Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	R	V	A	C	V	G	I	T	V	M	D	R	I	Y	Y	V	E	G	L	P	T	E	S	G	K	Y	V	A	R	N	Y	T	E	V	G	G	G	P	A	A	T	A	A	V	A	A	A	R	L	G	A	Q	V	D	F	I	G	R
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	G	D	D	D	T	G	N	S	L	L	A	E	L	E	S	W	G	V	N	T	R	Y	T	K	R	Y	N	Q	A	K	S	S	Q	S	A	I	M	V	D	T	K	G	E	R	I	I	I	N	Y	P	S	P	D	L	L	P	D	A	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		W	L	E	E	I	D	F	S	Q	W	D	V	V	L	A	D	V	R	W	H	D	G	A	K	K	A	F	T	L	A	R	Q	A	G	V	M	T	V	L	D	G	D	I	T	P	Q	D	I	S	E	L	V	A	L	S	D	H	A	A	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	E	P	G	L	A	R	L	T	G	V	K	E	M	A	S	A	L	K	Q	A	Q	T	L	T	N	G	H	V	Y	V	T	Q	G	S	A	G	C	D	W	L	E	N	G	G	R	Q	H	Q	P	A	F	K	V	D	V	V	D	T	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Sequence		G	A	G	D	V	F	H	G	A	L	A	V	A	L	A	T	S	G	D	L	A	E	S	V	R	F	A	S	G	V	A	A	L	K	C	T	R	P	G	G	R	A	G	I	P	D	C	D	Q	T	R	S	F	L	S	L	F	V
Secondary structure
SS confidence
Disorder																																						?	?																			?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2rbc chain A Region: 2 - 298 Aligned: 297 Modelled: 297 Confidence: 100.0% Identity: 35% PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens Phyre2 PDB 1rkd chain A Region: 3 - 296 Aligned: 294 Modelled: 294 Confidence: 100.0% Identity: 28% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 1vm7 chain A Region: 2 - 296 Aligned: 290 Modelled: 295 Confidence: 100.0% Identity: 26% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2c49 chain A Region: 1 - 297 Aligned: 291 Modelled: 297 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family Phyre2 PDB 3pl2 chain D Region: 2 - 294 Aligned: 289 Modelled: 293 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution Phyre2 PDB 3iq0 chain B Region: 1 - 296 Aligned: 292 Modelled: 295 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli Phyre2 PDB 1v19 chain A Region: 1 - 294 Aligned: 284 Modelled: 294 Confidence: 100.0% Identity: 23% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2nwh chain A Region: 1 - 297 Aligned: 293 Modelled: 297 Confidence: 100.0% Identity: 21% PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens Phyre2 PDB 3in1 chain A Region: 2 - 297 Aligned: 296 Modelled: 296 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli Phyre2 PDB 3kzh chain A Region: 2 - 297 Aligned: 295 Modelled: 296 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens Phyre2 PDB 2var chain B Region: 2 - 297 Aligned: 291 Modelled: 296 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate Phyre2 PDB 2fv7 chain A domain 1 Region: 1 - 294 Aligned: 294 Modelled: 294 Confidence: 100.0% Identity: 28% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3i3y chain B Region: 2 - 295 Aligned: 279 Modelled: 280 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae Phyre2 PDB 3go6 chain B Region: 3 - 296 Aligned: 276 Modelled: 279 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp Phyre2 PDB 2pkk chain A Region: 2 - 296 Aligned: 290 Modelled: 295 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine Phyre2 PDB 2dcn chain A domain 1 Region: 2 - 296 Aligned: 289 Modelled: 295 Confidence: 100.0% Identity: 18% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3b1q chain D Region: 4 - 296 Aligned: 285 Modelled: 293 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine Phyre2 PDB 3cqd chain B Region: 1 - 297 Aligned: 293 Modelled: 297 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli Phyre2 PDB 2qcv chain A Region: 2 - 297 Aligned: 287 Modelled: 296 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution Phyre2 PDB 2afb chain A domain 1 Region: 1 - 295 Aligned: 289 Modelled: 294 Confidence: 100.0% Identity: 19% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 1 c2rbcA_ 2 d1rkda_ 3 d1vm7a_ 4 c2c49A_ 5 c3pl2D_ 6 c3iq0B_ 7 d1v19a_ 8 c2nwhA_ 9 c3in1A_ 10 c3kzhA_ 11 c2varB_ 12 d2fv7a1 13 c3i3yB_ 14 c3go6B_ 15 c2pkkA_ 16 d2dcna1 17 c3b1qD_ 18 c3cqdB_ 19 c2qcvA_ 20 d2afba1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2rbcA_ 100.0 35 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 2 d1rkda_ 100.0 28 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 3 d1vm7a_ 100.0 26 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 4 c2c49A_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 5 c3pl2D_ 100.0 26 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 6 c3iq0B_ 100.0 21 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 7 d1v19a_ 100.0 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 8 c2nwhA_ 100.0 21 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 9 c3in1A_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 10 c3kzhA_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 11 c2varB_ 100.0 21 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 12 d2fv7a1 100.0 28 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 13 c3i3yB_ 100.0 24 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 14 c3go6B_ 100.0 28 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 15 c2pkkA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 16 d2dcna1 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 17 c3b1qD_ 100.0 20 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 18 c3cqdB_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 19 c2qcvA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 20 d2afba1 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 21 d2abqa1 not modelled 100.0 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 22 d2f02a1 not modelled 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 23 c3ktnA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 24 d1tyya_ not modelled 100.0 29 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 25 c2jg5B_ not modelled 100.0 14 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 26 c3b3lC_ not modelled 100.0 23 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 27 c2jg1C_ not modelled 100.0 14 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 28 c3gbuD_ not modelled 100.0 22 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 29 c2xtbA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 30 c3kd6B_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 31 c1tz6B_ not modelled 100.0 28 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 32 d1bx4a_ not modelled 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 33 c3lkiA_ not modelled 100.0 22 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 34 c3looC_ not modelled 100.0 19 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 35 c2absA_ not modelled 100.0 21 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 36 d2absa1 not modelled 100.0 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 37 c3bf5A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 38 c3julA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 39 d2ajra1 not modelled 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 40 c3lhxA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 41 c2qhpA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 42 c3hj6B_ not modelled 100.0 24 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 43 d1vk4a_ not modelled 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 44 c2ddmA_ not modelled 99.8 20 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 45 c3mbjA_ not modelled 99.7 15 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 46 c2i5bC_ not modelled 99.7 18 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 47 d1ub0a_ not modelled 99.6 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 48 c3ibqA_ not modelled 99.5 17 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 49 d1vi9a_ not modelled 99.4 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 50 d1lhpa_ not modelled 99.4 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 51 c3rm5B_ not modelled 99.2 17 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 52 d1jxha_ not modelled 99.1 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 53 d1kyha_ not modelled 99.0 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 54 c3dzvB_ not modelled 99.0 16 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 55 d1v8aa_ not modelled 98.7 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 56 d2ax3a1 not modelled 98.6 11 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 57 d1ekqa_ not modelled 98.3 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 58 c2r3bA_ not modelled 98.3 14 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 59 c2ax3A_ not modelled 98.2 11 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 60 c3k5wA_ not modelled 97.9 14 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 61 d1l2la_ not modelled 97.9 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 62 c3bgkA_ not modelled 97.8 14 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 63 d1u2xa_ not modelled 97.7 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 64 c3nm3D_ not modelled 97.6 12 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 65 d1gc5a_ not modelled 97.5 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 66 c3drwA_ not modelled 97.1 18 PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp 67 d1ua4a_ not modelled 97.1 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 68 c1i8tB_ not modelled 73.4 41 PDB header:isomerase Chain: B: PDB Molecule:udp-galactopyranose mutase; PDBTitle: strcuture of udp-galactopyranose mutase from e.coli 69 c3dhnA_ not modelled 72.7 19 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 70 c3g5rA_ not modelled 66.7 43 PDB header:transferase Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)- PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate 71 d1hdoa_ not modelled 62.2 31 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 72 c2f00A_ not modelled 59.4 31 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc 73 c3kd9B_ not modelled 58.2 37 PDB header:oxidoreductase Chain: B: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii 74 c3rfxB_ not modelled 56.2 19 PDB header:oxidoreductase Chain: B: PDB Molecule:uronate dehydrogenase; PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad 75 c3ghyA_ not modelled 55.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:ketopantoate reductase protein; PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2 76 c2a87A_ not modelled 54.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of m. tuberculosis thioredoxin reductase 77 c3etjB_ not modelled 54.0 30 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi 78 d1n1ea2 not modelled 51.5 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 79 c1gqqA_ not modelled 51.1 24 PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae 80 d1gsoa2 not modelled 50.4 23 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 81 c3i4fD_ not modelled 44.9 12 PDB header:oxidoreductase Chain: D: PDB Molecule:3-oxoacyl-[acyl-carrier protein] reductase; PDBTitle: structure of putative 3-oxoacyl-reductase from bacillus thuringiensis 82 d2c5aa1 not modelled 43.0 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 83 c2rf4B_ not modelled 42.3 16 PDB header:transferase Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa4; PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43 84 c2r60A_ not modelled 42.2 34 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 85 c3c1oA_ not modelled 42.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages 86 d1p3da1 not modelled 41.4 22 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 87 c3kpgA_ not modelled 41.3 37 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone 88 c3dojA_ not modelled 39.2 23 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase-like protein; PDBTitle: structure of glyoxylate reductase 1 from arabidopsis2 (atglyr1) 89 d1rdua_ not modelled 38.9 22 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 90 c3ay3C_ not modelled 38.4 22 PDB header:oxidoreductase Chain: C: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of glucuronic acid dehydrogeanse from2 chromohalobacter salexigens 91 c3sc6F_ not modelled 35.2 11 PDB header:oxidoreductase Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase; PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp 92 c3ab1B_ not modelled 34.7 30 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase 93 c3d3jA_ not modelled 33.3 18 PDB header:protein binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 94 c1xdiA_ not modelled 32.6 43 PDB header:unknown function Chain: A: PDB Molecule:rv3303c-lpda; PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis 95 c2q0lA_ not modelled 31.8 40 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+ 96 d1oc2a_ not modelled 28.6 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 97 d2gtad1 not modelled 27.3 22 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 98 c3plnA_ not modelled 27.2 28 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: crystal structure of klebsiella pneumoniae udp-glucose 6-dehydrogenase2 complexed with udp-glucose 99 c1gsoA_ not modelled 27.2 22 PDB header:ligase Chain: A: PDB Molecule:protein (glycinamide ribonucleotide synthetase); PDBTitle: glycinamide ribonucleotide synthetase (gar-syn) from e.2 coli. 100 d2q46a1 not modelled 27.1 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 101 c3crcB_ not modelled 26.9 15 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 102 c3l6eA_ not modelled 25.4 28 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, short-chain dehydrogenase/reductase family; PDBTitle: crystal structure of putative short chain dehydrogenase/reductase2 family oxidoreductase from aeromonas hydrophila subsp. hydrophila3 atcc 7966 103 d2afhe1 not modelled 25.1 37 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 104 d1ztda1 not modelled 24.6 27 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:PF0609-like 105 c2q1wC_ not modelled 24.4 28 PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ 106 d1bxka_ not modelled 24.2 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 107 c3ic9D_ not modelled 23.7 43 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h. 108 c1su1A_ not modelled 23.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yfce; PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli 109 d1su1a_ not modelled 23.3 10 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 110 c1v59B_ not modelled 23.2 40 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+ 111 c2cduB_ not modelled 22.7 21 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph oxidase; PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis 112 c2eq8E_ not modelled 21.5 43 PDB header:oxidoreductase Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 113 c1nhqA_ not modelled 21.0 21 PDB header:oxidoreductase (h2o2(a)) Chain: A: PDB Molecule:nadh peroxidase; PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303 114 d1wu2a3 not modelled 20.6 10 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 115 c3d3kD_ not modelled 20.6 11 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0