Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	R	F	V	P	R	I	I	P	F	Y	L	L	L	L	V	A	G	G	T	A	N	A	Q	S	T	F	E	Q	K	A	A	N	P	F	D	N	N	N	D	G	L	P	D	L	G	M	A	P	E	N	H	D	G	E	K	H	F	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	I	V	K	D	F	G	E	T	S	M	N	D	N	G	L	D	T	G	E	Q	A	K	A	F	A	L	G	K	V	R	D	A	L	S	Q	Q	V	N	Q	H	V	E	S	W	L	S	P	W	G	N	A	S	V	D	V	K	V	D	N
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?	?																																								?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	G	H	F	T	G	S	R	G	S	W	F	V	P	L	Q	D	N	D	R	Y	L	T	W	S	Q	L	G	L	T	Q	Q	D	N	G	L	V	S	N	V	G	V	G	Q	R	W	A	R	G	N	W	L	V	G	Y	N	T	F	Y	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																								?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	L	L	D	E	N	L	Q	R	A	G	F	G	A	E	A	W	G	E	Y	L	R	L	S	A	N	F	Y	Q	P	F	A	A	W	H	E	Q	T	A	T	Q	E	Q	R	M	A	R	G	Y	D	L	T	A	R	M	R	M	P	F	Y
Secondary structure
SS confidence
Disorder									?																											?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	H	L	N	T	S	V	S	L	E	Q	Y	F	G	D	R	V	D	L	F	N	S	G	T	G	Y	H	N	P	V	A	L	S	L	G	L	N	Y	T	P	V	P	L	V	T	V	T	A	Q	H	K	Q	G	E	S	G	E	N	Q	N
Secondary structure
SS confidence
Disorder																				?		?	?	?	?	?	?	?	?	?													?							?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	L	G	L	N	L	N	Y	R	F	G	V	P	L	K	K	Q	L	S	A	G	E	V	A	E	S	Q	S	L	R	G	S	R	Y	D	N	P	Q	R	N	N	L	P	T	L	E	Y	R	Q	R	K	T	L	T	V	F	L	A	T	P
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?	?	?	?	?	?	?	?																								?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		P	W	D	L	K	P	G	E	T	V	P	L	K	L	Q	I	R	S	R	Y	G	I	R	Q	L	I	W	Q	G	D	T	Q	I	L	S	L	T	P	G	A	Q	A	N	S	A	E	G	W	T	L	I	M	P	D	W	Q	N	G	E	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																												?	?	?	?	?	?	?	?	?	?											?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Sequence		A	S	N	H	W	R	L	S	V	V	V	E	D	N	Q	G	Q	R	V	S	S	N	E	I	T	L	T	L	V	E	P	F	D	A	L	S	N	D	E	L	R	W	E	P
Secondary structure
SS confidence
Disorder		?	?												?		?		?	?	?	?								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3pdg chain A Region: 352 - 449 Aligned: 87 Modelled: 98 Confidence: 97.0% Identity: 13% PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 3pe9 chain A Region: 352 - 452 Aligned: 89 Modelled: 101 Confidence: 97.0% Identity: 8% PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 3pe9 chain C Region: 352 - 452 Aligned: 89 Modelled: 101 Confidence: 96.9% Identity: 8% PDB header:unknown function Chain: C: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 3pe9 chain D Region: 352 - 452 Aligned: 85 Modelled: 97 Confidence: 96.5% Identity: 9% PDB header:unknown function Chain: D: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 3pe9 chain B Region: 352 - 452 Aligned: 86 Modelled: 101 Confidence: 96.1% Identity: 8% PDB header:unknown function Chain: B: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 3nb3 chain C Region: 145 - 311 Aligned: 124 Modelled: 130 Confidence: 95.9% Identity: 19% PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Phyre2 PDB 1qj8 chain A Region: 153 - 310 Aligned: 131 Modelled: 136 Confidence: 95.7% Identity: 14% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 3qra chain A Region: 153 - 310 Aligned: 142 Modelled: 148 Confidence: 94.6% Identity: 15% PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis Phyre2 PDB 1pho chain A Region: 160 - 310 Aligned: 144 Modelled: 148 Confidence: 94.2% Identity: 11% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Porin Phyre2 PDB 3pdd chain A Region: 352 - 451 Aligned: 89 Modelled: 100 Confidence: 93.0% Identity: 11% PDB header:unknown function Chain: A: PDB Molecule:glycoside hydrolase, family 9; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 1osm chain A Region: 182 - 310 Aligned: 123 Modelled: 129 Confidence: 92.9% Identity: 14% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Porin Phyre2 PDB 2f1t chain B Region: 151 - 311 Aligned: 137 Modelled: 138 Confidence: 92.6% Identity: 15% PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw Phyre2 PDB 2x4m chain D Region: 152 - 311 Aligned: 150 Modelled: 160 Confidence: 92.5% Identity: 17% PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla Phyre2 PDB 2zfg chain A domain 1 Region: 153 - 310 Aligned: 155 Modelled: 158 Confidence: 91.9% Identity: 12% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Porin Phyre2 PDB 2k0l chain A Region: 169 - 311 Aligned: 143 Modelled: 143 Confidence: 91.6% Identity: 19% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Phyre2 PDB 2jmm chain A Region: 152 - 313 Aligned: 141 Modelled: 146 Confidence: 90.9% Identity: 14% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Phyre2 PDB 1t16 chain A Region: 145 - 315 Aligned: 166 Modelled: 171 Confidence: 90.1% Identity: 14% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Outer membrane protein transport protein Phyre2 PDB 1g90 chain A Region: 152 - 313 Aligned: 148 Modelled: 162 Confidence: 89.8% Identity: 18% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 1qjp chain A Region: 145 - 311 Aligned: 126 Modelled: 132 Confidence: 89.8% Identity: 14% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 2qom chain B Region: 109 - 311 Aligned: 199 Modelled: 202 Confidence: 89.7% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain. Phyre2 PDB 2xwx chain B Region: 329 - 450 Aligned: 118 Modelled: 118 Confidence: 53.3% Identity: 17% PDB header:chitin-binding protein Chain: B: PDB Molecule:glcnac-binding protein a; PDBTitle: vibrio cholerae colonization factor gbpa crystal structure Phyre2 1 c3pdgA_ 2 c3pe9A_ 3 c3pe9C_ 4 c3pe9D_ 5 c3pe9B_ 6 c3nb3C_ 7 d1qj8a_ 8 c3qraA_ 9 d1phoa_ 10 c3pddA_ 11 d1osma_ 12 c2f1tB_ 13 c2x4mD_ 14 d2zfga1 15 c2k0lA_ 16 c2jmmA_ 17 d1t16a_ 18 d1g90a_ 19 d1qjpa_ 20 c2qomB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 c2xwxB_ 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3pdgA_ 97.0 13 PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 2 c3pe9A_ 97.0 8 PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 3 c3pe9C_ 96.9 8 PDB header:unknown function Chain: C: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 4 c3pe9D_ 96.5 9 PDB header:unknown function Chain: D: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 5 c3pe9B_ 96.1 8 PDB header:unknown function Chain: B: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 6 c3nb3C_ 95.9 19 PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components 7 d1qj8a_ 95.7 14 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 8 c3qraA_ 94.6 15 PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis 9 d1phoa_ 94.2 11 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 10 c3pddA_ 93.0 11 PDB header:unknown function Chain: A: PDB Molecule:glycoside hydrolase, family 9; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 11 d1osma_ 92.9 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 12 c2f1tB_ 92.6 15 PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw 13 c2x4mD_ 92.5 17 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 14 d2zfga1 91.9 12 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 15 c2k0lA_ 91.6 19 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. 16 c2jmmA_ 90.9 14 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein 17 d1t16a_ 90.1 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Outer membrane protein transport protein 18 d1g90a_ 89.8 18 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 19 d1qjpa_ 89.8 14 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 20 c2qomB_ 89.7 13 PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain. 21 c3bryB_ not modelled 88.4 9 PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux 22 c3brzA_ not modelled 87.7 11 PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx 23 c3aehB_ not modelled 87.3 10 PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp 24 d1uynx_ not modelled 81.7 11 Fold:Transmembrane beta-barrels Superfamily:Autotransporter Family:Autotransporter 25 c2yrlA_ not modelled 81.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kiaa1837 protein; PDBTitle: solution structure of the pkd domain from kiaa 1837 protein 26 c2x27X_ not modelled 80.7 12 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa 27 d1p4ta_ not modelled 79.2 13 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 28 d1i78a_ not modelled 77.2 12 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane protease OMPT 29 d1wgoa_ not modelled 75.7 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:PKD domain Family:PKD domain 30 d2fcba2 not modelled 72.2 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 31 d1l0qa1 not modelled 71.8 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:PKD domain Family:PKD domain 32 c3dwoX_ not modelled 71.5 14 PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue 33 c2kzwA_ not modelled 68.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of q8psa4 from methanosarcina mazei, northeast2 structural genomics consortium target mar143a 34 d1fnla2 not modelled 67.9 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 35 d1f2qa2 not modelled 65.4 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 36 c3nsgA_ not modelled 61.5 13 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 37 c3qq2C_ not modelled 61.4 12 PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka 38 c2lhfA_ not modelled 59.1 16 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles 39 c2e7mA_ not modelled 58.0 12 PDB header:structural protein Chain: A: PDB Molecule:protein kiaa0319; PDBTitle: solution structure of the pkd domain (329-428) from human2 kiaa0319 40 c3o3uN_ not modelled 57.5 15 PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage) 41 d1epfa1 not modelled 56.2 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 42 c2a74B_ not modelled 55.8 9 PDB header:immune system Chain: B: PDB Molecule:complement component c3c; PDBTitle: human complement component c3c 43 d1pama3 not modelled 55.6 19 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 44 d1w8oa1 not modelled 55.5 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 45 c2xwxB_ 53.3 17 PDB header:chitin-binding protein Chain: B: PDB Molecule:glcnac-binding protein a; PDBTitle: vibrio cholerae colonization factor gbpa crystal structure 46 c2e7bA_ not modelled 51.4 13 PDB header:structural protein Chain: A: PDB Molecule:obscurin; PDBTitle: solution structure of the 6th ig-like domain from human2 kiaa1556 47 c2c26A_ not modelled 50.6 21 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: structural basis for the promiscuous specificity of the2 carbohydrate-binding modules from the beta-sandwich super3 family 48 c2ensA_ not modelled 50.5 22 PDB header:signaling protein Chain: A: PDB Molecule:advanced glycosylation end product-specific PDBTitle: solution structure of the third ig-like domain from human2 advanced glycosylation end product-specific receptor 49 d3bmva3 not modelled 50.5 24 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 50 d1qhoa3 not modelled 49.7 19 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 51 c3ubfA_ not modelled 49.1 19 PDB header:cell adhesion Chain: A: PDB Molecule:neural-cadherin; PDBTitle: crystal structure of drosophila n-cadherin ec1-3, i 52 c3jquA_ not modelled 48.5 14 PDB header:cell adhesion Chain: A: PDB Molecule:collagenase; PDBTitle: crystal structure of clostridium histolyticum colg collagenase2 polycystic kidney disease domain at 1.4 angstrom resolution 53 d1cyga3 not modelled 47.2 19 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 54 d1cxla3 not modelled 46.4 22 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 55 d1biha3 not modelled 46.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 56 d1tiua_ not modelled 45.2 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 57 c2ee0A_ not modelled 45.1 9 PDB header:signaling protein Chain: A: PDB Molecule:protocadherin-9; PDBTitle: solution structures of the ca domain of human protocadherin2 9 58 d2fdbp2 not modelled 44.6 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 59 d1cgta3 not modelled 43.8 15 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 60 c3ottB_ not modelled 43.0 14 PDB header:transcription Chain: B: PDB Molecule:two-component system sensor histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron 61 c2wjqA_ not modelled 41.9 11 PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. 62 d1fcga2 not modelled 41.9 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 63 c2k1mA_ not modelled 41.4 11 PDB header:structural protein Chain: A: PDB Molecule:myosin-binding protein c, cardiac-type; PDBTitle: 3d nmr structure of domain cc0 of cardiac myosin binding2 protein c (mybpc) 64 c2o4vA_ not modelled 40.9 14 PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane 65 c3ff7B_ not modelled 40.6 16 PDB header:cell adhesion/immunue system Chain: B: PDB Molecule:epithelial cadherin; PDBTitle: structure of nk cell receptor klrg1 bound to e-cadherin 66 c1l0qC_ not modelled 40.0 10 PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein 67 c3s37X_ not modelled 39.8 12 PDB header:immune system/transferase Chain: X: PDB Molecule:vascular endothelial growth factor receptor 2; PDBTitle: structural basis for the function of two anti-vegf receptor antibodies 68 c2enyA_ not modelled 39.6 11 PDB header:contractile protein Chain: A: PDB Molecule:obscurin; PDBTitle: solution structure of the ig-like domain (2735-2825) of2 human obscurin 69 c3ppeB_ not modelled 39.6 16 PDB header:cell adhesion Chain: B: PDB Molecule:vascular endothelial cadherin; PDBTitle: crystal structure of chicken ve-cadherin ec1-2 70 c2cr6A_ not modelled 37.9 13 PDB header:contractile protein Chain: A: PDB Molecule:kiaa1556 protein; PDBTitle: solution structure of the ig domain (2998-3100) of human2 obscurin 71 c2gqhA_ not modelled 37.4 12 PDB header:contractile protein Chain: A: PDB Molecule:kiaa1556 protein; PDBTitle: solution structure of the 15th ig-like domain of human2 kiaa1556 protein 72 c2jjsB_ not modelled 37.4 10 PDB header:cell adhesion Chain: B: PDB Molecule:tyrosine-protein phosphatase non-receptor type PDBTitle: structure of human cd47 in complex with human signal2 regulatory protein (sirp) alpha 73 d2fgqx1 not modelled 36.9 15 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 74 d1epfa2 not modelled 36.8 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 75 c2cknA_ not modelled 36.6 13 PDB header:transferase Chain: A: PDB Molecule:basic fibroblast growth factor receptor 1; PDBTitle: nmr structure of the first ig module of mouse fgfr1 76 c2dkuA_ not modelled 36.6 11 PDB header:contractile protein Chain: A: PDB Molecule:kiaa1556 protein; PDBTitle: solution structure of the third ig-like domain of human2 kiaa1556 protein 77 d1gl4b_ not modelled 36.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 78 d2nqda1 not modelled 35.2 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:ICP-like Family:ICP-like 79 c2nmsA_ not modelled 34.3 9 PDB header:immune system Chain: A: PDB Molecule:cmrf35-like-molecule 1; PDBTitle: the crystal structure of the extracellular domain of the2 inhibitor receptor expressed on myeloid cells irem-1 80 d1l3wa5 not modelled 33.5 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cadherin-like Family:Cadherin 81 c2e6pA_ not modelled 32.9 14 PDB header:structural protein Chain: A: PDB Molecule:obscurin-like protein 1; PDBTitle: solution structure of the ig-like domain (714-804) from2 human obscurin-like protein 1 82 d1pd6a_ not modelled 31.9 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 83 d1l3wa4 not modelled 31.9 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cadherin-like Family:Cadherin 84 c3hs0B_ not modelled 31.8 11 PDB header:immune system Chain: B: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b 85 c2bk8A_ not modelled 31.2 14 PDB header:ig domain Chain: A: PDB Molecule:titin heart isoform n2-b; PDBTitle: m1 domain from titin 86 c1ncjA_ not modelled 30.4 13 PDB header:cell adhesion protein Chain: A: PDB Molecule:protein (n-cadherin); PDBTitle: n-cadherin, two-domain fragment 87 c1gzpA_ not modelled 30.1 15 PDB header:glycoprotein Chain: A: PDB Molecule:t-cell surface glycoprotein cd1b; PDBTitle: cd1b in complex with gm2 ganglioside 88 d1o75a1 not modelled 29.4 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Tp47 lipoprotein, middle and C-terminal domains Family:Tp47 lipoprotein, middle and C-terminal domains 89 c1nchB_ not modelled 28.8 16 PDB header:cell adhesion protein Chain: B: PDB Molecule:n-cadherin; PDBTitle: structural basis of cell-cell adhesion by cadherins 90 d1f97a2 not modelled 28.8 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 91 c3m86B_ not modelled 28.6 17 PDB header:protein binding Chain: B: PDB Molecule:amoebiasin-2; PDBTitle: crystal structure of the cysteine protease inhibitor, ehicp2, from2 entamoeba histolytica 92 c1bqsA_ not modelled 27.6 16 PDB header:membrane protein Chain: A: PDB Molecule:protein (mucosal addressin cell adhesion PDBTitle: the crystal structure of mucosal addressin cell adhesion2 molecule-1 (madcam-1) 93 c3ff8B_ not modelled 27.6 14 PDB header:cell adhesion/immune system Chain: B: PDB Molecule:epithelial cadherin; PDBTitle: structure of nk cell receptor klrg1 bound to e-cadherin 94 c1q5cA_ not modelled 26.6 10 PDB header:structural protein Chain: A: PDB Molecule:ep-cadherin; PDBTitle: s-s-lambda-shaped trans and cis interactions of cadherins model based2 on fitting c-cadherin (1l3w) to 3d map of desmosomes obtained by3 electron tomography 95 c2edoA_ not modelled 26.0 14 PDB header:cell adhesion Chain: A: PDB Molecule:cd48 antigen; PDBTitle: solution structure of the first ig-like domain from human2 cd48 antigen 96 c3a2rX_ not modelled 25.9 15 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis 97 d1tlya_ not modelled 25.7 19 Fold:Transmembrane beta-barrels Superfamily:Tsx-like channel Family:Tsx-like channel 98 c2y25C_ not modelled 25.7 14 PDB header:structural protein Chain: C: PDB Molecule:myomesin; PDBTitle: crystal structure of the myomesin domains my11-my13 99 c2oxgE_ not modelled 25.1 19 PDB header:transport protein Chain: E: PDB Molecule:soxz protein; PDBTitle: the soxyz complex of paracoccus pantotrophus 100 c2yuvA_ not modelled 25.0 11 PDB header:cell adhesion Chain: A: PDB Molecule:myosin-binding protein c, slow-type; PDBTitle: solution structure of 2nd immunoglobulin domain of slow2 type myosin-binding protein c 101 d1l3wa1 not modelled 24.9 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cadherin-like Family:Cadherin 102 c2nplX_ not modelled 24.7 13 PDB header:cell adhesion Chain: X: PDB Molecule:coxsackievirus and adenovirus receptor; PDBTitle: nmr structure of card d2 domain 103 d1b4ra_ not modelled 24.5 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:PKD domain Family:PKD domain 104 d1biha1 not modelled 23.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 105 c3g6jB_ not modelled 23.0 9 PDB header:immune system Chain: B: PDB Molecule:complement c3 alpha chain; PDBTitle: c3b in complex with a c3b specific fab 106 c2if7C_ not modelled 22.8 21 PDB header:immune system Chain: C: PDB Molecule:slam family member 6; PDBTitle: crystal structure of ntb-a 107 d1u2ca1 not modelled 22.6 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cadherin-like Family:Dystroglycan, N-terminal domain 108 c1zvnA_ not modelled 22.2 13 PDB header:---- Chain: A: PDB Molecule:mn-cadherin; PDBTitle: crystal structure of chick mn-cadherin ec1 109 c2yuzA_ not modelled 21.7 7 PDB header:immune system Chain: A: PDB Molecule:myosin-binding protein c, slow-type; PDBTitle: solution structure of 4th immunoglobulin domain of slow2 type myosin-binding protein c 110 c1hngB_ not modelled 21.5 15 PDB header:t lymphocyte adhesion glycoprotein Chain: B: PDB Molecule:cd2; PDBTitle: crystal structure at 2.8 angstroms resolution of a soluble2 form of the cell adhesion molecule cd2 111 c2a73B_ not modelled 21.3 10 PDB header:immune system Chain: B: PDB Molecule:complement c3; PDBTitle: human complement component c3 112 c3lndC_ not modelled 21.2 19 PDB header:cell adhesion Chain: C: PDB Molecule:cdh6 protein; PDBTitle: crystal structure of cadherin-6 ec12 w4a 113 c3mpcB_ not modelled 20.9 19 PDB header:unknown function Chain: B: PDB Molecule:fn3-like protein; PDBTitle: the crystal structure of a fn3-like protein from clostridium2 thermocellum 114 c1nciA_ not modelled 20.8 16 PDB header:cell adhesion protein Chain: A: PDB Molecule:n-cadherin; PDBTitle: structural basis of cell-cell adhesion by cadherins 115 d1ncia_ not modelled 20.8 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cadherin-like Family:Cadherin 116 c2wd0C_ not modelled 20.2 9 PDB header:cell adhesion Chain: C: PDB Molecule:cadherin-23; PDBTitle: crystal structure of nonsyndromic deafness (dfnb12)2 associated mutant d124g of mouse cadherin-23 ec1-2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0