PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1w2wA_

Fold library id	PDB Header	Molecule	Title
c1w2wA_	PDB header: isomerase	Chain: A: PDB Molecule: 5-methylthioribose-1-phosphate isomerase;	PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits

Links to external resources
Added to library: Tue Mar 16 12:03:04 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X S L E A I V F D R S E P E N V S V K V L D Q L L L P Y T T K Y V P I H T I D D G Y S V I K S X Q V R G A P A I A I V G S L S V L T E V Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S T T S
T T T T T T
S T T S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I K H N P T S D V A T L Y S L V N W E S T K T V L N K R L D F L L S S R P T A V N L S N S L V E I K N I L K S S S D L K A F D G S L Y N Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T G G G G S
T T
T S
S
S T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence C E L I D E D L A N N X K X G D N G A K Y L I D V L Q K D G F K D E F A V L T I C N T G S L A T S G Y G T A L G V I R S L W K D S L A K T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S
S G G G S S S S
S

.

Sequence K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	S	L	E	A	I	V	F	D	R	S	E	P	E	N	V	S	V	K	V	L	D	Q	L	L	L	P	Y	T	T	K	Y	V	P	I	H	T	I	D	D	G	Y	S	V	I	K	S	X	Q	V	R	G	A	P	A	I	A	I	V	G	S	L	S	V	L	T	E	V	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T		S						S	S	T	T	S								T	T	T	T	T	T									S										T	T	S	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	K	H	N	P	T	S	D	V	A	T	L	Y	S	L	V	N	W	E	S	T	K	T	V	L	N	K	R	L	D	F	L	L	S	S	R	P	T	A	V	N	L	S	N	S	L	V	E	I	K	N	I	L	K	S	S	S	D	L	K	A	F	D	G	S	L	Y	N	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S	T	G	G	G	G	S		T	T																		T	S			S		S															T		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	C	E	L	I	D	E	D	L	A	N	N	X	K	X	G	D	N	G	A	K	Y	L	I	D	V	L	Q	K	D	G	F	K	D	E	F	A	V	L	T	I	C	N	T	G	S	L	A	T	S	G	Y	G	T	A	L	G	V	I	R	S	L	W	K	D	S	L	A	K	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T	T			S								S			S	G	G	G	S	S	S	S		S
	.
Sequence	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)