PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3knyA_

Fold library id	PDB Header	Molecule	Title
c3knyA_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: hypothetical protein bt_3535;	PDBTitle: crystal structure of hypothetical protein bt_35352 (np_812447.1) from bacteriodes thetaiotaomicron vpi-5482 at3 2.60 a resolution

Links to external resources
Added to library: Sun Aug 29 01:32:09 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N E D W V V N E P X Q S F E E N P E Y A P L N T I P D W V S E K V T P K E Y E L W R T X S S R Y E I N Y S F L K K D I S E K R K K E I Y D C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S G G G S T T S B
T T
G G G G G S S
T T T
G G G S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I N N I C E R I E K G Q I N K Y E G F L N I A D E D G T A E Y K T N G C T L Y T H S L G P Y I K A A V T Y K K S D D D V T I T S S S V Y T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S
S
T T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . .

Sequence S P Y L G N D P S F S G A S S V S Y D K D K K L I A A S C S G T L S F K D G S R K V E V T V Q K T G F X I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
T T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	E	D	W	V	V	N	E	P	X	Q	S	F	E	E	N	P	E	Y	A	P	L	N	T	I	P	D	W	V	S	E	K	V	T	P	K	E	Y	E	L	W	R	T	X	S	S	R	Y	E	I	N	Y	S	F	L	K	K	D	I	S	E	K	R	K	K	E	I	Y	D	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S			S	S	G	G	G	S	T	T	S	B		T	T				G	G	G	G	G	S	S												T	T	T						G	G	G	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	N	N	I	C	E	R	I	E	K	G	Q	I	N	K	Y	E	G	F	L	N	I	A	D	E	D	G	T	A	E	Y	K	T	N	G	C	T	L	Y	T	H	S	L	G	P	Y	I	K	A	A	V	T	Y	K	K	S	D	D	D	V	T	I	T	S	S	S	V	Y	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S	S		S										S																	T	T	S													S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Sequence	S	P	Y	L	G	N	D	P	S	F	S	G	A	S	S	V	S	Y	D	K	D	K	K	L	I	A	A	S	C	S	G	T	L	S	F	K	D	G	S	R	K	V	E	V	T	V	Q	K	T	G	F	X	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	T	T															T	T	T	T															T	T