Staphylocoagulase Family:Staphylocoagulase 86 c3kuqA_ not modelled 6.0 17 PDB header:hydrolase activator Chain: A: PDB Molecule:rho gtpase-activating protein 7; PDBTitle: crystal structure of the dlc1 rhogap domain 87 d2oq1a2 not modelled 5.8 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 88 d2shpa3 not modelled 5.8 7 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 89 c2dm0A_ not modelled 5.8 23 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase txk; PDBTitle: solution structure of the sh2 domain of human tyrosine-2 protein kinase txk 90 c3lmdA_ not modelled 5.7 8 PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from corynebacterium glutamicum atcc 13032 91 d1zbdb_ not modelled 5.7 12 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 92 d1xxxa1 not modelled 5.7 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 93 c3eb2A_ not modelled 5.7 12 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution 94 c3pueA_ not modelled 5.7 19 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 95 d1sfka_ not modelled 5.6 22 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 96 c2r8wB_ not modelled 5.6 23 PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 97 c2xzmE_ not modelled 5.6 32 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 98 d2fug11 not modelled 5.5 7 Fold:Bromodomain-like Superfamily:Nqo1C-terminal domain-like Family:Nqo1C-terminal domain-like 99 d1rhzb_ not modelled 5.5 18 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0